PMC:7755033 / 102203-102992 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7755033","sourcedb":"PMC","sourceid":"7755033","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7755033","text":"Figure 12.2. PCA of SARS-CoV-2 main protease (PDB ID: 6LU7) with withanolide A (A) PCA results for trajectory (B) Simple clustering in PC subspace(C) Table data showing residue-wise loadings for PC1, PC2 and PC3 and residue number at each position (D) Clustering dendogram based on PC1, PC2 and PC3 (E) Dynamical residue cross-correlation map; the correlated residues are in blue, anti-correlated residues are in red; the pairwise residues with higher correlated coefficient (\u003e0.8) and with higher anti-correlated coefficient (≤0.4) are linked with light pink and light blue (Int_mod) (F) Residue-wise loadings for PC1, PC2 and PC3 (G) Table showing pairwise cross-correlation coefficients; higher correlated coefficient value is \u003e0.8 and higher anti-correlated coefficient value is ≤0.4.","divisions":[{"label":"label","span":{"begin":0,"end":12}}],"tracks":[{"project":"LitCovid-PubTator","denotations":[{"id":"1967","span":{"begin":196,"end":199},"obj":"Gene"},{"id":"1968","span":{"begin":201,"end":204},"obj":"Gene"},{"id":"1969","span":{"begin":209,"end":212},"obj":"Gene"},{"id":"1970","span":{"begin":288,"end":291},"obj":"Gene"},{"id":"1971","span":{"begin":296,"end":299},"obj":"Gene"},{"id":"1972","span":{"begin":616,"end":619},"obj":"Gene"},{"id":"1973","span":{"begin":621,"end":624},"obj":"Gene"},{"id":"1974","span":{"begin":629,"end":632},"obj":"Gene"},{"id":"1975","span":{"begin":283,"end":286},"obj":"Gene"},{"id":"1976","span":{"begin":47,"end":50},"obj":"Gene"},{"id":"1977","span":{"begin":21,"end":31},"obj":"Species"}],"attributes":[{"id":"A1967","pred":"tao:has_database_id","subj":"1967","obj":"Gene:7163"},{"id":"A1968","pred":"tao:has_database_id","subj":"1968","obj":"Gene:3854"},{"id":"A1969","pred":"tao:has_database_id","subj":"1969","obj":"Gene:3853"},{"id":"A1970","pred":"tao:has_database_id","subj":"1970","obj":"Gene:3854"},{"id":"A1971","pred":"tao:has_database_id","subj":"1971","obj":"Gene:3853"},{"id":"A1972","pred":"tao:has_database_id","subj":"1972","obj":"Gene:7163"},{"id":"A1973","pred":"tao:has_database_id","subj":"1973","obj":"Gene:3854"},{"id":"A1974","pred":"tao:has_database_id","subj":"1974","obj":"Gene:3853"},{"id":"A1975","pred":"tao:has_database_id","subj":"1975","obj":"Gene:7163"},{"id":"A1976","pred":"tao:has_database_id","subj":"1976","obj":"Gene:5131"},{"id":"A1977","pred":"tao:has_database_id","subj":"1977","obj":"Tax:2697049"},{"subj":"1967","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1968","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1969","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1970","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1971","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1972","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1973","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1974","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1975","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1976","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1977","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T1059","span":{"begin":0,"end":12},"obj":"Sentence"},{"id":"T1060","span":{"begin":14,"end":54},"obj":"Sentence"},{"id":"T1061","span":{"begin":55,"end":789},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T1059","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1060","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1061","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PubTator","color":"#93d3ec","default":true},{"id":"LitCovid-sentences","color":"#eceb93"}]}]}}