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PMC:7736111 / 73960-118775 JSONTXT

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LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T18 3594-3609 Phenotype denotes Lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T19 4605-4620 Phenotype denotes lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T20 16285-16305 Phenotype denotes autoimmune condition http://purl.obolibrary.org/obo/HP_0002960
T21 24136-24153 Phenotype denotes acute lung injury http://www.orpha.net/ORDO/Orphanet_178320
T22 32281-32290 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T23 33957-33972 Phenotype denotes Lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T24 34050-34065 Phenotype denotes lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T25 34424-34439 Phenotype denotes lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T26 34580-34595 Phenotype denotes lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T27 35522-35537 Phenotype denotes lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T28 36011-36026 Phenotype denotes lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T29 36782-36797 Phenotype denotes lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T30 39130-39145 Phenotype denotes lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T31 39873-39890 Phenotype denotes chronic infection http://purl.obolibrary.org/obo/HP_0031035
T32 40108-40124 Phenotype denotes immunodeficiency http://purl.obolibrary.org/obo/HP_0002721
T33 41057-41072 Phenotype denotes lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T34 42290-42305 Phenotype denotes lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T35 42780-42795 Phenotype denotes lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T36 42861-42876 Phenotype denotes lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T37 43316-43331 Phenotype denotes lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T38 43698-43713 Phenotype denotes lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T39 44365-44379 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041
T40 44646-44662 Phenotype denotes highly sensitive http://purl.obolibrary.org/obo/HP_0041092

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1828 60-68 Species denotes patients Tax:9606
1829 177-185 Species denotes patients Tax:9606
1830 366-374 Species denotes patients Tax:9606
1831 571-579 Species denotes patients Tax:9606
1832 51-59 Disease denotes COVID-19 MESH:C000657245
1833 562-570 Disease denotes COVID-19 MESH:C000657245
1834 640-658 Disease denotes hyper-inflammation MESH:D007249
1835 939-947 Disease denotes COVID-19 MESH:C000657245
1837 1003-1011 Disease denotes COVID-19 MESH:C000657245
1845 1472-1475 Gene denotes TH1 Gene:51497
1846 1500-1505 Gene denotes IFN-γ Gene:3458
1847 1507-1511 Gene denotes IL-2 Gene:3558
1848 1542-1547 Gene denotes IL-17 Gene:3605
1849 1410-1418 Species denotes patients Tax:9606
1850 1611-1619 Species denotes patients Tax:9606
1851 1192-1200 Disease denotes COVID-19 MESH:C000657245
1879 1921-1926 Gene denotes IFN-γ Gene:3458
1880 1928-1934 Gene denotes GM-CSF Gene:1437
1881 1940-1944 Gene denotes IL-6 Gene:3569
1882 2161-2164 Gene denotes TH1 Gene:51497
1883 2316-2319 Gene denotes CD8 Gene:925
1884 2471-2477 Gene denotes GM-CSF Gene:1437
1885 2491-2494 Gene denotes CD8 Gene:925
1886 2572-2576 Gene denotes IL-6 Gene:3569
1887 2581-2586 Gene denotes TNF-α Gene:7124
1888 2692-2696 Gene denotes CCL2 Gene:6347
1889 2698-2704 Gene denotes CXCL10 Gene:3627
1890 2706-2713 Gene denotes Eotaxin Gene:6356
1891 2719-2725 Gene denotes IL-1RA Gene:3557
1892 2746-2749 Gene denotes CD8 Gene:925
1893 2795-2800 Gene denotes IFN-γ Gene:3458
1894 2960-2963 Gene denotes CD8 Gene:925
1895 2943-2946 Gene denotes TH1 Gene:51497
1896 1875-1878 Gene denotes TH1 Gene:51497
1897 2127-2135 Species denotes patients Tax:9606
1898 2369-2377 Species denotes patients Tax:9606
1899 2513-2521 Species denotes patients Tax:9606
1900 2623-2631 Species denotes patients Tax:9606
1901 2985-2993 Species denotes patients Tax:9606
1902 2118-2126 Disease denotes COVID-19 MESH:C000657245
1903 2360-2368 Disease denotes COVID-19 MESH:C000657245
1904 2614-2622 Disease denotes COVID-19 MESH:C000657245
1905 2976-2984 Disease denotes COVID-19 MESH:C000657245
1919 3173-3178 Gene denotes IFN-γ Gene:3458
1920 3180-3184 Gene denotes IL-2 Gene:3558
1921 3190-3195 Gene denotes TNF-α Gene:7124
1922 3199-3202 Gene denotes CD4 Gene:920
1923 3264-3268 Gene denotes IL-2 Gene:3558
1924 3270-3273 Gene denotes CD8 Gene:925
1925 3279-3284 Gene denotes IFN-γ Gene:3458
1926 3286-3289 Gene denotes CD8 Gene:925
1927 3437-3440 Gene denotes CD4 Gene:920
1928 3446-3449 Gene denotes CD8 Gene:925
1929 3092-3100 Disease denotes COVID-19 MESH:C000657245
1930 3594-3609 Disease denotes Lymphocytopenia MESH:D008231
1931 3617-3625 Disease denotes COVID-19 MESH:C000657245
1939 3686-3690 Gene denotes IL-4 Gene:3565
1940 3695-3699 Gene denotes IL-5 Gene:3567
1941 3718-3723 Gene denotes IL-17 Gene:3605
1942 4246-4254 Species denotes patients Tax:9606
1943 3961-3972 Species denotes respiratory Tax:12814
1944 3652-3655 Gene denotes TH1 Gene:51497
1945 4146-4154 Disease denotes COVID-19 MESH:C000657245
1948 4416-4424 Disease denotes COVID-19 MESH:C000657245
1949 4425-4434 Disease denotes Infection MESH:D007239
1955 4702-4710 Species denotes patients Tax:9606
1956 4605-4620 Disease denotes lymphocytopenia MESH:D008231
1957 4693-4701 Disease denotes COVID-19 MESH:C000657245
1958 4949-4957 Disease denotes COVID-19 MESH:C000657245
1959 5156-5166 Disease denotes infections MESH:D007239
1970 5256-5259 Gene denotes CD4 Gene:920
1971 5265-5268 Gene denotes CD8 Gene:925
1972 5682-5685 Gene denotes CD4 Gene:920
1973 5691-5694 Gene denotes CD8 Gene:925
1974 5872-5875 Gene denotes CD8 Gene:925
1975 5918-5928 Gene denotes granzyme B Gene:3002
1976 5203-5210 Species denotes patient Tax:9606
1977 5395-5402 Species denotes patient Tax:9606
1978 5510-5518 Species denotes patients Tax:9606
1979 5501-5509 Disease denotes COVID-19 MESH:C000657245
1982 5997-6000 Gene denotes CD4 Gene:920
1983 6006-6009 Gene denotes CD8 Gene:925
2001 6703-6706 Gene denotes CD4 Gene:920
2002 6714-6717 Gene denotes CD8 Gene:925
2003 6766-6771 Gene denotes IFN-γ Gene:3458
2004 6773-6778 Gene denotes TNF-α Gene:7124
2005 6780-6785 Gene denotes IL-17 Gene:3605
2006 6791-6795 Gene denotes IL-2 Gene:3558
2007 7069-7072 Gene denotes CD8 Gene:925
2008 7084-7087 Gene denotes CD4 Gene:920
2009 7168-7171 Gene denotes CD8 Gene:925
2010 7310-7313 Gene denotes CD8 Gene:925
2011 7377-7387 Gene denotes granzyme B Gene:3002
2012 6613-6616 Gene denotes CD8 Gene:925
2013 6604-6607 Gene denotes CD4 Gene:920
2014 6549-6557 Species denotes patients Tax:9606
2015 6961-6969 Species denotes patients Tax:9606
2016 7134-7142 Species denotes patients Tax:9606
2017 6540-6548 Disease denotes COVID-19 MESH:C000657245
2021 7784-7787 Gene denotes CD4 Gene:920
2022 7793-7796 Gene denotes CD8 Gene:925
2023 7728-7736 Species denotes patients Tax:9606
2034 8337-8340 Gene denotes CD8 Gene:925
2035 8396-8401 Gene denotes NKG2A Gene:3821
2036 8436-8441 Gene denotes IFN-γ Gene:3458
2037 8443-8447 Gene denotes IL-2 Gene:3558
2038 8453-8463 Gene denotes granzyme B Gene:3002
2039 8833-8836 Gene denotes CD8 Gene:925
2040 8859-8862 Gene denotes CD4 Gene:404704
2041 8309-8317 Species denotes patients Tax:9606
2042 9010-9018 Species denotes patients Tax:9606
2043 8300-8308 Disease denotes COVID-19 MESH:C000657245
2062 9253-9256 Gene denotes CD4 Gene:920
2063 9346-9351 Gene denotes IFN-γ Gene:3458
2064 9356-9360 Gene denotes IL-2 Gene:3558
2065 9372-9375 Gene denotes CD4 Gene:920
2066 9392-9396 Gene denotes IL-2 Gene:3558
2067 9408-9411 Gene denotes CD4 Gene:920
2068 9495-9498 Gene denotes CD8 Gene:925
2069 9559-9565 Gene denotes CTLA-4 Gene:1493
2070 9693-9696 Gene denotes CD4 Gene:920
2071 9702-9705 Gene denotes CD8 Gene:925
2072 9841-9846 Gene denotes Tim-3 Gene:84868
2073 9888-9891 Gene denotes CD8 Gene:925
2074 9898-9901 Gene denotes CD4 Gene:920
2075 9736-9744 Species denotes patients Tax:9606
2076 10245-10253 Species denotes patients Tax:9606
2077 10010-10013 Gene denotes CD4 Gene:920
2078 10019-10022 Gene denotes CD8 Gene:925
2079 9596-9600 Disease denotes TGIT
2095 10572-10575 Gene denotes CD4 Gene:920
2096 10581-10584 Gene denotes CD8 Gene:925
2097 10807-10810 Gene denotes CD8 Gene:925
2098 10896-10899 Gene denotes CD8 Gene:925
2099 11046-11049 Gene denotes CD4 Gene:920
2100 11055-11058 Gene denotes CD8 Gene:925
2101 11150-11153 Gene denotes CD8 Gene:925
2102 11183-11187 Gene denotes GZMA Gene:3001
2103 11192-11196 Gene denotes GZMK Gene:3003
2104 10395-10403 Species denotes patients Tax:9606
2105 11013-11021 Species denotes patients Tax:9606
2106 10386-10394 Disease denotes COVID-19 MESH:C000657245
2107 10463-10472 Disease denotes infection MESH:D007239
2108 11004-11012 Disease denotes COVID-19 MESH:C000657245
2109 11387-11396 Disease denotes infection MESH:D007239
2130 11514-11517 Gene denotes CD4 Gene:920
2131 11523-11526 Gene denotes CD8 Gene:925
2132 11732-11735 Gene denotes CD4 Gene:920
2133 11790-11795 Gene denotes IFN-γ Gene:3458
2134 11797-11801 Gene denotes IL-2 Gene:3558
2135 11810-11814 Gene denotes IL-6 Gene:3569
2136 11820-11826 Gene denotes GM-CSF Gene:1437
2137 11846-11849 Gene denotes CD8 Gene:925
2138 11929-11934 Gene denotes IFN-γ Gene:3458
2139 12022-12042 Gene denotes granzyme A, B, and K Gene:3001
2140 12051-12056 Gene denotes GZM-A Gene:3001
2141 12248-12252 Gene denotes Tim3 Gene:84868
2142 12258-12263 Gene denotes NKG2A Gene:3821
2143 12776-12780 Gene denotes IL4R Gene:3566
2144 12782-12790 Gene denotes TNFSF13B Gene:10673
2145 12796-12800 Gene denotes XBP1 Gene:7494
2146 11975-11978 Gene denotes CD8 Gene:925
2147 11463-11483 Disease denotes SARS-CoV-2 infection MESH:C000657245
2148 11642-11651 Disease denotes infection MESH:D007239
2149 11943-11963 Disease denotes SARS-CoV-2 infection MESH:C000657245
2163 13016-13019 Gene denotes CD4 Gene:920
2164 13055-13058 Gene denotes CD8 Gene:925
2165 13205-13208 Gene denotes CD8 Gene:925
2166 13458-13461 Gene denotes CD8 Gene:925
2167 13860-13863 Gene denotes CD4 Gene:920
2168 14040-14043 Gene denotes CD8 Gene:925
2169 13548-13551 Gene denotes CD8 Gene:925
2170 13241-13249 Species denotes patients Tax:9606
2171 13438-13448 Species denotes SARS-CoV-2 Tax:2697049
2172 13610-13618 Species denotes patients Tax:9606
2173 13417-13426 Species denotes Influenza Tax:11320
2174 13601-13609 Disease denotes COVID-19 MESH:C000657245
2175 14076-14085 Disease denotes infection MESH:D007239
2184 14199-14202 Gene denotes CD4 Gene:920
2185 14208-14211 Gene denotes CD8 Gene:925
2186 14296-14299 Gene denotes CD4 Gene:920
2187 14336-14339 Gene denotes CD4 Gene:920
2188 14347-14352 Gene denotes CD127 Gene:3575
2189 14432-14435 Gene denotes CD8 Gene:925
2190 14463-14466 Gene denotes CD8 Gene:925
2191 14712-14720 Species denotes patients Tax:9606
2193 14755-14763 Disease denotes COVID-19 MESH:C000657245
2197 14863-14867 Species denotes CoVs Tax:11118
2198 15061-15069 Species denotes patients Tax:9606
2199 15052-15060 Disease denotes COVID-19 MESH:C000657245
2209 17036-17041 Gene denotes CD138 Gene:6382
2210 15682-15690 Species denotes patients Tax:9606
2211 16388-16396 Species denotes patients Tax:9606
2212 16798-16806 Species denotes patients Tax:9606
2213 16484-16494 Species denotes SARS-CoV-2 Tax:2697049
2214 16881-16891 Species denotes SARS-CoV-2 Tax:2697049
2215 15354-15362 Disease denotes COVID-19 MESH:C000657245
2216 16373-16387 Disease denotes critically ill MESH:D016638
2217 16618-16632 Disease denotes critically ill MESH:D016638
2236 17655-17660 Gene denotes Bcl-6 Gene:604
2237 17662-17684 Gene denotes germinal center (GC) B Gene:2629
2238 17958-17963 Gene denotes TNF-α Gene:7124
2239 18030-18035 Gene denotes TNF-α Gene:7124
2240 17887-17890 Gene denotes TH1 Gene:51497
2241 17715-17723 Species denotes patients Tax:9606
2242 18361-18369 Species denotes patients Tax:9606
2243 18441-18449 Species denotes patients Tax:9606
2244 18653-18661 Species denotes patients Tax:9606
2245 18685-18693 Species denotes patients Tax:9606
2246 18868-18876 Species denotes patients Tax:9606
2247 19158-19166 Species denotes patients Tax:9606
2248 17506-17514 Disease denotes COVID-19 MESH:C000657245
2249 17745-17753 Disease denotes COVID-19 MESH:C000657245
2250 18146-18154 Disease denotes COVID-19 MESH:C000657245
2251 18352-18360 Disease denotes COVID-19 MESH:C000657245
2252 18788-18796 Disease denotes Covid-19 MESH:C000657245
2253 19149-19157 Disease denotes COVID-19 MESH:C000657245
2255 19278-19286 Disease denotes COVID-19 MESH:C000657245
2263 20105-20113 Species denotes patients Tax:9606
2264 20463-20471 Species denotes patients Tax:9606
2265 20766-20774 Species denotes patients Tax:9606
2266 19362-19370 Disease denotes COVID-19 MESH:C000657245
2267 19507-19515 Disease denotes COVID-19 MESH:C000657245
2268 19564-19580 Disease denotes viral infections MESH:D001102
2269 19628-19647 Disease denotes SARS-CoV infections MESH:C000657245
2274 21120-21124 Gene denotes IL-6 Gene:3569
2275 21126-21132 Gene denotes CXCL10 Gene:3627
2276 21166-21169 Gene denotes C5a Gene:728
2277 21391-21401 Species denotes SARS-CoV-2 Tax:2697049
2286 21719-21727 Species denotes patients Tax:9606
2287 21777-21785 Species denotes patients Tax:9606
2288 21954-21962 Species denotes patients Tax:9606
2289 22371-22379 Species denotes patients Tax:9606
2290 22418-22425 Species denotes persons Tax:9606
2291 22726-22734 Species denotes patients Tax:9606
2292 23026-23034 Species denotes patients Tax:9606
2293 21710-21718 Disease denotes COVID-19 MESH:C000657245
2307 23279-23287 Species denotes patients Tax:9606
2308 23348-23356 Species denotes patients Tax:9606
2309 23411-23419 Species denotes patients Tax:9606
2310 23531-23539 Species denotes patients Tax:9606
2311 23585-23593 Species denotes patients Tax:9606
2312 23770-23784 Species denotes rhesus monkeys Tax:9544
2313 23818-23826 Species denotes SARS-CoV Tax:694009
2314 23175-23193 Disease denotes SARS-CoV infection MESH:C000657245
2315 23261-23278 Disease denotes SARS-CoV infected MESH:C000657245
2316 23800-23808 Disease denotes infected MESH:D007239
2317 23900-23909 Disease denotes infection MESH:D007239
2318 24136-24153 Disease denotes acute lung injury MESH:D055371
2319 24277-24288 Disease denotes lung injury MESH:D055370
2333 25894-25895 Gene denotes N Gene:43740575
2334 25741-25742 Gene denotes N Gene:43740575
2335 24915-24920 Species denotes woman Tax:9606
2336 25074-25082 Species denotes patients Tax:9606
2337 25212-25220 Species denotes patients Tax:9606
2338 25427-25435 Species denotes patients Tax:9606
2339 25634-25642 Species denotes patients Tax:9606
2340 26069-26077 Species denotes patients Tax:9606
2341 26279-26292 Species denotes coronaviruses Tax:11118
2342 25710-25720 Species denotes SARS-CoV-2 Tax:2697049
2343 25418-25426 Disease denotes COVID-19 MESH:C000657245
2344 26060-26068 Disease denotes COVID-19 MESH:C000657245
2345 26446-26454 Disease denotes COVID-19 MESH:C000657245
2354 26666-26671 Gene denotes TNF-α Gene:7124
2355 26627-26635 Species denotes patients Tax:9606
2356 26780-26788 Species denotes patients Tax:9606
2357 26967-26975 Species denotes patients Tax:9606
2358 26982-26989 Species denotes patient Tax:9606
2359 27326-27333 Species denotes patient Tax:9606
2360 27538-27546 Species denotes patients Tax:9606
2361 26952-26966 Disease denotes critically ill MESH:D016638
2363 27571-27581 Species denotes SARS-CoV-2 Tax:2697049
2377 28073-28074 Gene denotes N Gene:43740575
2378 27836-27844 Species denotes SARS-CoV Tax:694009
2379 27902-27912 Species denotes SARS-CoV-2 Tax:2697049
2380 27984-27992 Species denotes patients Tax:9606
2381 28029-28037 Species denotes SARS-CoV Tax:694009
2382 28067-28072 Species denotes CoV-2 Tax:2697049
2383 28098-28106 Species denotes patients Tax:9606
2384 28179-28189 Species denotes SARS-CoV-2 Tax:2697049
2385 28315-28328 Species denotes coronaviruses Tax:11118
2386 27647-27655 Species denotes SARS-CoV Tax:694009
2387 27709-27719 Species denotes SARS-CoV-2 Tax:2697049
2388 27853-27859 Chemical denotes CR3022
2389 27864-27868 Chemical denotes S309
2399 28629-28639 Species denotes SARS-CoV-2 Tax:2697049
2400 28646-28654 Species denotes SARS-CoV Tax:694009
2401 28655-28663 Species denotes patients Tax:9606
2402 28862-28872 Species denotes SARS-CoV-2 Tax:2697049
2403 28877-28885 Species denotes SARS-CoV Tax:694009
2404 28953-28963 Species denotes SARS-CoV-2 Tax:2697049
2405 29145-29155 Species denotes SARS-CoV-2 Tax:2697049
2406 29188-29192 Species denotes CoVs Tax:11118
2407 28999-29005 Chemical denotes CR3022
2413 29683-29691 Species denotes patients Tax:9606
2414 29918-29928 Species denotes SARS-CoV-2 Tax:2697049
2415 30178-30188 Species denotes SARS-CoV-2 Tax:2697049
2416 29818-29825 Chemical denotes BD-368-
2417 29674-29682 Disease denotes COVID-19 MESH:C000657245
2419 30382-30390 Disease denotes COVID-19 MESH:C000657245
2428 30651-30672 Gene denotes Fc gamma receptor IIa Gene:2212
2429 30674-30681 Gene denotes FcγRIIa Gene:2212
2430 31057-31065 Species denotes patients Tax:9606
2431 31216-31224 Species denotes SARS-CoV Tax:694009
2432 31342-31350 Species denotes SARS-CoV Tax:694009
2433 31354-31364 Species denotes SARS-CoV-2 Tax:2697049
2434 31467-31471 Species denotes CoVs Tax:11118
2435 31478-31486 Species denotes patients Tax:9606
2437 31626-31634 Disease denotes COVID-19 MESH:C000657245
2445 31690-31698 Species denotes patients Tax:9606
2446 32416-32422 Species denotes meagre Tax:172269
2447 31681-31689 Disease denotes COVID-19 MESH:C000657245
2448 31760-31769 Disease denotes infection MESH:D007239
2449 32029-32037 Disease denotes COVID-19 MESH:C000657245
2450 32141-32150 Disease denotes infection MESH:D007239
2451 32268-32290 Disease denotes eosinophilic pneumonia MESH:D011657
2462 33430-33435 Gene denotes IL-18 Gene:3606
2463 32647-32655 Species denotes patients Tax:9606
2464 32877-32885 Species denotes patients Tax:9606
2465 33036-33044 Species denotes patients Tax:9606
2466 33291-33299 Species denotes patients Tax:9606
2467 32638-32646 Disease denotes COVID-19 MESH:C000657245
2468 33027-33035 Disease denotes COVID-19 MESH:C000657245
2469 33276-33290 Disease denotes critically ill MESH:D016638
2470 33551-33560 Disease denotes infection MESH:D007239
2471 33917-33925 Disease denotes COVID-19 MESH:C000657245
2474 33957-33972 Disease denotes Lymphocytopenia MESH:D008231
2475 33980-33988 Disease denotes COVID-19 MESH:C000657245
2487 34105-34113 Species denotes patients Tax:9606
2488 34603-34613 Species denotes SARS-CoV-2 Tax:2697049
2489 34050-34065 Disease denotes lymphocytopenia MESH:D008231
2490 34081-34095 Disease denotes critically ill MESH:D016638
2491 34096-34104 Disease denotes COVID-19 MESH:C000657245
2492 34424-34439 Disease denotes lymphocytopenia MESH:D008231
2493 34480-34488 Disease denotes COVID-19 MESH:C000657245
2494 34580-34595 Disease denotes lymphocytopenia MESH:D008231
2495 34731-34747 Disease denotes viral infections MESH:D001102
2496 34972-34981 Disease denotes infection MESH:D007239
2497 35018-35026 Disease denotes necrosis MESH:D009336
2509 35306-35309 Gene denotes CD8 Gene:925
2510 35715-35720 Gene denotes CD11a Gene:3683
2511 35778-35781 Gene denotes CD4 Gene:920
2512 35787-35790 Gene denotes CD8 Gene:925
2513 35106-35114 Species denotes patients Tax:9606
2514 35368-35376 Species denotes patients Tax:9606
2515 35675-35683 Species denotes patients Tax:9606
2516 35097-35105 Disease denotes COVID-19 MESH:C000657245
2517 35522-35537 Disease denotes lymphocytopenia MESH:D008231
2518 35666-35674 Disease denotes COVID-19 MESH:C000657245
2519 35930-35938 Disease denotes infected MESH:D007239
2528 36373-36376 Gene denotes CD4 Gene:920
2529 36382-36385 Gene denotes CD8 Gene:925
2530 36503-36506 Gene denotes CD8 Gene:925
2531 36337-36344 Species denotes patient Tax:9606
2532 36011-36026 Disease denotes lymphocytopenia MESH:D008231
2533 36220-36229 Disease denotes infection MESH:D007239
2534 36742-36751 Disease denotes infection MESH:D007239
2535 36782-36797 Disease denotes lymphocytopenia MESH:D008231
2561 37632-37635 Gene denotes CD4 Gene:920
2562 37722-37726 Gene denotes IL-2 Gene:3558
2563 37728-37733 Gene denotes IL-10 Gene:3586
2564 37735-37740 Gene denotes IL-21 Gene:59067
2565 37742-37747 Gene denotes IFN-γ Gene:3458
2566 37752-37757 Gene denotes TNF-α Gene:7124
2567 37829-37835 Gene denotes CTLA-4 Gene:1493
2568 37837-37842 Gene denotes LAG-3 Gene:3902
2569 37844-37849 Gene denotes CD244 Gene:51744
2570 37861-37866 Gene denotes TIM-3 Gene:84868
2571 37919-37922 Gene denotes CD8 Gene:925
2572 37981-37985 Gene denotes IL-2 Gene:3558
2573 37987-37992 Gene denotes IFN-γ Gene:3458
2574 37994-37999 Gene denotes TNF-α Gene:7124
2575 38087-38092 Gene denotes CD122 Gene:3560
2576 38160-38166 Gene denotes CTLA-4 Gene:1493
2577 38168-38173 Gene denotes NKG2A Gene:3821
2578 38175-38180 Gene denotes TIGIT Gene:201633
2579 38182-38187 Gene denotes LAG-3 Gene:3902
2580 38189-38194 Gene denotes CD244 Gene:51744
2581 38206-38211 Gene denotes CD160 Gene:11126
2582 38414-38420 Gene denotes LAIR-1 Gene:3903
2583 38097-38102 Gene denotes CD127 Gene:3575
2584 36977-36985 Species denotes patients Tax:9606
2585 36968-36976 Disease denotes COVID-19 MESH:C000657245
2604 38571-38574 Gene denotes CD8 Gene:925
2605 38582-38585 Gene denotes CD4 Gene:920
2606 38903-38907 Gene denotes BATF Gene:10538
2607 38909-38913 Gene denotes IRF4 Gene:3662
2608 38919-38924 Gene denotes CD274 Gene:29126
2609 39756-39759 Gene denotes CD8 Gene:925
2610 38631-38639 Species denotes patients Tax:9606
2611 39158-39166 Species denotes patients Tax:9606
2612 39409-39417 Species denotes patients Tax:9606
2613 39749-39753 Species denotes LCMV Tax:11623
2614 38622-38630 Disease denotes COVID-19 MESH:C000657245
2615 39130-39145 Disease denotes lymphocytopenia MESH:D008231
2616 39149-39157 Disease denotes COVID-19 MESH:C000657245
2617 39239-39248 Disease denotes infection MESH:D007239
2618 39274-39289 Disease denotes viral infection MESH:D001102
2619 39394-39408 Disease denotes critically ill MESH:D016638
2620 39621-39637 Disease denotes viral infections MESH:D001102
2621 39700-39709 Disease denotes infection MESH:D007239
2637 39892-39895 Gene denotes CD8 Gene:925
2638 40047-40050 Gene denotes CD8 Gene:925
2639 40637-40642 Gene denotes IL-10 Gene:3586
2640 40647-40652 Gene denotes TGF-β Gene:7039
2641 40656-40659 Gene denotes CD8 Gene:925
2642 40813-40816 Gene denotes CD8 Gene:925
2643 40763-40771 Species denotes patients Tax:9606
2644 40900-40908 Species denotes patients Tax:9606
2645 40922-40933 Chemical denotes lactic acid MESH:D019344
2646 39881-39890 Disease denotes infection MESH:D007239
2647 40108-40146 Disease denotes immunodeficiency virus (HIV) infection MESH:D015658
2648 40390-40399 Disease denotes infection MESH:D007239
2649 40503-40518 Disease denotes viral infection MESH:D001102
2650 40754-40762 Disease denotes COVID-19 MESH:C000657245
2651 40891-40899 Disease denotes COVID-19 MESH:C000657245
2665 41162-41165 Gene denotes CD4 Gene:920
2666 41510-41525 Species denotes influenza virus Tax:11308
2667 41527-41531 Species denotes H5N1 Tax:102793
2668 41920-41928 Species denotes SARS-CoV Tax:694009
2669 42039-42049 Species denotes SARS-CoV-2 Tax:2697049
2670 41276-41287 Species denotes respiratory Tax:12814
2671 41126-41129 Species denotes HIV Tax:12721
2672 41057-41072 Disease denotes lymphocytopenia MESH:D008231
2673 41114-41124 Disease denotes infections MESH:D007239
2674 41497-41506 Disease denotes infection MESH:D007239
2675 41562-41571 Disease denotes infection MESH:D007239
2676 41773-41782 Disease denotes infection MESH:D007239
2677 42132-42140 Disease denotes COVID-19 MESH:C000657245
2699 42386-42391 Gene denotes HMGB1 Gene:3146
2700 43084-43092 Species denotes patients Tax:9606
2701 43684-43692 Species denotes Patients Tax:9606
2702 43902-43910 Species denotes Patients Tax:9606
2703 44008-44016 Species denotes patients Tax:9606
2704 44247-44254 Species denotes patient Tax:9606
2705 44348-44356 Species denotes patients Tax:9606
2706 42381-42384 Chemical denotes ROS
2707 42290-42305 Disease denotes lymphocytopenia MESH:D008231
2708 42440-42448 Disease denotes infected MESH:D007239
2709 42780-42795 Disease denotes lymphocytopenia MESH:D008231
2710 42861-42876 Disease denotes lymphocytopenia MESH:D008231
2711 42904-42912 Disease denotes COVID-19 MESH:C000657245
2712 43261-43269 Disease denotes COVID-19 MESH:C000657245
2713 43270-43279 Disease denotes infection MESH:D007239
2714 43316-43331 Disease denotes lymphocytopenia MESH:D008231
2715 43389-43398 Disease denotes infection MESH:D007239
2716 43582-43590 Disease denotes COVID-19 MESH:C000657245
2717 43698-43713 Disease denotes lymphocytopenia MESH:D008231
2718 44215-44223 Disease denotes COVID-19 MESH:C000657245
2719 44395-44399 Disease denotes ARDS MESH:D012128
2722 44495-44502 Species denotes patient Tax:9606
2723 44806-44814 Disease denotes COVID-19 MESH:C000657245

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T433 0-38 Sentence denotes Dysfunctional Adaptive Immune Response
T434 39-113 Sentence denotes A subset of COVID-19 patients displays robust activation of T and B cells.
T435 114-279 Sentence denotes These exaggerated T cell responses are specifically present in patients who manifest severe disease conditions and need mechanical ventilation (Herold et al., 2020).
T436 280-514 Sentence denotes Further, analysis of peripheral blood, BALF, and post-mortem lung samples of deceased patients reveal robust activation of T and B cells with a concomitant decline in the number of these cells (Kaneko et al., 2020; Liao et al., 2020).
T437 515-697 Sentence denotes Thus, it is becoming apparent that a subset of COVID-19 patients displays activated adaptive immune response, which augments hyper-inflammation, thereby leading to disease worsening.
T438 698-948 Sentence denotes In the subsequent section, we will specifically discuss the intricate role of T and B cells concerning their contribution to the development of the immunopathological state and how this critical antiviral immune response becomes awry during COVID-19.
T439 950-1011 Sentence denotes Proinflammatory Cytokines Secreted by T Cells During COVID-19
T440 1012-1175 Sentence denotes Hyperinflammatory condition mediated by cytokines, chemokines and associated proinflammatory molecules which are secreted by both innate and adaptive immune cells.
T441 1176-1362 Sentence denotes However, during COVID-19, the relative contribution of adaptive immune cells towards proinflammatory molecules is still emerging, while the published studies suggest a complex interplay.
T442 1363-1568 Sentence denotes Profiling of 21 cytokines and chemokines in 39 patients and 24 healthy controls revealed increased levels of TH1 specific cytokines like IFN-γ, IL-2, and IL-12, and TH17 specific IL-17 in peripheral blood.
T443 1569-1699 Sentence denotes In comparison to the mild cases (n = 19), patients with severe disease (n = 10) condition had increased levels of these cytokines.
T444 1700-1819 Sentence denotes The limitation of this study was that the median age of severe cases was higher than in mild cases (Song et al., 2020).
T445 1820-2003 Sentence denotes Similarly, Zhou et al. (2020b) reported hyperactivated TH1 cell response with increased secretion of IFN-γ, GM-CSF, and IL-6 and with more robust expression in ICU cases than non-ICU.
T446 2004-2304 Sentence denotes Considering the age, gender and other associated factors, a large number of other studies have now confirmed that COVID-19 patients have increased levels of TH1 specific cytokines, with more robust levels seen in severe than mild cases (Huang C. et al., 2020; Xu Z. et al., 2020; Zhou et al., 2020b).
T447 2305-2446 Sentence denotes Similarly, CD8+ T cell-specific cytokines increased in COVID-19 patients, more pronounced in severe than mild condition (Zhou et al., 2020b).
T448 2447-2594 Sentence denotes Increased expression of GM-CSF was found in CD8+ T cells from ICU patients than non-ICU, while no difference was observed in IL-6 and TNF-α levels.
T449 2595-2892 Sentence denotes PBMCs derived from COVID-19 patients and stimulated in vitro showed an increase in expression of CCL2, CXCL10, Eotaxin, and IL-1RA, and stimulation of CD8+ T cells were associated with an increase in IFN-γ levels, which indicates the functional responsiveness of these cells (Mathew et al., 2020).
T450 2893-2994 Sentence denotes These studies thus suggest a robust activation of TH1 specific and CD8+ T cells in COVID-19 patients.
T451 2995-3107 Sentence denotes On the contrary, there are studies which show decreased cytokine expression by T cells in severe COVID-19 cases.
T452 3108-3238 Sentence denotes A study by Zheng H.Y. et al. (2020) showed a lower expression of IFN-γ, IL-2, and TNF-α in CD4+ T cells derived from severe cases.
T453 3239-3335 Sentence denotes Similarly, a decrease in IL-2+ CD8+ and IFN-γ+ CD8+ cells was also observed (Diao et al., 2020).
T454 3336-3627 Sentence denotes Although most studies point toward the robust activation and release of proinflammatory cytokines by CD4+ and CD8+ T cells, the discrepancy in latter studies could attribute to the functional exhaustion of these cells, which will we will discuss in section “Lymphocytopenia During COVID-19.”
T455 3628-3857 Sentence denotes Besides the presence of TH1 cytokines, TH2 cytokines like IL-4 and IL-5 and TH17 specific IL-17 were reported in some studies (Han et al., 2020; Huang C. et al., 2020; Song et al., 2020; Tan L. et al., 2020b; Xu Z. et al., 2020).
T456 3858-4032 Sentence denotes The presence of TH2 cytokines usually seen in mild cases may be accounted for by the presence of other respiratory conditions with TH2 specific response (Laing et al., 2020).
T457 4033-4363 Sentence denotes Overall, all these studies point toward the increased secretion of proinflammatory molecules by T lymphocytes in COVID-19, albeit with a heterogeneous response, which may be due to the variation in the age of the patients studied, different sampling times and presence of the comorbid condition, which needs further investigation.
T458 4365-4434 Sentence denotes Activation and Exhaustion Status of T Cells During COVID-19 Infection
T459 4435-4570 Sentence denotes The activation, exhaustion, and proliferation response of T and B cells are considered an integral determinant of the disease severity.
T460 4571-4842 Sentence denotes Unequivocally, studies have shown lymphocytopenia as a predictive marker which may also determine the disease severity in COVID-19 patients (Liu J. et al., 2020; Tan L. et al., 2020b; Wang et al., 2020b; Yang A.P. et al., 2020; Yang X. et al., 2020; Zhang et al., 2020a).
T461 4843-4958 Sentence denotes However, contradictory reports exist regarding the functional and exhaustion status of these cells during COVID-19.
T462 4959-5167 Sentence denotes Further, understanding these changes throughout the disease has remained a challenge, considering the complexity in the underlying immune response, comorbid condition, and previous exposure to the infections.
T463 5168-5327 Sentence denotes Peripheral blood study of a single patient (50-year male) revealed robust activation of CD4+ and CD8+ T cells marked by HLA-DR expression (Xu Z. et al., 2020).
T464 5328-5415 Sentence denotes However, the major limitation of this study was that only a single patient was studied.
T465 5416-5554 Sentence denotes Using multiparameter flow cytometry approach Kuri-Cervantes et al. (2020) studied 35 COVID-19 patients (n = 7 moderate and n = 28 severe).
T466 5555-5734 Sentence denotes The study revealed that a subset of severe cases displayed T cell activation as revealed by CD38 and HLA-DR expression in both CD4+ and CD8+ T cells (Kuri-Cervantes et al., 2020).
T467 5735-5929 Sentence denotes By analyzing, PBMCs derived from healthy (n = 5) and severe cases (n = 16), the authors found an increase in the percentage of cytotoxic CD8+ memory cells as revealed by perforin and granzyme B.
T468 5930-6045 Sentence denotes Similarly, a subset of severe cases had increased Ki-67 expressing CD4+ and CD8+ T cells, displaying proliferation.
T469 6046-6238 Sentence denotes At the same time, these findings revealed heterogeneous T cell response but overall suggested a skew towards the activation and proliferation status of these cells in a subset of severe cases.
T470 6239-6408 Sentence denotes The limitation of this finding is again the small sample size which may be the reason for the inconclusive findings of the T cell status concerning the disease severity.
T471 6409-6567 Sentence denotes Similar multiparameter flow cytometry approach was used by De Biasi et al. (2020) to study T cell response in healthy (n = 12) and COVID-19 patients (n = 21).
T472 6568-6678 Sentence denotes The study found activated status of CD4+ and CD8+ T cells as revealed by an increase in CD38+HLA-D population.
T473 6679-6821 Sentence denotes Activated status of the CD4+ T and CD8+ T cells was further confirmed by production of IFN-γ, TNF-α, IL-17, and IL-2 when stimulated in vitro.
T474 6822-7000 Sentence denotes The major limitation of this study was that the sample size was small, which restricted the comparison between the T cell responses across patients with various disease severity.
T475 7001-7143 Sentence denotes In another study, Song et al. (2020) showed the activated status of CD8+ T but not CD4+ T cells in severe (n = 9) than mild (n = 20) patients.
T476 7144-7300 Sentence denotes The activated status of CD8+ T cells reflected by the increased population of CD38+HLA-DR+, HLA-DR+, and CD38+HLA-DR+ marker expression (Song et al., 2020).
T477 7301-7466 Sentence denotes Further, CD8+ T cells were associated with increased cytolytic markers like granzyme B, perforin, and granulysin with more pronounced activation in severe than mild.
T478 7467-7594 Sentence denotes While across studies, it has become apparent that T cells show robust activation status in severe cases than mild and moderate.
T479 7595-7698 Sentence denotes These cells also exhibit exhaustion status, which may occur concomitantly with their activation status.
T480 7699-7922 Sentence denotes Deep immune profiling of 125 patients by Mathew et al. (2020) demonstrated that both CD4+ and CD8+ T cells exhibit activation status as revealed by coexpression of CD38 and HLA-DR which corresponded to the disease severity.
T481 7923-8048 Sentence denotes Further, these cells were also associated with concomitant expression of proliferation (Ki-67) and exhaustion (PD-1) markers.
T482 8049-8247 Sentence denotes This study thus suggests that hyperactivated status of T cells may eventually lead to their exhaustion, and thus these functional and exhaustion features of T cells may reflect the disease severity.
T483 8248-8402 Sentence denotes A study by Zheng M. et al. (2020) in a cohort of 68 COVID-19 patients revealed extensive CD8+ T cell exhaustion as shown by increased expression of NKG2A.
T484 8403-8630 Sentence denotes Intracellular cytokine staining (IFN-γ, IL-2, and granzyme B) further confirmed a decrease in the activation profile of these cells, which was more pronounced in severe (n = 55) than mild (n = 13) cases (Zheng M. et al., 2020).
T485 8631-8870 Sentence denotes As mentioned earlier in the study by Song et al. (2020) and De Biasi et al. (2020) T cells showed activation status that was also concomitantly seen with express of exhaustion markers PD-1 and TIM-3 on CD8+ T cells and TIM-3 on CD4+ cells.
T486 8871-8949 Sentence denotes The exhaustion was more pronounced in severe cases (n = 9) than mild (n = 20).
T487 8950-9055 Sentence denotes However, both these studies did not consider the age of the patients when comparing the disease severity.
T488 9056-9173 Sentence denotes Further, the study did not consider the temporal dynamics of these cells while measuring their functional properties.
T489 9174-9385 Sentence denotes In agreement, Zheng H.Y. et al. (2020) showed reduced functional activation of CD4+ T cells in severe (n = 6) than mild (n = 10) group as revealed by a lower proportion of IFN-γ and IL-2 expressing CD4+ T cells.
T490 9386-9485 Sentence denotes While IL-2 expressing CD4+ T cell population was also significantly lower in healthy vs mild group.
T491 9486-9666 Sentence denotes Further, CD8+ T cells displayed exhaustion as revealed by an increase in CTLA-4 in severe cases than mild and TGIT in severe than healthy, while PD-1 was more in mild than healthy.
T492 9667-9779 Sentence denotes Exhaustive states of both CD4+ and CD8+ T cells were also present in patients requiring ICU (Diao et al., 2020).
T493 9780-9911 Sentence denotes The exhaustive state was apparent by an increase in PD-1 and Tim-3 expression, which was more pronounced in CD8+ than CD4+ T cells.
T494 9912-10254 Sentence denotes These studies along with others thus suggest that robust activation followed by the exhaustion of CD4+ and CD8+ T cells may be responsible for the disease progression, while therapies like checkpoint inhibitors (anti-PD-1 antibody; NCT04268537) which may prevent T cell exhaustion and restore their functional state may benefit some patients.
T495 10255-10353 Sentence denotes More studies are necessary before using such an approach can be used for therapeutic intervention.
T496 10354-10473 Sentence denotes A post-mortem study of deceased COVID-19 patients conducted to find the status of these cells at the site of infection.
T497 10474-10643 Sentence denotes T cell profiling and their activation status in the lungs revealed an increase in the presence of CD4+ and CD8+ T cells exhibiting activation status (Song et al., 2020).
T498 10644-10757 Sentence denotes This increase in infiltration of these cells was concomitantly associated with their decline in peripheral blood.
T499 10758-10871 Sentence denotes Others presented a similar activation profile of CD8+ T cells (Kuri-Cervantes et al., 2020; Mathew et al., 2020).
T500 10872-11217 Sentence denotes This activated state of CD8+ T cells was consistently present across studies, with reports of immune profiling in BALF samples from COVID-19 patients, which showed increased CD4+ and CD8+ T cells in the lungs in both mild and severe cases along with the increased expression of CD8+ T cell cytolytic genes like GZMA and GZMK (Liao et al., 2020).
T501 11218-11416 Sentence denotes Thus, these studies point towards heterogeneous activation and exhaustion status of T cells in peripheral blood, while a more consistent activated status at the site of infection (lungs) (Figure 4).
T502 11417-11579 Sentence denotes FIGURE 4 T and B cell immune response during SARS-CoV-2 infection. (A) The activation status of CD4+ and CD8+ T in the circulation is indicated by CD38+ HLA-DR+.
T503 11580-11717 Sentence denotes These activated T cells are further recruited at the sites of infection (initially lungs) in the presence of their respective chemokines.
T504 11718-11935 Sentence denotes The activated CD4+ T cells are marked by the presence of cytokines like IFN-γ, IL-2, IL-12, IL-6, and GM-CSF, whereas activated CD8+T (cytotoxic T cells) are marked by the secretion of granzymes, perforins, and IFN-γ.
T505 11936-12264 Sentence denotes During SARS-CoV-2 infection, activated CD8+T cells exhibiting increased expression of granzyme A, B, and K (GZM-B, GZM-A, and GZM-K) were found in the lungs (Liao et al., 2020; Song et al., 2020; Zheng M. et al., 2020). (B) T cells were also found to exhibit exhausted state as marked by the expression of PD-1, Tim3, and NKG2A.
T506 12265-12531 Sentence denotes However, most studies showing exhausted T cells were confined to the peripheral blood, while lungs were mostly shown to have activated T cells but with concomitant expression of some exhaustive markers, suggesting that the activation state is followed by exhaustion.
T507 12532-12904 Sentence denotes The exhaustive T cells are marked by the reduced expression of respective chemokines and cytolytic granules. (C) Similarly, antibody-producing B cells (plasmablasts; PB) were shown to exhibit activation status as reflected by the expression of IL4R, TNFSF13B, and XBP1, while at the same time, the exhausted status of these cells was also reported in the peripheral blood.
T508 12905-12983 Sentence denotes Exhaustive state of B cells is reflected by a decrease in antibody production.
T509 12984-13173 Sentence denotes Further, it appears that unlike CD4+ T cells, the activation status of CD8+ T cells is more pronounced, which may account for their relatively faster exhaustion state (Wherry et al., 2007).
T510 13174-13382 Sentence denotes Interestingly, by studying the CD8+T cell response in convalescent patients, Habel et al. (2020) found that these cells skewed toward naïve, stem cell and central memory phenotypes, with low effector T cells.
T511 13383-13499 Sentence denotes While comparing the response with Influenza A viruses, SARS-CoV-2 directed CD8+ T exhibit relatively lower response.
T512 13500-13842 Sentence denotes Others have also shown a significant decline in CD8+ T cell subsets (naïve, effector, and memory) in COVID-19 patients, with a more pronounced decline in critical (n = 3) than severe (n = 5), and mild (n = 4), suggesting their robust activation during early disease followed by exhaustion during the critical condition (Wang W. et al., 2020).
T513 13843-13963 Sentence denotes On the contrary, CD4+ T cells were higher in the mild and critical cases than severe cases and healthy control (n = 12).
T514 13964-14193 Sentence denotes These results imply that the overall T cell response is heterogenous, while CD8+ response, though robust during infection and correlates with the disease severity; but the response may not be long-lasting, at least in some cases.
T515 14194-14275 Sentence denotes Both CD4+ and CD8+ T cells also exhibit dysregulated response (Qin et al., 2020).
T516 14276-14394 Sentence denotes Decreased levels of CD4+ regulatory cells as marked by CD3+ CD4+ CD25+ CD127low+ population was found in severe cases.
T517 14395-14492 Sentence denotes Similarly, the study found decreased CD8+ suppressor T cells (CD3+, CD8+, CD28+) in severe cases.
T518 14493-14721 Sentence denotes Overall, more comprehensive studies are warranted with larger cohort size, to profile local vs systemic T cell response and persistence simultaneously, and correlate these responses with disease severity in age-matched patients.
T519 14723-14763 Sentence denotes Impaired B Cell Response During COVID-19
T520 14764-14888 Sentence denotes Regulated and controlled B cell response is critical for the effective immune response against the CoVs, as discussed above.
T521 14889-15006 Sentence denotes However, under certain conditions, B cell response may be detrimental and aggravate the underlying disease condition.
T522 15007-15194 Sentence denotes A notion has emerged, which suggests that in COVID-19 patients, B cell number though reduced, but these cells display robust activation in some cases that correlate with disease severity.
T523 15195-15380 Sentence denotes Deep immune profiling integrated with computational approach revealed intricate relations of B cell response with clinical parameters at various stages of the COVID-19 disease severity.
T524 15381-15493 Sentence denotes These cells express proliferation (Ki67+), differentiation (CD27+ CD38+), as well as exhaustion markers (PD-1+).
T525 15494-15661 Sentence denotes More robust expression of these markers was observed in severe cases compared to mild-moderate, with an overall decrease in memory B cell number (Mathew et al., 2020).
T526 15662-15816 Sentence denotes Further, 70% of the patients reported have IgG and IgM S protein-specific antibodies, suggesting activation status of the antibody-secreting plasmablasts.
T527 15817-15988 Sentence denotes Thus, this study shows that B cells, in severe cases, display concomitant activation and exhaustion markers, while mild cases or healthy controls showed a normal response.
T528 15989-16085 Sentence denotes However, how this activated status of B cells had an impact on disease severity was not studied.
T529 16086-16306 Sentence denotes By looking at the alleged relationship of activated B cells with disease severity, Woodruff et al. (2020) showed robust activation status of extrafollicular B cells which resembled their behavior in autoimmune condition.
T530 16307-16548 Sentence denotes The activation status of these cells was found more pronounced in critically ill patients (n = 10) than non-critical (n = 7) and healthy control (n = 17), which correlated with SARS-CoV-2-specific antibody production and disease progression.
T531 16549-16767 Sentence denotes Further, an increase in antibody-secreting cells (ASCs) was found in critically ill cases compared to non-severe cases along with an increase in S protein-specific antibodies, probably with a non-neutralizing property.
T532 16768-16978 Sentence denotes This study shows that in some patients with a critical disease condition, robust B cell response and presence of SARS-CoV-2 antigen-specific antibodies may be associated with worsening of the disease condition.
T533 16979-17066 Sentence denotes The ASCs were identified as the population of cells with CD138+ and CD21low expression.
T534 17067-17155 Sentence denotes However, no comparison was drawn between various age groups concerning disease severity.
T535 17156-17292 Sentence denotes While across studies, B cell activation is apparent in severe cases, it is subsequently associated with a sharp decline in their number.
T536 17293-17433 Sentence denotes Various mechanisms may be responsible for this decline, among which B cell exhaustion is one, but still poorly understood (Yi et al., 2010).
T537 17434-17541 Sentence denotes A recent study has provided mechanistic insights into how some cases of COVID-19 exhibit low B cell number.
T538 17542-17770 Sentence denotes Kaneko et al. (2020) studied the post-mortem samples (n = 11) of thoracic lymph nodes and spleens and found that Bcl-6+ germinal center (GC) B cells highly reduced in these patients in comparison to non-COVID-19 control (n = 6).
T539 17771-17919 Sentence denotes This decline in GC was also associated with a decrease in TFH cell differentiation and an increase in the number of TH1 cells (Kaneko et al., 2020).
T540 17920-17998 Sentence denotes Further, an increase in expression of TNF-α levels was found in the follicles.
T541 17999-18231 Sentence denotes Based on previous studies that TNF-α inhibits the lymphoid follicular development, and high levels of this pleiotropic cytokine is the hallmark of COVID-19, the authors attributed the reduction in GC to high levels of this cytokine.
T542 18232-18405 Sentence denotes In addition to the study in post-mortem samples, the authors conducted B cell analysis in peripheral blood samples from COVID-19 patients at different stages of the disease.
T543 18406-18702 Sentence denotes In line with the post-mortem data, patients with severe disease condition (n = 25) had a significant decrease in the number of naïve B cells, CD19+ B cells, and follicular B cell subsets in comparison to the healthy controls (n = 4), convalescent patients (n = 39), and moderate patients (n = 4).
T544 18703-18797 Sentence denotes Thus, this study provides a probable cause for the B cell decline in severe cases of Covid-19.
T545 18798-18969 Sentence denotes However, there was a significant difference in the mean age of severe patients (higher between 58 and 60) than the control, convalescent, and moderate group (30–45 years).
T546 18970-19055 Sentence denotes Thus, the effect of age on the decline in B cells cannot be undermined in this study.
T547 19056-19255 Sentence denotes More studies are needed to specifically look into the B cell number and activation status in COVID-19 patients concerning the disease severity to get a clear understanding of the role of these cells.
T548 19257-19286 Sentence denotes Antibody Dynamics in COVID-19
T549 19287-19425 Sentence denotes Antibody-based therapy is being considered as a potential intervention for COVID-19, owing to the successful preliminary results with CPT.
T550 19426-19604 Sentence denotes However, this treatment approach may be associated with the risk of exacerbating COVID-19 severity, based on the experience from previous viral infections (Salazar et al., 2017).
T551 19605-19823 Sentence denotes Further, like previous SARS-CoV infections, antibody response may not always favor viral clearance, instead of contributing to the underlying immunopathology in some instances (Zhang et al., 2006; Newton et al., 2016).
T552 19824-20053 Sentence denotes This immunopathological state may thus attribute to factors such as robust and unregulated activation of B cells, ADE, presence of cross-reactive but non-neutralizing antibodies, and failure to mount a controlled B cell response.
T553 20054-20250 Sentence denotes Across studies, higher antibody titers detected in patients with severe and critical condition in comparison to non-severe cases (Long et al., 2020a; Gudbjartsson et al., 2020; Zhao et al., 2020).
T554 20251-20516 Sentence denotes One can argue that higher antibody titer should be beneficial to provide an adequate antiviral response but can be countered by the finding that higher antibody titers found in a large number of severe cases and patients requiring ventilation (Kaneko et al., 2020).
T555 20517-20680 Sentence denotes This contradiction is yet to resolve, and the emerging data suggest that higher antibody response may reflect the over-activation and uncontrolled B cell response.
T556 20681-20805 Sentence denotes Zheng M. et al. (2020) showed the presence of RBD-specific IgG and IgA antibodies in patients with severe disease condition.
T557 20806-20881 Sentence denotes The study included 13 severe and 41 non-severe cases of various age groups.
T558 20882-21041 Sentence denotes Along with increased IgG and IgA levels, severe cases also had an increased number of antibody-secreting cells and TFH cells, which aid in antibody production.
T559 21042-21210 Sentence denotes Further, a close correlation of proinflammatory cytokines and chemokines like IL-6, CXCL10 and complement activation marker C5a found with the severe disease condition.
T560 21211-21338 Sentence denotes This study provided a direct relation of inflammatory response with humoral immune response in context to the disease severity.
T561 21339-21441 Sentence denotes However, the antigen-neutralizing property of these SARS-CoV-2 specific antibodies was not determined.
T562 21442-21625 Sentence denotes Further, a low sample size of severe cases was another limiting factor to provide a definitive conclusion that robust antibody response may positively correlate with disease severity.
T563 21626-21758 Sentence denotes Similarly, Zhao et al. (2020) studied antibody response in 173 clinically diagnosed COVID-19 patients with a median age of 48 years.
T564 21759-21911 Sentence denotes Among these, nine patients (three critical and six non-critical) studied longitudinally for the relation of antibody response with the disease severity.
T565 21912-21991 Sentence denotes Antibody titer was higher in the critical patients as compared to non-critical.
T566 21992-22205 Sentence denotes This higher titer of antibodies was not reflected by the clearance of the virus, thus suggesting that antibody response in critical cases may be associated with worse disease outcome rather than protective effect.
T567 22206-22303 Sentence denotes However, like other studies, this study also suffers from the same limitation of low sample size.
T568 22304-22518 Sentence denotes In line with the notion that antibody response is higher in severe patients, a large population study (n = 30,576 persons from Iceland) (Gudbjartsson et al., 2020) conducted in Iceland revealed similar observation.
T569 22519-22707 Sentence denotes The study provided a comprehensive account of the relation of antibody response concerning age, sex, body-mass index, drugs habits like smoking and the use of anti-inflammatory medication.
T570 22708-22876 Sentence denotes Results show that patients with smoking habit and who were on anti-inflammatory medication, had lower antibody levels, while body mass index had a positive association.
T571 22877-23066 Sentence denotes The data thus suggest that antibody response may not always favor clearance of the virus, but in some instances, higher antibody levels may make the patients more vulnerable to the disease.
T572 23067-23215 Sentence denotes This detrimental relation of antibody response with poor disease outcome was also prevalent in the previous SARS-CoV infection (Zhang et al., 2006).
T573 23216-23461 Sentence denotes In a study on the sera samples obtained from SARS-CoV infected patients, a faster S protein-specific antibody response was found in patients who did not survive (14.7 days), as compared with the patients who recovered from the disease (20 days).
T574 23462-23594 Sentence denotes Further, the antibody titer was significantly higher in the deceased patients with faster production than in the recovered patients.
T575 23595-23786 Sentence denotes To mechanistically understand why antibody response has a more detrimental effect than protective, Liu et al. (2019) studied viral antibody response in animal models (Chinese rhesus monkeys).
T576 23787-23956 Sentence denotes When animals infected with the SARS-CoV and adoptively transferred with anti-S protein IgG could not prevent the infection but instead displayed severe disease symptoms.
T577 23957-24154 Sentence denotes Presence of the S protein antibody abrogated wound healing, induced macrophage/monocyte infiltration into the lungs and caused the release of proinflammatory cytokine followed by acute lung injury.
T578 24155-24321 Sentence denotes This study thus demonstrated that the presence of S protein-specific antibody might have a deleterious effect in inducing lung injury, irrespective of the viral load.
T579 24322-24453 Sentence denotes However, since mechanistic details are difficult to discern in clinical samples, more studies in animal models need to be explored.
T580 24454-24743 Sentence denotes Further, owing to the dynamics of antibody response in clinical samples concerning underlying disease condition, age, and genetic factors; animal models will provide a cleaner system to delineate the antibody dynamics with respect to disease severity (Guan et al., 2020; Hou et al., 2020).
T581 24744-24873 Sentence denotes Contrary to B cell activation, some studies have shown lower antibody durability in both mild and severe cases (Yu et al., 2020).
T582 24874-25028 Sentence denotes In a longitudinal study on a 26-year-old woman with a moderate disease condition, antibody response disappeared within three months (Liu A. et al., 2020).
T583 25029-25230 Sentence denotes In a sizable cohort of samples, asymptomatic patients (n = 37 with median age 41 years) had relatively lower durability of the IgG and IgM antibodies in comparison to the symptomatic patients (n = 37).
T584 25231-25344 Sentence denotes Further, the viral shedding in the asymptomatic group was higher than the symptomatic group (Long et al., 2020b).
T585 25345-25547 Sentence denotes Similarly, Ibarrondo et al. has shown the same antibody durability in 34 COVID-19 patients with a mean age of 43 years when studied longitudinally for a period of upto 4 months (Ibarrondo et al., 2020).
T586 25548-25669 Sentence denotes The authors found a significant decline in IgG antibodies in the sera of convalescent patients with mostly mild symptoms.
T587 25670-25835 Sentence denotes A declining trend was seen for multiple SARS-CoV-2 antibodies like IgG N, IgM, IgG S1, and IgA S1 in the longitudinal analysis (n = 487) (Gudbjartsson et al., 2020).
T588 25836-25987 Sentence denotes In another longitudinal study, the disappearance of S and N protein-specific antibodies was observed within 3 months of recovery (Liu A. et al., 2020).
T589 25988-26316 Sentence denotes Based on these reports, we can infer that the antibody response in some COVID-19 patients may not be long-lasting, which poses a challenge for antibody-based therapy and vaccine research—further, these data caution towards chances of reinfection, as shown to be the case with other seasonal coronaviruses (Edridge et al., 2020).
T590 26317-26455 Sentence denotes However, larger cohort size and longer time frame longitudinal studies are needed to find the durability of antibody response in COVID-19.
T591 26456-26607 Sentence denotes Further, a comparison of various disease states with corresponding antibody response will provide clearer insight as to how this response is regulated.
T592 26608-26842 Sentence denotes It appears that in patients with severe disease symptoms, TNF-α may influence the GC and hence B cell number (Kaneko et al., 2020), whether the same holds for asymptomatic patients with compromised antibody durability remains elusive.
T593 26843-26976 Sentence denotes This dynamic antibody response is critical while considering convalescent plasma therapy (CPT) for severe or critically ill patients.
T594 26977-27109 Sentence denotes If a patient already has sufficient antibodies, CPT may not be a viable treatment option (Anderson et al., 2020; Duan et al., 2020).
T595 27110-27253 Sentence denotes While many studies have reported success with CPT, some studies have shown no added beneficial effects with this approach (Li L. et al., 2020).
T596 27254-27569 Sentence denotes Thus, pre-caution should be taken while using this approach, i.e., if a patient already has adequate virus-specific antibodies or presence of cross-reactive and auto-antibodies, plasma therapy may do more harm than good, which may be the reason with non-responsiveness of CPT in some patients (Nagoba et al., 2020).
T597 27571-27635 Sentence denotes SARS-CoV-2 Antibody Cross-Reactivity and Neutralization Property
T598 27636-27720 Sentence denotes A range of SARS-CoV specific antibodies have shown cross-reactivity with SARS-CoV-2.
T599 27721-27805 Sentence denotes These antibodies target S protein and mostly the RBD region (Hoffmann et al., 2020).
T600 27806-27954 Sentence denotes Monoclonal antibodies against SARS-CoV such as CR3022 and S309 have shown cross-reactivity with SARS-CoV-2 (Pinto et al., 2020; Wang et al., 2020a).
T601 27955-28211 Sentence denotes Similarly, in a study of 285 patients, S protein-specific antibodies from SARS-CoV showed cross-reactivity with CoV-2 N protein in a subset of patients (n = 5), whereas no-cross reactivity was detected against S1 subunit of SARS-CoV-2 (Long et al., 2020a).
T602 28212-28329 Sentence denotes Thus, the cross-reactive nature of some of these antibodies may ensure their efficacy against multiple coronaviruses.
T603 28330-28472 Sentence denotes However, at the same time, these cross-reactive antibodies should also have neutralizing property; otherwise, they will have a harmful effect.
T604 28473-28597 Sentence denotes A recent study explored the cross-reactive and neutralization property of these antibodies simultaneously (Lv et al., 2020).
T605 28598-28804 Sentence denotes This study used plasma from 15 SARS-CoV-2 and 7 SARS-CoV patients and found a high degree of cross-reactivity between the antibody response from these samples, but a very low antibody neutralizing property.
T606 28805-28886 Sentence denotes These results were further confirmed in animal models of SARS-CoV-2 and SARS-CoV.
T607 28887-29065 Sentence denotes While S309 antibody showed better neutralization property against SARS-CoV-2, the neutralization properties for CR3022 are not yet known (Pinto et al., 2020; Wang et al., 2020a).
T608 29066-29264 Sentence denotes Thus, although a high degree of cross-reactivity of the antibody response from SARS-CoV-2 can be found with other related CoVs, the neutralizing property of these antibodies may be epitope specific.
T609 29265-29491 Sentence denotes The weak neutralizing property of such cross-reactive antibodies should thoroughly be tested before usage as a therapeutic intervention, to prevent the complications which may arise due to antibody-dependent enhancement (ADE).
T610 29492-29574 Sentence denotes These factors also become essential while considering convalescent plasma therapy.
T611 29575-29692 Sentence denotes In an elegant recent study, Cao et al. (2020) performed sc-RNA-seq of B cells from 60 convalescent COVID-19 patients.
T612 29693-29817 Sentence denotes The study led to the identification of 14 neutralizing antibodies, among which one (BD-368-2) showed the most potent effect.
T613 29818-29948 Sentence denotes BD-368-2 was further explored for its efficacy in animal models and showed therapeutic potential in SARS-CoV-2 transgenic animals.
T614 29949-30189 Sentence denotes Further, the study suggested the use of two different monoclonal antibodies targeting different epitopes as a more viable therapeutic intervention than a single antibody, which is impressive considering the emerging mutations in SARS-CoV-2.
T615 30190-30346 Sentence denotes Thus, more research in this direction is needed to find antibodies with potent neutralization property for targeted therapy to alleviate the disease burden.
T616 30348-30390 Sentence denotes Antibody Dependent Enhancement in COVID-19
T617 30391-30501 Sentence denotes Non-neutralizing but cross-reactive antibodies may lead to ADE and hence enhance the immunopathological state.
T618 30502-30747 Sentence denotes ADE can occur through various pathways, the most important among which include endocytosis of antibody conjugated virus by the phagocytic cells (via Fc gamma receptor IIa (FcγRIIa) and enhanced antibody immune complex formation (Kulkarni, 2020).
T619 30748-30953 Sentence denotes Virus uptake by the phagocytic cells induces robust propagation and hence may further aggravate the disease condition, while antibody immune complex formation may generate a high pro-inflammatory response.
T620 30954-31151 Sentence denotes Experience from previous viral infections has shown that ADE may lead to worse disease outcome in some patients with the presence of non-neutralizing antibodies, reviewed by Lee W.S. et al. (2020).
T621 31152-31247 Sentence denotes In vitro studies on monocytes and macrophages have shown ADE in SARS-CoV (Flipse et al., 2016).
T622 31248-31375 Sentence denotes However, no definitive clinical data is available that indicates the occurrence of ADE during SARS-CoV or SARS-CoV-2 infection.
T623 31376-31598 Sentence denotes Nevertheless, based on the substantial cross-reactivity between various epitope regions of CoVs, some patients may exhibit ADE due to the presence of cross-reactive but non-neutralizing antibodies from previous infections.
T624 31600-31634 Sentence denotes Unconventional T Cells in COVID-19
T625 31635-31789 Sentence denotes Bronchial alveolar lavage fluid analysis of 3 COVID-19 patients reveals a high number of NKT cells during the acute phase of infection (Kim et al., 2020).
T626 31790-31865 Sentence denotes This increase in NKT cells was similarly reflected in the peripheral blood.
T627 31866-31953 Sentence denotes Conversely, a decline in the number of these cells was found during the recovery phase.
T628 31954-32151 Sentence denotes These results thus suggest a close correlation of the NKT cell activity in COVID-19 and the presence of these cells may be required for the clearance of virus during the initial phase of infection.
T629 32152-32314 Sentence denotes Concomitantly, increased infiltration and activity of these cells may lead to a more severe outcome associated with eosinophilic pneumonia, as shown in one study.
T630 32315-32443 Sentence denotes However, no direct correlation of these cells types with disease severity was found, probably due to meagre sample size (n = 3).
T631 32444-32614 Sentence denotes Further, the samples used in this study were collected at different time points after the onset of symptoms, which may have complicated the interpretation of the results.
T632 32615-32918 Sentence denotes In another study on 30 COVID-19 patients with a varied range of disease severity from mild, moderate to severe, a reduction in the total peripheral blood NKT cells was seen across groups, with no difference in the overall number between ICU (n = 10) and non-ICU patients (n = 11) (Mazzoni et al., 2020).
T633 32919-33125 Sentence denotes Similarly, a study by Jouan et al. (2020) found a decrease in NKT and MAIT cells in the peripheral blood of COVID-19 patients (n = 30, with varied disease severity) as compared to healthy controls (n = 20).
T634 33126-33401 Sentence denotes This decline in circulating MAIT cells was concomitantly associated with an increase in these cells in the endotracheal aspirates (ETA) obtained from critically ill patients who needed mechanical ventilation (n = 12), while no changes in NKT cell number in ETA were detected.
T635 33402-33561 Sentence denotes The presence of circulating IL-18 reflected the activation of these cells, and the expression of PD-1 suggested subsequent exhaustion throughout the infection.
T636 33562-33719 Sentence denotes This study thus indicates that the presence of the activated status of these unconventional T cells may serve as a predictive assessment of disease severity.
T637 33720-33955 Sentence denotes More research about the activation, proliferation and differentiation status of these cells to the disease severity and local vs systemic effect is needed to fully understand their contribution in COVID-19 (Chen and John Wherry, 2020).
T638 33957-33988 Sentence denotes Lymphocytopenia During COVID-19
T639 33989-34265 Sentence denotes A drastic decrease in the number of circulating lymphocytes (lymphocytopenia) in severe and critically ill COVID-19 patients is now well appreciated (Huang C. et al., 2020; Liao et al., 2020; Liu et al., 2020a; Mathew et al., 2020; Zhou F. et al., 2020; Zhou P. et al., 2020).
T640 34266-34392 Sentence denotes Interestingly, restoration in the lymphocyte count is also consistently seen during the recovery phase (Chen Y. et al., 2020).
T641 34393-34529 Sentence denotes Based on these early findings, lymphocytopenia is considered a predictive indicator of COVID-19 disease severity (Tan L. et al., 2020b).
T642 34530-34748 Sentence denotes Although the molecular mechanisms associated with lymphocytopenia during SARS-CoV-2 are not known, emerging evidence suggests the role of multiple factors based on the correlations drawn from previous viral infections.
T643 34749-35077 Sentence denotes The decline in lymphocyte numbers in circulation can be attributed to altered chemokine and cytokine signaling responsible for the recruitment and activation/inhibition of these cells, increased infiltration to the site of infection, and cell death by apoptosis and/or necrosis (Wherry and Kurachi, 2015; Walling and Kim, 2018).
T644 35078-35264 Sentence denotes Immune profiles of COVID-19 patients show adequate levels of chemokines and cytokines involved in the maintenance of T and B cell phenotypes (Yang X. et al., 2020; Yang Y. et al., 2020).
T645 35265-35377 Sentence denotes Chemokines and cytokines responsible for CD8+ T cells priming and chemotaxis were also detected in the patients.
T646 35378-35608 Sentence denotes Similarly, cytokines responsible for B cell activation and proliferation signals were sufficiently present, thus excluding the possibility that lymphocytopenia may be a result of impaired activation signals or chemokine signaling.
T647 35609-35836 Sentence denotes Interestingly, a recent study suggests that severely ill COVID-19 patients had lower levels of activated (CD11a+) and terminally differentiated (CD57+) peripheral blood CD4+ and CD8+ T cells (which are also S-protein reactive).
T648 35837-35975 Sentence denotes The decline in the number of these cells can attribute to their concomitant migration to the infected regions under inflammatory response.
T649 35976-36170 Sentence denotes Similarly, another study has shown lymphocytopenia in peripheral blood along with a concomitant increase in the activation profile and the number of these cells in the lungs (Song et al., 2020).
T650 36171-36327 Sentence denotes Homing of these activated T cells to the site of infection may thus be associated with the worsening of the disease by amplifying the proinflammatory state.
T651 36328-36430 Sentence denotes A single patient analysis revealed increased CD4+ and CD8+ T cells in the BALF (Voiriot et al., 2020).
T652 36431-36642 Sentence denotes ScRNA-seq in BALF followed by cluster analysis revealed the presence of CD8+ T cells with proliferative phenotype in severe cases, whereas moderate cases exhibited clonal expansion phenotype (Liao et al., 2020).
T653 36643-36919 Sentence denotes From these accounts, it is indicative that increased migration of activated T cells to the site of infection may be one of the reasons for lymphocytopenia (in the blood) and the remaining T cells in the blood may eventually become dysfunctional (exhausted) as discussed below.
T654 36920-37074 Sentence denotes The decline in circulating lymphocyte number in COVID-19 patients can also attribute to the ‘exhausted’ state of these cells (Chen and John Wherry, 2020).
T655 37075-37244 Sentence denotes The heightened viral load and presence of specific inhibitory signals bring about changes in the transcriptional and effector profile of T cells in a coordinated manner.
T656 37245-37440 Sentence denotes Initially, they lose their property to secrete effector cytokines and gradually proceed to reduced expression of essential maintenance and activation surface receptors (Wherry and Kurachi, 2015).
T657 37441-37631 Sentence denotes A subsequent increase in the expression of inhibitory receptors and associated morphological changes result in the elimination of these cells from the circulation (Wherry and Kurachi, 2015).
T658 37632-37907 Sentence denotes CD4+ T cell exhaustion determines their insufficient secretion of effector molecules like IL-2, IL-10, IL-21, IFN-γ and TNF-α with a concomitant increase in inhibitory molecular signaling by PD-1, CTLA-4, LAG-3, CD244 (2B4), and TIM-3 (Blank et al., 2019; Dong et al., 2019).
T659 37908-38024 Sentence denotes Similarly, CD8+ T cell exhaustion is determined by reduced expression of IL-2, IFN-γ, TNF-α, and cytolytic granules.
T660 38025-38286 Sentence denotes Besides, decreased expression of T cell maintenance receptors CD122 and CD127, and increase in inhibitory receptor signaling via PD-1, CTLA-4, NKG2A, TIGIT, LAG-3, CD244 (2B4), and CD160 also mark their exhaustion (Wherry and Kurachi, 2015; Blank et al., 2019).
T661 38287-38511 Sentence denotes B cell exhaustion is also demonstrated similar to T cell exhaustion with an expression of inhibitory receptors PD-1, CD22, and LAIR-1 but the exhaustion profile of these cells is relatively unexplored (Moir and Fauci, 2014).
T662 38512-38640 Sentence denotes A large body of evidence suggests functional exhaustion of CD8+ T and CD4+ T cells in the peripheral blood of COVID-19 patients.
T663 38641-38838 Sentence denotes In some instances, exhaustion markers are concomitantly expressed along with activation and proliferation markers, as discussed above (Diao et al., 2020; Mathew et al., 2020; Mazzoni et al., 2020).
T664 38839-38986 Sentence denotes Moreover, increased expression of exhaustion-related genes like BATF, IRF4, and CD274 also correlated with disease severity (Hadjadj et al., 2020).
T665 38987-39104 Sentence denotes Interestingly, increased apoptosis of T cells became evident in severe cases as compared to mild/moderate conditions.
T666 39105-39249 Sentence denotes Thus, one way to explain lymphocytopenia in COVID-19 patients is that after the onset of symptoms, T cells are primed to overcome the infection.
T667 39250-39458 Sentence denotes However, in cases where viral infection persists, these cells attain robust activation, which may do more harm than good, as seen in severe and critically ill patients reviewed by Chen and John Wherry (2020).
T668 39459-39673 Sentence denotes Thus, the exhaustion of these cells precedes robust activation response, and eventually, they get eliminated from the circulation, as has been seen with previous viral infections (Wherry, 2011; Blank et al., 2019).
T669 39674-39852 Sentence denotes For example, during acute infection by lymphocytic choriomeningitis virus (LCMV), CD8+ T cells were shown to exhibit functional activation status and develop into memory T cells.
T670 39853-40035 Sentence denotes In contrast, during chronic infection, CD8+ T cells had impaired effector function and displayed profound exhaustion followed by apoptosis (Barber et al., 2006; Wherry et al., 2007).
T671 40036-40250 Sentence denotes Similarly, CD8+ T cell exhaustion is well known during persistent human immunodeficiency virus (HIV) infection, marked by robust expression of exhaustion markers like PD-1 (Day et al., 2006; Petrovas et al., 2006).
T672 40251-40424 Sentence denotes Following exhaustion, these cells are eliminated from the circulation, which is responsible for the decline in their number with long-term infection (Petrovas et al., 2009).
T673 40425-40714 Sentence denotes In addition to transcriptional changes that lead to exhaustion during chronic viral infection, the presence of secretory inhibitory molecules has been implicated in lymphocyte exhaustion with a prominent role of IL-10 and TGF-β in CD8+ T cell exhaustion (Wherry, 2011; Blank et al., 2019).
T674 40715-40870 Sentence denotes Increased levels of these cytokines in COVID-19 patients may also suggest their potential role in CD8+ T cell exhaustion (Chen, 2020; Liu A. et al., 2020).
T675 40871-41032 Sentence denotes Furthermore, severe COVID-19 patients had elevated lactic acid levels which is a known inhibitor of T cell function (Fischer et al., 2007; Tan L. et al., 2020b).
T676 41033-41125 Sentence denotes Another vital aspect of lymphocytopenia is direct cell death by the virus during infections.
T677 41126-41268 Sentence denotes HIV is a well-known example wherein CD4+ T cells undergo activation-induced cell death by the virus (Day et al., 2006; Petrovas et al., 2009).
T678 41269-41400 Sentence denotes Though respiratory viruses are not known to induce T cell apoptosis directly, virus-activated secondary factors may be responsible.
T679 41401-41556 Sentence denotes For example, T cell apoptosis was seen by the enhanced expression of death receptors during the infection of influenza virus (H5N1) (Boonnak et al., 2014).
T680 41557-41763 Sentence denotes MERS infection was also associated with T cell apoptosis by the virus-mediated activation of intrinsic and extrinsic pathways of cell death, resulting in their depletion from circulation (Chu et al., 2014).
T681 41764-41866 Sentence denotes The MERS infection was abortive in these cells, suggesting indirect activation of cell death pathways.
T682 41867-42030 Sentence denotes A few in vitro studies have shown low replication of SARS-CoV in T cells and the absence of any significant cell death (Chan and Chen, 2008; Wang X. et al., 2020).
T683 42031-42228 Sentence denotes Whether SARS-CoV-2 infects, T cells are currently unknown, but it appears that T cell decline during COVID-19 cannot be attributed to direct cell death by the virus but to the exhaustion mechanism.
T684 42229-42585 Sentence denotes In addition to the mechanism mentioned above associated with lymphocytopenia, secondary signaling mediated via engagement of death receptors, increased ROS, HMGB1 and other death-inducing agents released by the infected and damaged ATII cells may also be implicated in T cell decline (Kaminskyy and Zhivotovsky, 2010; Juno et al., 2017; Zhan et al., 2017).
T685 42586-42797 Sentence denotes Thus, based on these early findings, lymphocyte exhaustion may be driven by multiple factors that actively engage in rendering these cells ineffective, followed by their subsequent elimination (lymphocytopenia).
T686 42798-42930 Sentence denotes Overall, a clear picture is emerging, which strongly indicates lymphocytopenia as a predictive marker for COVID-19 disease severity.
T687 42931-43150 Sentence denotes Along with increased neutrophil number, the blood lymphocyte count serves as a better prognostic marker and reflects the immunopathological state of the patients (Giamarellos-Bourboulis et al., 2020; Liu et al., 2020b).
T688 43151-43280 Sentence denotes Further, based on these emerging studies, it is becoming evident that T cell response is heterogeneous during COVID-19 infection.
T689 43281-43501 Sentence denotes While peripheral blood may exhibit lymphocytopenia, and mostly exhausted status of these cells, the site of infection is associated with an activated profile of the cells and hence determines the severity of the disease.
T690 43502-43591 Sentence denotes Thus, caution should be exercised while designing therapeutic interventions for COVID-19.
T691 43592-43683 Sentence denotes The underlying immunological state should be borne in mind while considering the treatment.
T692 43684-43901 Sentence denotes Patients with lymphocytopenia and elevated functional and activation status of T cells may benefit from immunomodulatory approaches like mesenchymal stem cells, which are currently under clinical trials (NCT04377334).
T693 43902-44121 Sentence denotes Patients with imperfect T cell and B cell responses may benefit from convalescent plasma therapy, whereas patients with impaired interferon response may respond better to interferon therapies (NCT04350671; NCT04388709).
T694 44122-44288 Sentence denotes Thus, before a vaccine is available, a rational way to recommend therapy for severe cases of COVID-19 should be based on the patient’s underlying immunological state.
T695 44289-44400 Sentence denotes However, the treatment options become challenging when the patients exhibit cytokine storm and associated ARDS.
T696 44401-44604 Sentence denotes Moreover, it is imperative to analyze the T and B cell response by considering the age of the patient, comorbid condition, severity score, time of sample collection, and the method used for the analysis.
T697 44605-44815 Sentence denotes Because, the adaptive immune response is highly sensitive to these factors, and undermining them may thus further complicate our understanding of the development of the immunopathological state during COVID-19.