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PMC:7650537 / 6223-7010 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T45 13-18 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T46 112-117 Body_part denotes Blood http://purl.org/sig/ont/fma/fma9670
T47 341-346 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T48 369-374 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T49 454-457 Body_part denotes IgG http://purl.org/sig/ont/fma/fma62872

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 13-18 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T2 112-117 Body_part denotes Blood http://purl.obolibrary.org/obo/UBERON_0000178
T3 341-346 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T4 369-374 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T34 90-98 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 101-110 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T36 233-241 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T37 443-451 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T38 668-676 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T40 74-75 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 112-117 http://purl.obolibrary.org/obo/UBERON_0000178 denotes Blood
T42 112-117 http://www.ebi.ac.uk/efo/EFO_0000296 denotes Blood
T43 176-177 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 251-256 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T45 258-260 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T46 304-305 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 323-325 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T48 369-374 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T49 369-374 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T50 402-408 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T51 666-667 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T49 0-111 Sentence denotes Thirty-seven serum samples were obtained from 26 outpatient patients with a PCR-confirmed SARS-CoV-2 infection.
T50 112-340 Sentence denotes Blood was drawn between four and 60 days (median 19 days) after a positive real-time RT-PCR result in which parts of the SARS-CoV-2 E or N genes [18] were detected in oropharyngeal swabs with a cycle threshold ≤35 (median 26.8).
T51 341-409 Sentence denotes Serum was obtained from the blood and stored at −20 °C until tested.
T52 410-590 Sentence denotes These sera are likely to contain SARS-CoV-2 IgG/total antibodies and, therefore, were considered to determine the serological assay sensitivities (as previously suggested by [19]).
T53 591-787 Sentence denotes This variant of the sensitivity calculation only took into account whether a SARS-CoV-2-infected patient was reactive at all, regardless of when this reactivity was developed (reference method 1).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
129 244-245 Gene denotes E Gene:43740570
130 249-250 Gene denotes N Gene:43740575
131 49-59 Species denotes outpatient Tax:9606
132 60-68 Species denotes patients Tax:9606
133 233-243 Species denotes SARS-CoV-2 Tax:2697049
134 688-695 Species denotes patient Tax:9606
135 443-453 Species denotes SARS-CoV-2 Tax:2697049
136 90-110 Disease denotes SARS-CoV-2 infection MESH:C000657245
137 668-687 Disease denotes SARS-CoV-2-infected MESH:C000657245