PMC:7647877 / 61049-62411
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T687 | 24-32 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T688 | 74-84 | Body_part | denotes | intestinal | http://purl.org/sig/ont/fma/fma7199 |
| T689 | 142-145 | Body_part | denotes | gut | http://purl.org/sig/ont/fma/fma7199 |
| T690 | 173-178 | Body_part | denotes | lungs | http://purl.org/sig/ont/fma/fma68877 |
| T691 | 200-214 | Body_part | denotes | tight junction | http://purl.org/sig/ont/fma/fma67397 |
| T692 | 215-222 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T693 | 235-245 | Body_part | denotes | E-cadherin | http://purl.org/sig/ont/fma/fma61792 |
| T694 | 270-273 | Body_part | denotes | gut | http://purl.org/sig/ont/fma/fma7199 |
| T695 | 393-402 | Body_part | denotes | monocytes | http://purl.org/sig/ont/fma/fma62864 |
| T696 | 404-415 | Body_part | denotes | macrophages | http://purl.org/sig/ont/fma/fma63261 |
| T697 | 447-456 | Body_part | denotes | monocytes | http://purl.org/sig/ont/fma/fma62864 |
| T698 | 460-471 | Body_part | denotes | macrophages | http://purl.org/sig/ont/fma/fma63261 |
| T699 | 521-532 | Body_part | denotes | macrophages | http://purl.org/sig/ont/fma/fma63261 |
| T700 | 557-564 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T701 | 711-722 | Body_part | denotes | macrophages | http://purl.org/sig/ont/fma/fma63261 |
| T702 | 799-808 | Body_part | denotes | cytokines | http://purl.org/sig/ont/fma/fma84050 |
| T703 | 859-868 | Body_part | denotes | cytokines | http://purl.org/sig/ont/fma/fma84050 |
| T704 | 872-883 | Body_part | denotes | macrophages | http://purl.org/sig/ont/fma/fma63261 |
| T705 | 896-901 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T706 | 909-913 | Body_part | denotes | skin | http://purl.org/sig/ont/fma/fma7163 |
| T707 | 919-923 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T708 | 993-1001 | Body_part | denotes | Th1-cell | http://purl.org/sig/ont/fma/fma84382 |
| T709 | 997-1001 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T710 | 1081-1095 | Body_part | denotes | T helper cells | http://purl.org/sig/ont/fma/fma70572 |
| T711 | 1090-1095 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T712 | 1100-1117 | Body_part | denotes | cytotoxic T cells | http://purl.org/sig/ont/fma/fma70573 |
| T713 | 1112-1117 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T714 | 1271-1279 | Body_part | denotes | Antibody | http://purl.org/sig/ont/fma/fma62871 |
| T715 | 1296-1301 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T716 | 1355-1358 | Body_part | denotes | MHC | http://purl.org/sig/ont/fma/fma84079 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T142 | 909-913 | Body_part | denotes | skin | http://purl.obolibrary.org/obo/UBERON_0000014 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T273 | 187-196 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T761 | 74-84 | http://purl.obolibrary.org/obo/UBERON_0000160 | denotes | intestinal |
| T762 | 74-84 | http://www.ebi.ac.uk/efo/EFO_0000834 | denotes | intestinal |
| T763 | 99-100 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T764 | 142-145 | http://purl.obolibrary.org/obo/UBERON_0001007 | denotes | gut |
| T765 | 142-145 | http://purl.obolibrary.org/obo/UBERON_0001555 | denotes | gut |
| T766 | 142-145 | http://www.ebi.ac.uk/efo/EFO_0000834 | denotes | gut |
| T767 | 173-178 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lungs |
| T768 | 206-214 | http://purl.obolibrary.org/obo/UBERON_0007651 | denotes | junction |
| T769 | 237-245 | http://purl.obolibrary.org/obo/PR_000001327 | denotes | cadherin |
| T770 | 270-273 | http://purl.obolibrary.org/obo/UBERON_0001007 | denotes | gut |
| T771 | 270-273 | http://purl.obolibrary.org/obo/UBERON_0001555 | denotes | gut |
| T772 | 270-273 | http://www.ebi.ac.uk/efo/EFO_0000834 | denotes | gut |
| T773 | 291-301 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
| T774 | 330-340 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
| T775 | 393-402 | http://purl.obolibrary.org/obo/CL_0000576 | denotes | monocytes |
| T776 | 447-456 | http://purl.obolibrary.org/obo/CL_0000576 | denotes | monocytes |
| T777 | 499-509 | http://purl.obolibrary.org/obo/CL_0000234 | denotes | phagocytic |
| T778 | 647-655 | http://purl.obolibrary.org/obo/NCBITaxon_2 | denotes | bacteria |
| T779 | 894-901 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cells |
| T780 | 909-913 | http://purl.obolibrary.org/obo/UBERON_0000014 | denotes | skin |
| T781 | 909-913 | http://purl.obolibrary.org/obo/UBERON_0001003 | denotes | skin |
| T782 | 909-913 | http://purl.obolibrary.org/obo/UBERON_0002097 | denotes | skin |
| T783 | 909-913 | http://purl.obolibrary.org/obo/UBERON_0002199 | denotes | skin |
| T784 | 909-913 | http://www.ebi.ac.uk/efo/EFO_0000962 | denotes | skin |
| T785 | 917-923 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T-cell |
| T786 | 997-1001 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T787 | 1002-1010 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
| T788 | 1081-1095 | http://purl.obolibrary.org/obo/CL_0000912 | denotes | T helper cells |
| T789 | 1110-1117 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cells |
| T790 | 1139-1144 | http://purl.obolibrary.org/obo/CL_0000792 | denotes | Tregs |
| T791 | 1294-1301 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B cells |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T177 | 10-23 | Chemical | denotes | antimicrobial | http://purl.obolibrary.org/obo/CHEBI_33281 |
| T6608 | 24-32 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T179 | 53-61 | Chemical | denotes | defensin | http://purl.obolibrary.org/obo/CHEBI_82761 |
| T19032 | 215-222 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T38782 | 358-367 | Chemical | denotes | Vitamin D | http://purl.obolibrary.org/obo/CHEBI_89324 |
| T182 | 358-365 | Chemical | denotes | Vitamin | http://purl.obolibrary.org/obo/CHEBI_33229 |
| T183 | 473-483 | Chemical | denotes | calcitriol | http://purl.obolibrary.org/obo/CHEBI_17823 |
| T27998 | 543-556 | Chemical | denotes | antimicrobial | http://purl.obolibrary.org/obo/CHEBI_33281 |
| T49735 | 557-564 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T98487 | 594-602 | Chemical | denotes | defensin | http://purl.obolibrary.org/obo/CHEBI_82761 |
| T24741 | 734-744 | Chemical | denotes | superoxide | http://purl.obolibrary.org/obo/CHEBI_18421 |
| T48522 | 1059-1067 | Chemical | denotes | effector | http://purl.obolibrary.org/obo/CHEBI_35224 |
| T3518 | 1209-1216 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
| T26025 | 1359-1361 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T286 | 682-697 | http://purl.obolibrary.org/obo/GO_0045730 | denotes | oxidative burst |
| T287 | 745-754 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | synthesis |
| T288 | 917-937 | http://purl.obolibrary.org/obo/GO_0042098 | denotes | T-cell proliferation |
| T289 | 919-937 | http://purl.obolibrary.org/obo/GO_0008283 | denotes | cell proliferation |
| T290 | 1036-1051 | http://purl.obolibrary.org/obo/GO_0045087 | denotes | innate immunity |
| T291 | 1271-1290 | http://purl.obolibrary.org/obo/GO_0002377 | denotes | Antibody production |
| T292 | 1304-1322 | http://purl.obolibrary.org/obo/GO_0019882 | denotes | Antigen processing |
| T293 | 1341-1351 | http://purl.obolibrary.org/obo/GO_0065007 | denotes | regulation |
| T294 | 1355-1358 | http://purl.obolibrary.org/obo/GO_0046776 | denotes | MHC |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T377 | 358-532 | Sentence | denotes | Vitamin D receptor found in, e.g., monocytes, macrophages, and DCs; ↑ differentiation of monocytes to macrophages; calcitriol ↑ movement and phagocytic ability of macrophages |
| T378 | 533-675 | Sentence | denotes | Regulates antimicrobial protein expression (cathelicidin and defensin), which directly kill pathogens, especially bacteria; ↓ IFN-γ production |
| T379 | 676-883 | Sentence | denotes | ↑ The oxidative burst potential of macrophages; increases superoxide synthesis; reduces the expression of pro-inflammatory cytokines and increases the expression of anti-inflammatory cytokines by macrophages |
| T380 | 884-1268 | Sentence | denotes | Homing of T cells to the skin; ↓ T-cell proliferation; inhibitory effects mainly in adaptive immunity (e.g., Th1-cell activity); stimulatory effects in innate immunity; ↓ the effector functions of T helper cells and cytotoxic T cells; ↑ the production of Tregs; inhibitory effect on the differentiation and maturation of the antigen-presenting DCs, and helps program DCs for tolerance |
| T381 | 1269-1301 | Sentence | denotes | ↓ Antibody production by B cells |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1446 | 235-245 | Gene | denotes | E-cadherin | Gene:999 |
| 1447 | 659-664 | Gene | denotes | IFN-γ | Gene:3458 |
| 1472 | 187-196 | Disease | denotes | infection | MESH:D007239 |
| 1473 | 322-329 | Disease | denotes | corneal | MESH:D003316 |