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PMC:7646269 / 5463-7045 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T3 1101-1114 https://glytoucan.org/Structures/Glycans/G93424OB denotes galactomannan

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T5 174-189 Body_part denotes Coronary artery http://purl.org/sig/ont/fma/fma49893
T6 673-678 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T7 819-835 Body_part denotes White blood cell http://purl.org/sig/ont/fma/fma62852
T8 831-835 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T9 875-883 Body_part denotes Platelet http://purl.org/sig/ont/fma/fma62851
T10 1050-1055 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T11 1095-1100 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T5 174-189 Body_part denotes Coronary artery http://purl.obolibrary.org/obo/UBERON_0001621
T6 183-189 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T7 673-678 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T8 825-830 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T9 1050-1055 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T10 1095-1100 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T37 118-130 Disease denotes Hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T38 148-156 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T39 174-197 Disease denotes Coronary artery disease http://purl.obolibrary.org/obo/MONDO_0005010
T40 183-197 Disease denotes artery disease http://purl.obolibrary.org/obo/MONDO_0000473
T41 215-252 Disease denotes Chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T42 235-252 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T43 281-305 Disease denotes cerebrovascular accident http://purl.obolibrary.org/obo/MONDO_0005098|http://purl.obolibrary.org/obo/MONDO_0011057|http://purl.obolibrary.org/obo/MONDO_0020671
T46 334-340 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T47 359-367 Disease denotes Dementia http://purl.obolibrary.org/obo/MONDO_0001627
T48 761-770 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T25 75-79 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T26 75-79 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T27 81-85 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T28 81-85 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T29 87-91 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T30 87-91 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T31 93-97 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T32 93-97 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T33 183-189 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T34 183-189 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T35 673-678 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T36 825-830 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T37 831-835 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T31 965-976 Chemical denotes Lactic acid http://purl.obolibrary.org/obo/CHEBI_28358|http://purl.obolibrary.org/obo/CHEBI_78320
T33 972-976 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T34 1012-1021 Chemical denotes bilirubin http://purl.obolibrary.org/obo/CHEBI_16990
T35 1056-1066 Chemical denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T36 1101-1114 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T37 1116-1118 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T38 1242-1252 Chemical denotes prednisone http://purl.obolibrary.org/obo/CHEBI_8382
T39 1417-1425 Chemical denotes Cefepime http://purl.obolibrary.org/obo/CHEBI_478164
T40 1428-1438 Chemical denotes Vancomycin http://purl.obolibrary.org/obo/CHEBI_28001
T41 1440-1448 Chemical denotes Cefepime http://purl.obolibrary.org/obo/CHEBI_478164
T42 1451-1461 Chemical denotes Vancomycin http://purl.obolibrary.org/obo/CHEBI_28001
T43 1463-1472 Chemical denotes Meropenem http://purl.obolibrary.org/obo/CHEBI_43968
T44 1475-1485 Chemical denotes Vancomycin http://purl.obolibrary.org/obo/CHEBI_28001
T45 1487-1495 Chemical denotes Cefepime http://purl.obolibrary.org/obo/CHEBI_478164
T46 1498-1508 Chemical denotes Vancomycin http://purl.obolibrary.org/obo/CHEBI_28001
T47 1571-1582 Chemical denotes Caspofungin http://purl.obolibrary.org/obo/CHEBI_474180

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T3 1101-1114 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T29 118-130 Phenotype denotes Hypertension http://purl.obolibrary.org/obo/HP_0000822
T30 215-252 Phenotype denotes Chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T31 281-305 Phenotype denotes cerebrovascular accident http://purl.obolibrary.org/obo/HP_0001297
T32 334-340 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T33 359-367 Phenotype denotes Dementia http://purl.obolibrary.org/obo/HP_0000726
T34 552-557 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T35 761-770 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T57 0-42 Sentence denotes Patient 1 Patient 2 Patient 3 Patient 4
T58 43-66 Sentence denotes Age (y) 82 79 77 77
T59 67-97 Sentence denotes Gender Male Male Male Male
T60 98-117 Sentence denotes Comorbid conditions
T61 118-147 Sentence denotes Hypertension No Yes No No
T62 148-173 Sentence denotes Diabetes No No No Yes
T63 174-214 Sentence denotes Coronary artery disease No Yes No No
T64 215-269 Sentence denotes Chronic obstructive pulmonary disease Yes No No No
T65 270-322 Sentence denotes History of cerebrovascular accident No Yes No No
T66 323-358 Sentence denotes History of cancer Yes Yes No No
T67 359-383 Sentence denotes Dementia No No No No
T68 384-508 Sentence denotes Timing of positive culture for Aspergillus fumigatus (hospital day) Day 15 and 20 Day 7, 10, and 16 Day 10 and 14 Day 10
T69 509-551 Sentence denotes Clinical features at Aspergillus isolation
T70 552-574 Sentence denotes Fever No No Yes No
T71 575-638 Sentence denotes Respiratory status at Aspergillus isolation IMV IMV IMV IMV
T72 639-818 Sentence denotes New radiographic abnormalities on chest CT or X‐ray Worsening infiltrates Opacities with dense consolidations Cavitary pneumonia Diffuse interstitial and patchy hazy opacities
T73 819-874 Sentence denotes White blood cell count (103/μL) 32.9 21.1 20.1 20.2
T74 875-918 Sentence denotes Platelet count (103/μL) 376 146 420 123
T75 919-964 Sentence denotes Procalcitonin (ng/mL) 0.16 0.30 3.30 9.34
T76 965-1005 Sentence denotes Lactic acid (mmol/L) 1.0 3.6 1.6 3.7
T77 1006-1049 Sentence denotes Total bilirubin (mg/dL) 2.4 1.1 1.4 2.9
T78 1050-1094 Sentence denotes Serum creatinine (mg/dL) 2.6 3.1 1.5 4.1
T79 1095-1144 Sentence denotes Serum galactomannan NA 0.71 Negative Negative
T80 1145-1184 Sentence denotes Vasopressor support Yes Yes Yes Yes
T81 1185-1206 Sentence denotes Inpatient medications
T82 1207-1222 Sentence denotes Glucocorticoids
T83 1223-1288 Sentence denotes Cumulative dose in prednisone equivalent (mg) 932 1000 870 87
T84 1289-1346 Sentence denotes Starting date (hospital day) Day 8 Day 2 Day 2 Day 10
T85 1347-1374 Sentence denotes Duration (d) 10 10 12 3
T86 1375-1403 Sentence denotes Tocilizumab No Yes No No
T87 1404-1508 Sentence denotes Antibiotics Cefepime + Vancomycin Cefepime + Vancomycin Meropenem + Vancomycin Cefepime + Vancomycin
T88 1509-1582 Sentence denotes Antifungal therapy Voriconazole Voriconazole Voriconazole Caspofungin

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
215 415-436 Species denotes Aspergillus fumigatus Tax:746128
216 530-541 Species denotes Aspergillus Tax:746128
217 597-608 Species denotes Aspergillus Tax:746128
218 1056-1066 Chemical denotes creatinine MESH:D003404
219 1242-1252 Chemical denotes prednisone MESH:D011241
220 1375-1386 Chemical denotes Tocilizumab MESH:C502936
221 1417-1425 Chemical denotes Cefepime MESH:D000077723
222 1428-1438 Chemical denotes Vancomycin MESH:D014640
223 1440-1448 Chemical denotes Cefepime MESH:D000077723
224 1451-1461 Chemical denotes Vancomycin MESH:D014640
225 1463-1472 Chemical denotes Meropenem MESH:D000077731
226 1475-1485 Chemical denotes Vancomycin MESH:D014640
227 1487-1495 Chemical denotes Cefepime MESH:D000077723
228 1498-1508 Chemical denotes Vancomycin MESH:D014640
229 1529-1541 Chemical denotes Voriconazole MESH:D065819
230 1543-1555 Chemical denotes Voriconazole MESH:D065819
231 1557-1569 Chemical denotes Voriconazole MESH:D065819
232 118-130 Disease denotes Hypertension MESH:D006973
233 148-156 Disease denotes Diabetes MESH:D003920
234 174-197 Disease denotes Coronary artery disease MESH:D003324
235 215-252 Disease denotes Chronic obstructive pulmonary disease MESH:D029424
236 281-305 Disease denotes cerebrovascular accident MESH:D020521
237 334-340 Disease denotes cancer MESH:D009369
238 552-557 Disease denotes Fever MESH:D005334
239 761-770 Disease denotes pneumonia MESH:D011014