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PMC:7646269 / 1366-17434 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T2 3835-3848 https://glytoucan.org/Structures/Glycans/G93424OB denotes galactomannan
T3 5198-5211 https://glytoucan.org/Structures/Glycans/G93424OB denotes galactomannan
T4 13445-13458 https://glytoucan.org/Structures/Glycans/G93424OB denotes galactomannan
T5 13518-13531 https://glytoucan.org/Structures/Glycans/G93424OB denotes galactomannan
T6 13745-13758 https://glytoucan.org/Structures/Glycans/G93424OB denotes galactomannan
T7 13815-13828 https://glytoucan.org/Structures/Glycans/G93424OB denotes galactomannan
T8 14015-14028 https://glytoucan.org/Structures/Glycans/G93424OB denotes galactomannan
T9 15294-15307 https://glytoucan.org/Structures/Glycans/G93424OB denotes galactomannan

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 1167-1172 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T3 2562-2566 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T4 3829-3834 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T5 4271-4286 Body_part denotes Coronary artery http://purl.org/sig/ont/fma/fma49893
T6 4770-4775 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T7 4916-4932 Body_part denotes White blood cell http://purl.org/sig/ont/fma/fma62852
T8 4928-4932 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T9 4972-4980 Body_part denotes Platelet http://purl.org/sig/ont/fma/fma62851
T10 5147-5152 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T11 5192-5197 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T12 6944-6949 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T13 7519-7534 Body_part denotes coronary artery http://purl.org/sig/ont/fma/fma49893
T14 7576-7586 Body_part denotes renal cell http://purl.org/sig/ont/fma/fma86785
T15 7582-7586 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T16 7943-7948 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T17 8215-8220 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T18 8921-8926 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T19 9001-9005 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T20 9127-9142 Body_part denotes right lung base http://purl.org/sig/ont/fma/fma86152
T21 9289-9294 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T22 9505-9520 Body_part denotes left lower lobe http://purl.org/sig/ont/fma/fma7371
T23 10429-10434 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T24 13439-13444 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T25 13512-13517 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T26 13739-13744 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T27 13809-13814 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T28 14009-14014 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T29 14208-14212 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T30 15135-15140 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T31 15288-15293 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 1167-1172 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T3 2562-2566 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T4 3829-3834 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T5 4271-4286 Body_part denotes Coronary artery http://purl.obolibrary.org/obo/UBERON_0001621
T6 4280-4286 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T7 4770-4775 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T8 4922-4927 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T9 5147-5152 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T10 5192-5197 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T11 6944-6949 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T12 7519-7534 Body_part denotes coronary artery http://purl.obolibrary.org/obo/UBERON_0001621
T13 7528-7534 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T14 7943-7948 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T15 7981-7985 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T16 8215-8220 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T17 8921-8926 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T18 9001-9005 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T19 9064-9068 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T20 9127-9137 Body_part denotes right lung http://purl.obolibrary.org/obo/UBERON_0002167
T21 9133-9137 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T22 9289-9294 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T23 9516-9520 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T24 10429-10434 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T25 13439-13444 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T26 13512-13517 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T27 13739-13744 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T28 13809-13814 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T29 14009-14014 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T30 14208-14212 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T31 15288-15293 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T12 35-48 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T13 134-158 Disease denotes coronavirus disease‐2019 http://purl.obolibrary.org/obo/MONDO_0100096
T14 160-168 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T15 198-217 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T16 331-339 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T17 446-454 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T18 524-537 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T19 555-563 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T20 660-668 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T21 702-715 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T22 819-827 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T23 1435-1448 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T24 1826-1845 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T25 2041-2049 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T26 2305-2311 Disease denotes Cancer http://purl.obolibrary.org/obo/MONDO_0004992
T27 2388-2395 Disease denotes Allergy http://purl.obolibrary.org/obo/MONDO_0005271
T28 2400-2410 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550
T29 2420-2427 Disease denotes Mycoses http://purl.obolibrary.org/obo/MONDO_0002041
T30 2476-2487 Disease denotes neutropenia http://purl.obolibrary.org/obo/MONDO_0001475
T31 2562-2574 Disease denotes lung disease http://purl.obolibrary.org/obo/MONDO_0005275
T32 2576-2613 Disease denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T33 2596-2613 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T34 3073-3082 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T35 4023-4031 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T36 4083-4096 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T37 4215-4227 Disease denotes Hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T38 4245-4253 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T39 4271-4294 Disease denotes Coronary artery disease http://purl.obolibrary.org/obo/MONDO_0005010
T40 4280-4294 Disease denotes artery disease http://purl.obolibrary.org/obo/MONDO_0000473
T41 4312-4349 Disease denotes Chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T42 4332-4349 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T43 4378-4402 Disease denotes cerebrovascular accident http://purl.obolibrary.org/obo/MONDO_0005098|http://purl.obolibrary.org/obo/MONDO_0011057|http://purl.obolibrary.org/obo/MONDO_0020671
T46 4431-4437 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T47 4456-4464 Disease denotes Dementia http://purl.obolibrary.org/obo/MONDO_0001627
T48 4858-4867 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T49 5857-5865 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T50 6667-6671 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T51 6676-6693 Disease denotes pharyngeal cancer http://purl.obolibrary.org/obo/MONDO_0005517
T52 6687-6693 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T53 6747-6782 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T54 6753-6782 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T55 6784-6788 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T56 7388-7390 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T57 7505-7517 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T58 7519-7542 Disease denotes coronary artery disease http://purl.obolibrary.org/obo/MONDO_0005010
T59 7528-7542 Disease denotes artery disease http://purl.obolibrary.org/obo/MONDO_0000473
T60 7576-7596 Disease denotes renal cell carcinoma http://purl.obolibrary.org/obo/MONDO_0005086|http://purl.obolibrary.org/obo/MONDO_0005549
T62 7587-7596 Disease denotes carcinoma http://purl.obolibrary.org/obo/MONDO_0004993
T63 7676-7695 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T64 8371-8373 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T65 8659-8678 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T66 9413-9422 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T67 9592-9608 Disease denotes thrombophlebitis http://purl.obolibrary.org/obo/MONDO_0002800
T68 9641-9651 Disease denotes bacteremia http://purl.obolibrary.org/obo/MONDO_0005229
T69 9750-9764 Disease denotes encephalopathy http://purl.obolibrary.org/obo/MONDO_0005560
T70 9766-9793 Disease denotes chronic respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T71 9855-9879 Disease denotes Staphylococcus pneumonia http://purl.obolibrary.org/obo/MONDO_0005970
T72 9870-9879 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T73 9950-9952 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T74 10048-10072 Disease denotes type 2 diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005148
T75 10055-10063 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T76 10152-10171 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T77 10690-10703 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T78 10724-10732 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T79 10885-10889 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T80 10897-10906 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T81 10975-10983 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T82 11053-11061 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T83 11083-11096 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T84 11098-11102 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T85 11188-11196 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T86 11318-11326 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T87 11460-11469 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T88 11477-11481 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T89 11573-11581 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T90 11610-11623 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T91 11791-11799 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T92 11851-11867 Disease denotes fungal infection http://purl.obolibrary.org/obo/MONDO_0002041
T93 11858-11867 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T94 11972-11988 Disease denotes fungal infection http://purl.obolibrary.org/obo/MONDO_0002041
T95 11979-11988 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T96 12336-12357 Disease denotes respiratory infection http://purl.obolibrary.org/obo/MONDO_0024355
T97 12348-12357 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T98 12396-12405 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T99 12534-12542 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T100 12725-12733 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T101 13357-13365 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T102 13553-13575 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T103 13562-13575 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T104 13684-13688 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T105 13882-13891 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T106 13932-13941 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T107 13966-13970 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T108 14033-14037 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T109 14189-14193 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T110 14329-14337 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T111 14495-14499 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T112 14613-14621 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T113 14771-14779 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T114 14793-14810 Disease denotes fungal infections http://purl.obolibrary.org/obo/MONDO_0002041
T115 14862-14872 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T116 14969-14973 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T117 15009-15017 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T118 15384-15392 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T9 55-58 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T10 403-404 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 565-571 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3 , 4
T12 587-590 http://purl.obolibrary.org/obo/PR_000001343 denotes aim
T13 719-720 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 783-784 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 915-917 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T16 1167-1172 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T17 1329-1330 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 2010-2011 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T19 2262-2274 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T20 2547-2548 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 2562-2566 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T22 2562-2566 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T23 3655-3656 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 3682-3686 http://purl.obolibrary.org/obo/CLO_0053001 denotes 1‐14
T25 4172-4176 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T26 4172-4176 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T27 4178-4182 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T28 4178-4182 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T29 4184-4188 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T30 4184-4188 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T31 4190-4194 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T32 4190-4194 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T33 4280-4286 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T34 4280-4286 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T35 4770-4775 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T36 4922-4927 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T37 4928-4932 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T38 6193-6194 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 6450-6454 http://purl.obolibrary.org/obo/CLO_0001006 denotes 3‐11
T40 6466-6467 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 6654-6655 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 6942-6943 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T43 6944-6949 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T44 7469-7470 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 7492-7493 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 7528-7534 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T47 7528-7534 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T48 7582-7586 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T49 7941-7942 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T50 7943-7948 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T51 8206-8207 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T52 8215-8220 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T53 8564-8565 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T54 8714-8715 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T55 8919-8920 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T56 8921-8926 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T57 9001-9005 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T58 9001-9005 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T59 9127-9137 http://purl.obolibrary.org/obo/UBERON_0002167 denotes right lung
T60 9280-9281 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T61 9289-9294 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T62 9461-9462 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T63 9695-9696 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T64 9888-9889 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 10012-10013 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T66 10035-10036 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T67 10429-10434 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T68 11444-11449 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T69 11878-11881 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T70 11902-11903 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T71 11941-11942 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T72 12902-12904 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T73 13599-13602 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T74 13945-13946 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T75 14311-14312 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T76 14939-14940 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T77 14979-14980 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T78 15135-15140 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T79 15239-15240 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T80 15286-15287 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T8 50-53 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T10 370-385 Chemical denotes glucocorticoids http://purl.obolibrary.org/obo/CHEBI_24261
T11 425-428 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T13 1070-1076 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T14 1296-1306 Chemical denotes prednisone http://purl.obolibrary.org/obo/CHEBI_8382
T15 1468-1471 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T17 1618-1628 Chemical denotes antibiotic http://purl.obolibrary.org/obo/CHEBI_33281
T18 1668-1679 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281
T19 2223-2226 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T21 2447-2450 Chemical denotes MSG http://purl.obolibrary.org/obo/CHEBI_64220|http://purl.obolibrary.org/obo/CHEBI_64243
T23 2509-2524 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T24 2787-2797 Chemical denotes antibiotic http://purl.obolibrary.org/obo/CHEBI_33281
T25 2845-2859 Chemical denotes glucocorticoid http://purl.obolibrary.org/obo/CHEBI_24261
T26 2875-2885 Chemical denotes prednisone http://purl.obolibrary.org/obo/CHEBI_8382
T27 3415-3418 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T29 3835-3848 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T30 3951-3961 Chemical denotes antibiotic http://purl.obolibrary.org/obo/CHEBI_33281
T31 5062-5073 Chemical denotes Lactic acid http://purl.obolibrary.org/obo/CHEBI_28358|http://purl.obolibrary.org/obo/CHEBI_78320
T33 5069-5073 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T34 5109-5118 Chemical denotes bilirubin http://purl.obolibrary.org/obo/CHEBI_16990
T35 5153-5163 Chemical denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T36 5198-5211 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T37 5213-5215 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T38 5339-5349 Chemical denotes prednisone http://purl.obolibrary.org/obo/CHEBI_8382
T39 5514-5522 Chemical denotes Cefepime http://purl.obolibrary.org/obo/CHEBI_478164
T40 5525-5535 Chemical denotes Vancomycin http://purl.obolibrary.org/obo/CHEBI_28001
T41 5537-5545 Chemical denotes Cefepime http://purl.obolibrary.org/obo/CHEBI_478164
T42 5548-5558 Chemical denotes Vancomycin http://purl.obolibrary.org/obo/CHEBI_28001
T43 5560-5569 Chemical denotes Meropenem http://purl.obolibrary.org/obo/CHEBI_43968
T44 5572-5582 Chemical denotes Vancomycin http://purl.obolibrary.org/obo/CHEBI_28001
T45 5584-5592 Chemical denotes Cefepime http://purl.obolibrary.org/obo/CHEBI_478164
T46 5595-5605 Chemical denotes Vancomycin http://purl.obolibrary.org/obo/CHEBI_28001
T47 5668-5679 Chemical denotes Caspofungin http://purl.obolibrary.org/obo/CHEBI_474180
T48 5733-5735 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T49 6124-6139 Chemical denotes glucocorticoids http://purl.obolibrary.org/obo/CHEBI_24261
T50 6180-6188 Chemical denotes steroids http://purl.obolibrary.org/obo/CHEBI_35341
T51 6310-6324 Chemical denotes glucocorticoid http://purl.obolibrary.org/obo/CHEBI_24261
T52 6405-6419 Chemical denotes glucocorticoid http://purl.obolibrary.org/obo/CHEBI_24261
T53 6484-6494 Chemical denotes prednisone http://purl.obolibrary.org/obo/CHEBI_8382
T54 6563-6574 Chemical denotes tocilizumab http://purl.obolibrary.org/obo/CHEBI_64360
T55 7031-7039 Chemical denotes cefepime http://purl.obolibrary.org/obo/CHEBI_478164
T56 7044-7054 Chemical denotes vancomycin http://purl.obolibrary.org/obo/CHEBI_28001|http://purl.obolibrary.org/obo/CHEBI_76842
T58 7177-7188 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281
T59 7193-7205 Chemical denotes voriconazole http://purl.obolibrary.org/obo/CHEBI_10023
T60 7435-7445 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T61 8108-8116 Chemical denotes cefepime http://purl.obolibrary.org/obo/CHEBI_478164
T62 8121-8131 Chemical denotes vancomycin http://purl.obolibrary.org/obo/CHEBI_28001|http://purl.obolibrary.org/obo/CHEBI_76842
T64 8330-8339 Chemical denotes meropenem http://purl.obolibrary.org/obo/CHEBI_43968
T65 8341-8351 Chemical denotes vancomycin http://purl.obolibrary.org/obo/CHEBI_28001|http://purl.obolibrary.org/obo/CHEBI_76842
T67 8357-8369 Chemical denotes voriconazole http://purl.obolibrary.org/obo/CHEBI_10023
T68 8530-8540 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T69 8837-8846 Chemical denotes meropenem http://purl.obolibrary.org/obo/CHEBI_43968
T70 8851-8861 Chemical denotes vancomycin http://purl.obolibrary.org/obo/CHEBI_28001|http://purl.obolibrary.org/obo/CHEBI_76842
T72 8895-8907 Chemical denotes voriconazole http://purl.obolibrary.org/obo/CHEBI_10023
T73 9138-9142 Chemical denotes base http://purl.obolibrary.org/obo/CHEBI_22695
T74 9214-9226 Chemical denotes voriconazole http://purl.obolibrary.org/obo/CHEBI_10023
T75 9315-9327 Chemical denotes voriconazole http://purl.obolibrary.org/obo/CHEBI_10023
T76 9676-9686 Chemical denotes vancomycin http://purl.obolibrary.org/obo/CHEBI_28001|http://purl.obolibrary.org/obo/CHEBI_76842
T78 9978-9988 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T79 10210-10218 Chemical denotes cefepime http://purl.obolibrary.org/obo/CHEBI_478164
T80 10223-10233 Chemical denotes vancomycin http://purl.obolibrary.org/obo/CHEBI_28001|http://purl.obolibrary.org/obo/CHEBI_76842
T82 10486-10497 Chemical denotes Caspofungin http://purl.obolibrary.org/obo/CHEBI_474180
T83 10524-10533 Chemical denotes meropenem http://purl.obolibrary.org/obo/CHEBI_43968
T84 10538-10548 Chemical denotes vancomycin http://purl.obolibrary.org/obo/CHEBI_28001|http://purl.obolibrary.org/obo/CHEBI_76842
T86 10634-10644 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T87 11221-11224 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T89 11245-11248 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T91 11529-11532 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T93 12122-12125 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T95 12798-12801 Chemical denotes MSG http://purl.obolibrary.org/obo/CHEBI_64220|http://purl.obolibrary.org/obo/CHEBI_64243
T97 13046-13049 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T99 13163-13166 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T101 13272-13275 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T103 13445-13458 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T104 13518-13531 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T105 13581-13585 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T106 13588-13594 Chemical denotes glucan http://purl.obolibrary.org/obo/CHEBI_37163
T107 13745-13758 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T108 13815-13828 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T109 14015-14028 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T110 14091-14094 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T112 14283-14286 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T114 14295-14298 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T116 14370-14373 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T118 14510-14523 Chemical denotes dexamethasone http://purl.obolibrary.org/obo/CHEBI_41879
T119 14683-14698 Chemical denotes glucocorticoids http://purl.obolibrary.org/obo/CHEBI_24261
T120 15294-15307 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T121 15551-15557 Chemical denotes formal http://purl.obolibrary.org/obo/CHEBI_48341

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T2 3835-3848 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T3 5198-5211 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T4 13445-13458 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T5 13518-13531 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T6 13745-13758 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T7 13815-13828 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T8 14015-14028 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T9 15294-15307 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T5 16-48 Phenotype denotes Invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T6 50-53 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T7 198-217 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T8 425-428 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T9 1308-1313 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T10 1468-1471 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T11 1553-1558 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T12 1574-1579 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T13 1653-1658 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T14 1826-1845 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T15 2223-2226 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T16 2305-2311 Phenotype denotes Cancer http://purl.obolibrary.org/obo/HP_0002664
T17 2313-2339 Phenotype denotes Invasive Fungal Infections http://purl.obolibrary.org/obo/HP_0020101
T18 2388-2395 Phenotype denotes Allergy http://purl.obolibrary.org/obo/HP_0012393
T19 2476-2487 Phenotype denotes neutropenia http://purl.obolibrary.org/obo/HP_0001875
T20 2562-2574 Phenotype denotes lung disease http://purl.obolibrary.org/obo/HP_0002088
T21 2576-2613 Phenotype denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T22 2669-2674 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T23 2741-2766 Phenotype denotes respiratory insufficiency http://purl.obolibrary.org/obo/HP_0002093
T24 3073-3082 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T25 3415-3418 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T26 3749-3754 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T27 3759-3771 Phenotype denotes leukocytosis http://purl.obolibrary.org/obo/HP_0001974
T28 4064-4096 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T29 4215-4227 Phenotype denotes Hypertension http://purl.obolibrary.org/obo/HP_0000822
T30 4312-4349 Phenotype denotes Chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T31 4378-4402 Phenotype denotes cerebrovascular accident http://purl.obolibrary.org/obo/HP_0001297
T32 4431-4437 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T33 4456-4464 Phenotype denotes Dementia http://purl.obolibrary.org/obo/HP_0000726
T34 4649-4654 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T35 4858-4867 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T36 6667-6671 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T37 6687-6693 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T38 6753-6773 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T39 6801-6806 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273
T40 7136-7148 Phenotype denotes Leukocytosis http://purl.obolibrary.org/obo/HP_0001974
T41 7220-7238 Phenotype denotes intermittent fever http://purl.obolibrary.org/obo/HP_0001954
T42 7505-7517 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T43 7544-7570 Phenotype denotes transient ischaemic attack http://purl.obolibrary.org/obo/HP_0002326
T44 7576-7596 Phenotype denotes renal cell carcinoma http://purl.obolibrary.org/obo/HP_0005584
T45 7676-7695 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T46 8037-8054 Phenotype denotes pneumomediastinum http://purl.obolibrary.org/obo/HP_0025421
T47 8415-8427 Phenotype denotes leukocytosis http://purl.obolibrary.org/obo/HP_0001974
T48 8659-8678 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T49 8716-8721 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T50 8863-8868 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T51 9233-9238 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T52 9243-9255 Phenotype denotes leukocytosis http://purl.obolibrary.org/obo/HP_0001974
T53 9413-9422 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T54 9592-9608 Phenotype denotes thrombophlebitis http://purl.obolibrary.org/obo/HP_0004418
T55 9641-9651 Phenotype denotes bacteremia http://purl.obolibrary.org/obo/HP_0031864
T56 9750-9764 Phenotype denotes encephalopathy http://purl.obolibrary.org/obo/HP_0001298
T57 9774-9793 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T58 9870-9879 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T59 10055-10072 Phenotype denotes diabetes mellitus http://purl.obolibrary.org/obo/HP_0000819
T60 10152-10171 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T61 11221-11224 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T62 11245-11248 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T63 11460-11469 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T64 11529-11532 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T65 11963-11988 Phenotype denotes invasive fungal infection http://purl.obolibrary.org/obo/HP_0020101
T66 12039-12045 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T67 12122-12125 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T68 12336-12357 Phenotype denotes respiratory infection http://purl.obolibrary.org/obo/HP_0011947
T69 13046-13049 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T70 13163-13166 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T71 13272-13275 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T72 13922-13941 Phenotype denotes pulmonary infection http://purl.obolibrary.org/obo/HP_0006532
T73 14091-14094 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T74 14283-14286 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T75 14295-14298 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T76 14370-14373 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T77 15114-15140 Phenotype denotes abnormalities of the lungs http://purl.obolibrary.org/obo/HP_0002088

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T22 0-15 Sentence denotes 1 INTRODUCTION
T23 16-111 Sentence denotes Invasive pulmonary aspergillosis (IPA) has been reported in critically ill patients in the ICU.
T24 112-300 Sentence denotes 1 , 2 Patients with coronavirus disease‐2019 (COVID‐19) may develop acute hypoxemic respiratory failure and are at high risk of requiring mechanical ventilation with prolonged ICU stays.
T25 301-386 Sentence denotes Further, patients with severe COVID‐19 may be administered high‐dose glucocorticoids.
T26 387-490 Sentence denotes Hence, there is a theoretical risk of IPA in patients with COVID‐19 due to combined known risk factors.
T27 491-564 Sentence denotes However, there are scant data on aspergillosis in patients with COVID‐19.
T28 565-744 Sentence denotes 3 , 4 , 5 , 6 The aim of the study was to describe the clinical features of critically ill COVID‐19‐infected patients with pulmonary aspergillosis at a New York City hospital.
T29 746-769 Sentence denotes 2 PATIENTS AND METHODS
T30 770-997 Sentence denotes We performed a retrospective chart review of all COVID‐19‐infected patients with Aspergillus isolates in respiratory samples during 21 March and 22 April 2020 at Mount Sinai Beth Israel, an acute care hospital in New York City.
T31 998-1159 Sentence denotes We collected longitudinal clinical data, including fraction of inspired oxygen (FiO2) and vital signs, laboratory and microbiology data, treatment, and outcomes.
T32 1160-1234 Sentence denotes Serial chest radiographs and computed tomography (CT) scans were reviewed.
T33 1235-1307 Sentence denotes Glucocorticoid dose was converted into an equivalent dose of prednisone.
T34 1308-1364 Sentence denotes Fever was defined as a temperature of ≥100.4 Fahrenheit.
T35 1365-1507 Sentence denotes We used the clinical algorithm for ICU patients to classify pulmonary aspergillosis as either putative IPA or colonisation (AspICU algorithm).
T36 1508-1709 Sentence denotes 7 As per the clinical algorithm, persistent fever was defined as fever persisting despite at least 3 days of antibiotic therapy or recrudescent fever while on antibiotics without other apparent cause.
T37 1710-1885 Sentence denotes Worsening respiratory status was defined by an increase in FiO2 requirement on mechanical ventilation, or worsening respiratory failure led to invasive mechanical ventilation.
T38 1886-1997 Sentence denotes Study approval was obtained from the institutional review board of the Icahn School of Medicine at Mount Sinai.
T39 1999-2009 Sentence denotes 3 RESULTS
T40 2010-2142 Sentence denotes A total of seven patients with COVID‐19 who had one or more positive respiratory cultures for Aspergillus fumigatus were identified.
T41 2143-2227 Sentence denotes According to the AspICU algorithm, 7 four patients were classified as putative IPA.
T42 2228-2525 Sentence denotes None of the patients had European Organization for Research and Treatment of Cancer/ Invasive Fungal Infections Cooperative Group and the National Institute of Allergy and Infectious Diseases Mycoses Study Group (EORTC/MSG) host factors, including neutropenia and prolonged use of corticosteroids.
T43 2526-2628 Sentence denotes Only one patient had a pre‐existing lung disease (chronic obstructive pulmonary disease in Patient 1).
T44 2629-2943 Sentence denotes All four patients had compatible signs (fever refractory to at least 3 days of appropriate therapy or worsening respiratory insufficiency despite appropriate antibiotic therapy and ventilatory support), host factor (glucocorticoid treatment with prednisone equivalent > 20 mg/d) and abnormal radiographic findings.
T45 2944-3158 Sentence denotes Radiographic abnormalities included worsening infiltrates (Patient 1), opacities with dense consolidations (Patient 2), cavitary pneumonia (Patient 3) and diffuse interstitial and patchy hazy opacities (Patient 4).
T46 3159-3268 Sentence denotes The remaining three patients were classified as having colonisation as they lacked compatible clinical signs.
T47 3269-3359 Sentence denotes For those three patients, subsequent clinical deterioration was explained by other causes.
T48 3360-3440 Sentence denotes Clinical characteristics of the patients with putative IPA are shown in Table 1.
T49 3441-3469 Sentence denotes The median age was 79 years.
T50 3470-3604 Sentence denotes All experienced worsening respiratory status leading to invasive mechanical ventilation before the isolation of Aspergillus fumigatus.
T51 3605-3681 Sentence denotes The patients had been mechanically ventilated for a mean of 6.8 days (range:
T52 3682-3722 Sentence denotes 1‐14 days) before Aspergillus isolation.
T53 3723-3828 Sentence denotes At Aspergillus isolation, fever and leukocytosis were present in one and all four patients, respectively.
T54 3829-3901 Sentence denotes Serum galactomannan level was positive for only one patient (Patient 2).
T55 3902-3970 Sentence denotes All patients received concomitant broad‐spectrum antibiotic therapy.
T56 3971-4096 Sentence denotes Table 1 Clinical characteristics of critically ill COVID‐19‐infected patients with putative invasive pulmonary aspergillosis
T57 4097-4139 Sentence denotes Patient 1 Patient 2 Patient 3 Patient 4
T58 4140-4163 Sentence denotes Age (y) 82 79 77 77
T59 4164-4194 Sentence denotes Gender Male Male Male Male
T60 4195-4214 Sentence denotes Comorbid conditions
T61 4215-4244 Sentence denotes Hypertension No Yes No No
T62 4245-4270 Sentence denotes Diabetes No No No Yes
T63 4271-4311 Sentence denotes Coronary artery disease No Yes No No
T64 4312-4366 Sentence denotes Chronic obstructive pulmonary disease Yes No No No
T65 4367-4419 Sentence denotes History of cerebrovascular accident No Yes No No
T66 4420-4455 Sentence denotes History of cancer Yes Yes No No
T67 4456-4480 Sentence denotes Dementia No No No No
T68 4481-4605 Sentence denotes Timing of positive culture for Aspergillus fumigatus (hospital day) Day 15 and 20 Day 7, 10, and 16 Day 10 and 14 Day 10
T69 4606-4648 Sentence denotes Clinical features at Aspergillus isolation
T70 4649-4671 Sentence denotes Fever No No Yes No
T71 4672-4735 Sentence denotes Respiratory status at Aspergillus isolation IMV IMV IMV IMV
T72 4736-4915 Sentence denotes New radiographic abnormalities on chest CT or X‐ray Worsening infiltrates Opacities with dense consolidations Cavitary pneumonia Diffuse interstitial and patchy hazy opacities
T73 4916-4971 Sentence denotes White blood cell count (103/μL) 32.9 21.1 20.1 20.2
T74 4972-5015 Sentence denotes Platelet count (103/μL) 376 146 420 123
T75 5016-5061 Sentence denotes Procalcitonin (ng/mL) 0.16 0.30 3.30 9.34
T76 5062-5102 Sentence denotes Lactic acid (mmol/L) 1.0 3.6 1.6 3.7
T77 5103-5146 Sentence denotes Total bilirubin (mg/dL) 2.4 1.1 1.4 2.9
T78 5147-5191 Sentence denotes Serum creatinine (mg/dL) 2.6 3.1 1.5 4.1
T79 5192-5241 Sentence denotes Serum galactomannan NA 0.71 Negative Negative
T80 5242-5281 Sentence denotes Vasopressor support Yes Yes Yes Yes
T81 5282-5303 Sentence denotes Inpatient medications
T82 5304-5319 Sentence denotes Glucocorticoids
T83 5320-5385 Sentence denotes Cumulative dose in prednisone equivalent (mg) 932 1000 870 87
T84 5386-5443 Sentence denotes Starting date (hospital day) Day 8 Day 2 Day 2 Day 10
T85 5444-5471 Sentence denotes Duration (d) 10 10 12 3
T86 5472-5500 Sentence denotes Tocilizumab No Yes No No
T87 5501-5605 Sentence denotes Antibiotics Cefepime + Vancomycin Cefepime + Vancomycin Meropenem + Vancomycin Cefepime + Vancomycin
T88 5606-5679 Sentence denotes Antifungal therapy Voriconazole Voriconazole Voriconazole Caspofungin
T89 5680-5751 Sentence denotes Abbreviations: IMV, invasive mechanical ventilation; NA, not available.
T90 5752-5899 Sentence denotes John Wiley & Sons, Ltd This article is being made freely available through PubMed Central as part of the COVID-19 public health emergency response.
T91 5900-6082 Sentence denotes It can be used for unrestricted research re-use and analysis in any form or by any means with acknowledgement of the original source, for the duration of the public health emergency.
T92 6083-6219 Sentence denotes All four patients concomitantly received glucocorticoids, with three of which were already given steroids for a mean of 6.6 days (range:
T93 6220-6266 Sentence denotes 5‐8 days) before the isolation of Aspergillus.
T94 6267-6375 Sentence denotes In the remaining one patient (patients 4), glucocorticoid therapy was administered at Aspergillus isolation.
T95 6376-6449 Sentence denotes The overall mean duration of glucocorticoid exposure was 8.5 days (range:
T96 6450-6528 Sentence denotes 3‐11 days) with a mean cumulative prednisone equivalent dose of 722 mg (range:
T97 6529-6541 Sentence denotes 87‐1000 mg).
T98 6542-6615 Sentence denotes One patient received tocilizumab after Aspergillus isolation (Patient 3).
T99 6616-6807 Sentence denotes Patient 1 was an 82‐year‐old man with a history of COPD and pharyngeal cancer who was transferred to the ICU on hospital day 3 for acute respiratory distress syndrome (ARDS) and septic shock.
T100 6808-6941 Sentence denotes He was afebrile at Aspergillus isolation on hospital day 15, but respiratory status deteriorated with increased FiO2 from 50% to 80%.
T101 6942-7000 Sentence denotes A chest radiograph showed worsening bilateral infiltrates.
T102 7001-7055 Sentence denotes He was initially treated with cefepime and vancomycin.
T103 7056-7135 Sentence denotes Voriconazole was added 3 days after the first positive culture for Aspergillus.
T104 7136-7206 Sentence denotes Leukocytosis persisted on broad‐spectrum antibiotics and voriconazole.
T105 7207-7316 Sentence denotes He developed intermittent fever with worsening respiratory status and required continued vasopressor support.
T106 7317-7454 Sentence denotes The family subsequently requested no further aggressive treatment, and he passed away 17 days after the initiation of antifungal therapy.
T107 7455-7744 Sentence denotes Patient 2 was a 79‐year‐old man with a history of hypertension, coronary artery disease, transient ischaemic attack, and renal cell carcinoma who was transferred to the ICU on hospital day 6 for worsening acute hypoxemic respiratory failure requiring intubation and mechanical ventilation.
T108 7745-7866 Sentence denotes He was afebrile and had been on non‐invasive ventilation (NIV) for 6 days before Aspergillus isolation on hospital day 7.
T109 7867-7940 Sentence denotes Respiratory culture grew Aspergillus fumigatus and Staphylococcus aureus.
T110 7941-8077 Sentence denotes A chest CT showed dense bilateral lower lobe consolidations, multifocal ground‐glass opacities, pneumomediastinum and pneumopericardium.
T111 8078-8132 Sentence denotes He was initially treated with cefepime and vancomycin.
T112 8133-8205 Sentence denotes Voriconazole was started at the second positive culture for Aspergillus.
T113 8206-8295 Sentence denotes A repeat chest CT showed similar findings together with worsening ground‐glass opacities.
T114 8296-8486 Sentence denotes Despite subsequent treatment with meropenem, vancomycin, and voriconazole, he continued to deteriorate with persistent leukocytosis, worsening respiratory status, and multiorgan dysfunction.
T115 8487-8549 Sentence denotes He expired 13 days after the initiation of antifungal therapy.
T116 8550-8700 Sentence denotes Patient 3 was a 77‐year‐old man with no past medical history who was admitted to the ICU for acute hypoxemic respiratory failure requiring intubation.
T117 8701-8766 Sentence denotes He developed a fever at Aspergillus isolation on hospital day 10.
T118 8767-8806 Sentence denotes Respiratory status had remained stable.
T119 8807-8862 Sentence denotes He was initially treated with meropenem and vancomycin.
T120 8863-8918 Sentence denotes Fever persisted for 4 days, and voriconazole was added.
T121 8919-9188 Sentence denotes A chest CT showed bilateral patchy ground‐glass opacities, bilateral mid to lower lung zone predominant consolidative opacities, bilateral lower lobe cavitary lesions, the largest of which is seen within the right lung base and one of which contains an air‐fluid level.
T122 9189-9232 Sentence denotes He was then treated with voriconazole only.
T123 9233-9279 Sentence denotes Fever and leukocytosis subsided within 6 days.
T124 9280-9521 Sentence denotes A repeat chest CT after 2 weeks of voriconazole showed improved bilateral ground‐glass opacities, stable to mildly improved cavitary pneumonia within the bilateral lower lobes, and a new cavitary lesion within the subpleural left lower lobe.
T125 9522-9687 Sentence denotes The subsequent course was complicated by intravenous catheter‐related thrombophlebitis with Staphylococcus epidermidis bacteremia, which was treated with vancomycin.
T126 9688-9880 Sentence denotes He had a protracted hospital course with persistent metabolic encephalopathy, chronic respiratory failure required tracheostomy, multiorgan dysfunction and subsequent Staphylococcus pneumonia.
T127 9881-9997 Sentence denotes Due to a lack of improvement, the family requested comfort care, and he expired after 1 month of antifungal therapy.
T128 9998-10172 Sentence denotes Patient 4 was a 77‐year‐old man with a history of type 2 diabetes mellitus who was transferred to the ICU on hospital day 8 for worsening acute hypoxemic respiratory failure.
T129 10173-10367 Sentence denotes He had been on NIV for 8 days and on cefepime and vancomycin until respiratory status further deteriorated, which required intubation and transfer to the ICU 2 days before Aspergillus isolation.
T130 10368-10428 Sentence denotes He was afebrile at Aspergillus isolation on hospital day 10.
T131 10429-10485 Sentence denotes Chest radiographs showed diffuse ground‐glass opacities.
T132 10486-10549 Sentence denotes Caspofungin was started together with meropenem and vancomycin.
T133 10550-10653 Sentence denotes He continued to deteriorate with multiorgan dysfunction and expired after 3 days of antifungal therapy.
T134 10655-10668 Sentence denotes 4 DISCUSSION
T135 10669-10778 Sentence denotes Reports of pulmonary aspergillosis complicating severe COVID‐19 required mechanical ventilation are emerging.
T136 10779-10907 Sentence denotes 5 , 6 Most patients did not have underlying immunocompromising conditions, as observed in patients with ARDS due to influenza.
T137 10908-11104 Sentence denotes 2 Detailed data from patients who presented in the first waves of COVID‐19 pandemic are needed to define the incidence and clinical features of COVID‐19‐associated pulmonary aspergillosis (CAPA).
T138 11105-11225 Sentence denotes 8 We herein describe the clinical characteristics of four cases of critically ill COVID‐19 complicated by putative IPA.
T139 11226-11327 Sentence denotes Early diagnosis of IPA is critical but challenging in mechanically ventilated patients with COVID‐19.
T140 11328-11450 Sentence denotes Bronchoscopy and transbronchial biopsy are rarely performed given the risk of complications and transmission of the virus.
T141 11451-11533 Sentence denotes Further, pneumonia due to SARS‐CoV‐2 may obscure the radiological findings of IPA.
T142 11534-11721 Sentence denotes Consolidation is commonly seen in both COVID‐19 and superimposing pulmonary aspergillosis, and any new radiological signs could be obscured by background bilateral ground‐glass opacities.
T143 11722-11868 Sentence denotes Systemic inflammatory markers are almost always elevated with severe COVID‐19, which make them less useful to diagnose secondary fungal infection.
T144 11869-12126 Sentence denotes While it has been suggested that a low procalcitonin level may indicate a high likelihood for invasive fungal infection in critically ill patients with clinical signs of sepsis, 9 the procalcitonin level was elevated in only two patients with putative IPA.
T145 12127-12383 Sentence denotes At our institution, fungal cultures are routinely performed on bronchoscopy specimens and other respiratory specimens as clinically indicated; consequently, it is plausible there were instances of Aspergillus respiratory infection that were not identified.
T146 12384-12451 Sentence denotes Aspergillus infection can be seen in construction‐related clusters.
T147 12452-12623 Sentence denotes 10 While there was some construction at our institution during the first wave of COVID‐19, it was physically remote from the units where all of the cases were identified.
T148 12624-12768 Sentence denotes Further, there were no instances of isolating Aspergillus from any patients without the diagnosis of COVID‐19 within or around the study period.
T149 12769-12901 Sentence denotes For research purposes, EORTC/MSG Consensus Group have proposed definitions of proven, probable and possible invasive fungal disease.
T150 12902-13096 Sentence denotes 11 However, these consensus definitions are much less useful for immunocompetent patients in the ICU, as the diagnosis of probable or possible IPA requires the presence of classic host factors.
T151 13097-13294 Sentence denotes We used the AspICU criteria, which is an algorithm for diagnosing IPA in the ICU patients with positive Aspergillus endotracheal aspirate cultures, 7 to distinguish putative IPA from colonisation.
T152 13295-13438 Sentence denotes However, the performance characteristics of the algorithm for COVID‐19 patients have not been validated with autopsy or postmortem biopsy data.
T153 13439-13511 Sentence denotes Serum galactomannan was positive in only one patient in our case series.
T154 13512-13648 Sentence denotes Serum galactomannan is more specific for invasive aspergillosis than beta‐D‐glucan but has poor sensitivity in non‐neutropenic patients.
T155 13649-13765 Sentence denotes 12 Combining three case series of CAPA, only three (13%) out of 23 patients had positive serum galactomannan level.
T156 13766-13971 Sentence denotes 5 , 6 , 13 The less frequently elevated serum galactomannan levels might simply reflect colonisation rather than infection or suggest that angioinvasive pulmonary infection is a rare phenomenon in CAPA.
T157 13972-14059 Sentence denotes In any case, the diagnostic value of serum galactomannan for CAPA seems less promising.
T158 14060-14194 Sentence denotes All the patients with putative IPA died in our consecutive cases, suggesting the grave prognosis of critically ill patients with CAPA.
T159 14195-14374 Sentence denotes On the other hand, Alanio et al reported no significant difference in mortality between IPA and non‐IPA patients in a report of eight COVID‐19‐infected patients with putative IPA.
T160 14375-14500 Sentence denotes 6 Further data from multi‐institutional series are needed to clearly characterise the potential impact on mortality of CAPA.
T161 14501-14731 Sentence denotes Although dexamethasone was recently shown to decrease 28‐day mortality in mechanically ventilated patients with COVID‐19, 14 the majority of our cases received much higher doses of glucocorticoids than what was proven beneficial.
T162 14732-14915 Sentence denotes Since one of the potential sequelae of COVID‐19 is secondary fungal infections as our cases demonstrated, vigilance for secondary infections will be needed to reduce adverse outcomes.
T163 14916-15212 Sentence denotes Clinicians should have a high index of suspicion for CAPA when a critically ill patient with COVID‐19 in the ICU develops further respiratory decompensation, fevers or new or worsening radiographic abnormalities of the lungs, particularly if there is no response to empiric antibacterial therapy.
T164 15213-15393 Sentence denotes It is important to obtain a respiratory culture for fungal pathogens and a serum galactomannan level in these settings to attempt to identify this ominous complication of COVID‐19.
T165 15395-15416 Sentence denotes CONFLICTS OF INTEREST
T166 15417-15463 Sentence denotes There are no conflicts of interest to declare.
T167 15465-15485 Sentence denotes AUTHOR CONTRIBUTIONS
T168 15486-15500 Sentence denotes Hayato Mitaka:
T169 15501-15665 Sentence denotes Conceptualization (equal); data curation (equal); formal analysis (equal); investigation (equal); writing‐original draft (lead); writing‐review and editing (equal).
T170 15666-15674 Sentence denotes David C.
T171 15675-15683 Sentence denotes Perlman:
T172 15684-15788 Sentence denotes Conceptualization (equal); methodology (equal); supervision (equal); writing‐review and editing (equal).
T173 15789-15803 Sentence denotes Waleed Javaid:
T174 15804-15865 Sentence denotes Supervision (equal); writing‐review and editing (supporting).
T175 15866-15880 Sentence denotes Nadim Salomon:
T176 15881-16068 Sentence denotes Conceptualization (equal); data curation (equal); investigation (equal); methodology (equal); supervision (equal); writing‐original draft (supporting); writing‐review and editing (equal).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
80 91-99 Species denotes patients Tax:9606
81 120-128 Species denotes Patients Tax:9606
82 310-318 Species denotes patients Tax:9606
83 432-440 Species denotes patients Tax:9606
84 541-549 Species denotes patients Tax:9606
85 678-686 Species denotes patients Tax:9606
86 16-48 Disease denotes Invasive pulmonary aspergillosis MESH:D055744
87 76-90 Disease denotes critically ill MESH:D016638
88 134-158 Disease denotes coronavirus disease‐2019 MESH:C000657245
89 160-168 Disease denotes COVID‐19 MESH:C000657245
90 198-217 Disease denotes respiratory failure MESH:D012131
91 331-339 Disease denotes COVID‐19 MESH:C000657245
92 446-454 Disease denotes COVID‐19 MESH:C000657245
93 524-537 Disease denotes aspergillosis MESH:D001228
94 555-563 Disease denotes COVID‐19 MESH:C000657245
95 645-659 Disease denotes critically ill MESH:D016638
96 660-677 Disease denotes COVID‐19‐infected MESH:C000657245
97 692-715 Disease denotes pulmonary aspergillosis MESH:D055732
99 749-757 Species denotes PATIENTS Tax:9606
114 837-845 Species denotes patients Tax:9606
115 1404-1412 Species denotes patients Tax:9606
116 851-862 Species denotes Aspergillus Tax:746128
117 1070-1076 Chemical denotes oxygen MESH:D010100
118 1078-1082 Chemical denotes FiO2
119 1296-1306 Chemical denotes prednisone MESH:D011241
120 1769-1773 Chemical denotes FiO2
121 819-836 Disease denotes COVID‐19‐infected MESH:C000657245
122 1308-1313 Disease denotes Fever MESH:D005334
123 1425-1448 Disease denotes pulmonary aspergillosis MESH:D055732
124 1553-1558 Disease denotes fever MESH:D005334
125 1574-1579 Disease denotes fever MESH:D005334
126 1653-1658 Disease denotes fever MESH:D005334
127 1826-1845 Disease denotes respiratory failure MESH:D012131
159 2027-2035 Species denotes patients Tax:9606
160 2104-2125 Species denotes Aspergillus fumigatus Tax:746128
161 2186-2194 Species denotes patients Tax:9606
162 2240-2248 Species denotes patients Tax:9606
163 2535-2542 Species denotes patient Tax:9606
164 2638-2646 Species denotes patients Tax:9606
165 3179-3187 Species denotes patients Tax:9606
166 3285-3293 Species denotes patients Tax:9606
167 3392-3400 Species denotes patients Tax:9606
168 3582-3603 Species denotes Aspergillus fumigatus Tax:746128
169 3609-3617 Species denotes patients Tax:9606
170 3881-3888 Species denotes patient Tax:9606
171 3906-3914 Species denotes patients Tax:9606
172 3700-3711 Species denotes Aspergillus Tax:746128
173 3726-3737 Species denotes Aspergillus Tax:746128
174 3805-3813 Species denotes patients Tax:9606
175 2875-2885 Chemical denotes prednisone MESH:D011241
176 3835-3848 Chemical denotes galactomannan MESH:C012990
177 2041-2049 Disease denotes COVID‐19 MESH:C000657245
178 2305-2311 Disease denotes Cancer MESH:D009369
179 2313-2339 Disease denotes Invasive Fungal Infections MESH:D000072742
180 2388-2395 Disease denotes Allergy MESH:D004342
181 2400-2419 Disease denotes Infectious Diseases MESH:D003141
182 2476-2487 Disease denotes neutropenia MESH:D009503
183 2562-2574 Disease denotes lung disease MESH:D008171
184 2576-2613 Disease denotes chronic obstructive pulmonary disease MESH:D029424
185 2669-2674 Disease denotes fever MESH:D005334
186 2741-2766 Disease denotes respiratory insufficiency MESH:D012131
187 3073-3082 Disease denotes pneumonia MESH:D011014
188 3749-3754 Disease denotes fever MESH:D005334
189 3759-3771 Disease denotes leukocytosis MESH:D007964
215 4512-4533 Species denotes Aspergillus fumigatus Tax:746128
216 4627-4638 Species denotes Aspergillus Tax:746128
217 4694-4705 Species denotes Aspergillus Tax:746128
218 5153-5163 Chemical denotes creatinine MESH:D003404
219 5339-5349 Chemical denotes prednisone MESH:D011241
220 5472-5483 Chemical denotes Tocilizumab MESH:C502936
221 5514-5522 Chemical denotes Cefepime MESH:D000077723
222 5525-5535 Chemical denotes Vancomycin MESH:D014640
223 5537-5545 Chemical denotes Cefepime MESH:D000077723
224 5548-5558 Chemical denotes Vancomycin MESH:D014640
225 5560-5569 Chemical denotes Meropenem MESH:D000077731
226 5572-5582 Chemical denotes Vancomycin MESH:D014640
227 5584-5592 Chemical denotes Cefepime MESH:D000077723
228 5595-5605 Chemical denotes Vancomycin MESH:D014640
229 5626-5638 Chemical denotes Voriconazole MESH:D065819
230 5640-5652 Chemical denotes Voriconazole MESH:D065819
231 5654-5666 Chemical denotes Voriconazole MESH:D065819
232 4215-4227 Disease denotes Hypertension MESH:D006973
233 4245-4253 Disease denotes Diabetes MESH:D003920
234 4271-4294 Disease denotes Coronary artery disease MESH:D003324
235 4312-4349 Disease denotes Chronic obstructive pulmonary disease MESH:D029424
236 4378-4402 Disease denotes cerebrovascular accident MESH:D020521
237 4431-4437 Disease denotes cancer MESH:D009369
238 4649-4654 Disease denotes Fever MESH:D005334
239 4858-4867 Disease denotes pneumonia MESH:D011014
244 4041-4049 Species denotes patients Tax:9606
245 4008-4022 Disease denotes critically ill MESH:D016638
246 4023-4040 Disease denotes COVID‐19‐infected MESH:C000657245
247 4064-4096 Disease denotes invasive pulmonary aspergillosis MESH:D055744
249 5857-5865 Disease denotes COVID-19 MESH:C000657245
260 6092-6100 Species denotes patients Tax:9606
261 6288-6295 Species denotes patient Tax:9606
262 6297-6305 Species denotes patients Tax:9606
263 6546-6553 Species denotes patient Tax:9606
264 6254-6265 Species denotes Aspergillus Tax:746128
265 6353-6364 Species denotes Aspergillus Tax:746128
266 6581-6592 Species denotes Aspergillus Tax:746128
267 6180-6188 Chemical denotes steroids MESH:D013256
268 6484-6494 Chemical denotes prednisone MESH:D011241
269 6563-6574 Chemical denotes tocilizumab MESH:C502936
284 6827-6838 Species denotes Aspergillus Tax:746128
285 7123-7134 Species denotes Aspergillus Tax:746128
286 6920-6924 Chemical denotes FiO2
287 7031-7039 Chemical denotes cefepime MESH:D000077723
288 7044-7054 Chemical denotes vancomycin MESH:D014640
289 7056-7068 Chemical denotes Voriconazole MESH:D065819
290 7193-7205 Chemical denotes voriconazole MESH:D065819
291 6667-6671 Disease denotes COPD MESH:D029424
292 6687-6693 Disease denotes cancer MESH:D009369
293 6747-6782 Disease denotes acute respiratory distress syndrome MESH:D012128
294 6784-6788 Disease denotes ARDS MESH:D012128
295 6794-6806 Disease denotes septic shock MESH:D012772
296 7136-7148 Disease denotes Leukocytosis MESH:D007964
297 7233-7238 Disease denotes fever MESH:D005334
315 7892-7913 Species denotes Aspergillus fumigatus Tax:746128
316 7918-7939 Species denotes Staphylococcus aureus Tax:1280
317 7826-7837 Species denotes Aspergillus Tax:746128
318 8193-8204 Species denotes Aspergillus Tax:746128
319 8108-8116 Chemical denotes cefepime MESH:D000077723
320 8121-8131 Chemical denotes vancomycin MESH:D014640
321 8133-8145 Chemical denotes Voriconazole MESH:D065819
322 8330-8339 Chemical denotes meropenem MESH:D000077731
323 8341-8351 Chemical denotes vancomycin MESH:D014640
324 8357-8369 Chemical denotes voriconazole MESH:D065819
325 7505-7517 Disease denotes hypertension MESH:D006973
326 7519-7542 Disease denotes coronary artery disease MESH:D003324
327 7576-7596 Disease denotes renal cell carcinoma MESH:C538614
328 7676-7695 Disease denotes respiratory failure MESH:D012131
329 8059-8076 Disease denotes pneumopericardium MESH:D011026
330 8415-8427 Disease denotes leukocytosis MESH:D007964
331 8463-8485 Disease denotes multiorgan dysfunction MESH:D009102
352 8725-8736 Species denotes Aspergillus Tax:746128
353 9855-9869 Species denotes Staphylococcus Tax:1280
354 8837-8846 Chemical denotes meropenem MESH:D000077731
355 8851-8861 Chemical denotes vancomycin MESH:D014640
356 8895-8907 Chemical denotes voriconazole MESH:D065819
357 9214-9226 Chemical denotes voriconazole MESH:D065819
358 9315-9327 Chemical denotes voriconazole MESH:D065819
359 9676-9686 Chemical denotes vancomycin MESH:D014640
360 8659-8678 Disease denotes respiratory failure MESH:D012131
361 8716-8721 Disease denotes fever MESH:D005334
362 8863-8868 Disease denotes Fever MESH:D005334
363 9233-9238 Disease denotes Fever MESH:D005334
364 9243-9255 Disease denotes leukocytosis MESH:D007964
365 9413-9422 Disease denotes pneumonia MESH:D011014
366 9592-9608 Disease denotes thrombophlebitis MESH:D013924
367 9629-9651 Disease denotes epidermidis bacteremia MESH:D016470
368 9740-9764 Disease denotes metabolic encephalopathy MESH:D001928
369 9774-9793 Disease denotes respiratory failure MESH:D012131
370 9817-9839 Disease denotes multiorgan dysfunction MESH:D009102
371 9870-9879 Disease denotes pneumonia MESH:D011014
382 10345-10356 Species denotes Aspergillus Tax:746128
383 10387-10398 Species denotes Aspergillus Tax:746128
384 10210-10218 Chemical denotes cefepime MESH:D000077723
385 10223-10233 Chemical denotes vancomycin MESH:D014640
386 10486-10497 Chemical denotes Caspofungin MESH:D000077336
387 10524-10533 Chemical denotes meropenem MESH:D000077731
388 10538-10548 Chemical denotes vancomycin MESH:D014640
389 10048-10072 Disease denotes type 2 diabetes mellitus MESH:D003924
390 10152-10171 Disease denotes respiratory failure MESH:D012131
391 10583-10605 Disease denotes multiorgan dysfunction MESH:D009102
403 10792-10800 Species denotes patients Tax:9606
404 10871-10879 Species denotes patients Tax:9606
405 10930-10938 Species denotes patients Tax:9606
406 10680-10703 Disease denotes pulmonary aspergillosis MESH:D055732
407 10724-10732 Disease denotes COVID‐19 MESH:C000657245
408 10885-10889 Disease denotes ARDS MESH:D012128
409 10975-10983 Disease denotes COVID‐19 MESH:C000657245
410 11053-11061 Disease denotes COVID‐19 MESH:C000657245
411 11073-11096 Disease denotes pulmonary aspergillosis MESH:D055732
412 11173-11187 Disease denotes critically ill MESH:D016638
413 11188-11196 Disease denotes COVID‐19 MESH:C000657245
427 11304-11312 Species denotes patients Tax:9606
428 11477-11487 Species denotes SARS‐CoV‐2 Tax:2697049
429 12007-12015 Species denotes patients Tax:9606
430 12099-12107 Species denotes patients Tax:9606
431 11318-11326 Disease denotes COVID‐19 MESH:C000657245
432 11460-11469 Disease denotes pneumonia MESH:D011014
433 11573-11581 Disease denotes COVID‐19 MESH:C000657245
434 11600-11623 Disease denotes pulmonary aspergillosis MESH:D055732
435 11791-11799 Disease denotes COVID‐19 MESH:C000657245
436 11858-11867 Disease denotes infection MESH:D007239
437 11963-11988 Disease denotes invasive fungal infection MESH:D000072742
438 11992-12006 Disease denotes critically ill MESH:D016638
439 12039-12045 Disease denotes sepsis MESH:D018805
446 12691-12699 Species denotes patients Tax:9606
447 12670-12681 Species denotes Aspergillus Tax:746128
448 12324-12357 Disease denotes Aspergillus respiratory infection MESH:D012141
449 12384-12405 Disease denotes Aspergillus infection MESH:D001228
450 12534-12542 Disease denotes COVID‐19 MESH:C000657245
451 12725-12733 Disease denotes COVID‐19 MESH:C000657245
458 12984-12992 Species denotes patients Tax:9606
459 13178-13186 Species denotes patients Tax:9606
460 13366-13374 Species denotes patients Tax:9606
461 13201-13212 Species denotes Aspergillus Tax:746128
462 12877-12892 Disease denotes invasive fungal MESH:D000072742
463 13357-13365 Disease denotes COVID‐19 MESH:C000657245
476 13484-13491 Species denotes patient Tax:9606
477 13639-13647 Species denotes patients Tax:9606
478 13717-13725 Species denotes patients Tax:9606
479 13445-13458 Chemical denotes galactomannan MESH:C012990
480 13518-13531 Chemical denotes galactomannan MESH:C012990
481 13581-13594 Chemical denotes beta‐D‐glucan
482 13745-13758 Chemical denotes galactomannan MESH:C012990
483 13815-13828 Chemical denotes galactomannan MESH:C012990
484 14015-14028 Chemical denotes galactomannan MESH:C012990
485 13553-13575 Disease denotes invasive aspergillosis MESH:D055744
486 13882-13891 Disease denotes infection MESH:D007239
487 13908-13941 Disease denotes angioinvasive pulmonary infection MESH:D012141
509 14068-14076 Species denotes patients Tax:9606
510 14175-14183 Species denotes patients Tax:9606
511 14299-14307 Species denotes patients Tax:9606
512 14347-14355 Species denotes patients Tax:9606
513 14599-14607 Species denotes patients Tax:9606
514 14996-15003 Species denotes patient Tax:9606
515 14510-14523 Chemical denotes dexamethasone MESH:D003907
516 15294-15307 Chemical denotes galactomannan MESH:C012990
517 14095-14099 Disease denotes died MESH:D003643
518 14160-14174 Disease denotes critically ill MESH:D016638
519 14265-14274 Disease denotes mortality MESH:D003643
520 14329-14346 Disease denotes COVID‐19‐infected MESH:C000657245
521 14482-14491 Disease denotes mortality MESH:D003643
522 14562-14571 Disease denotes mortality MESH:D003643
523 14613-14621 Disease denotes COVID‐19 MESH:C000657245
524 14771-14779 Disease denotes COVID‐19 MESH:C000657245
525 14800-14810 Disease denotes infections MESH:D007239
526 14862-14872 Disease denotes infections MESH:D007239
527 14981-14995 Disease denotes critically ill MESH:D016638
528 15009-15017 Disease denotes COVID‐19 MESH:C000657245
529 15384-15392 Disease denotes COVID‐19 MESH:C000657245