
PMC:7646269 / 12592-13492
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7646269","sourcedb":"PMC","sourceid":"7646269","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7646269","text":"Early diagnosis of IPA is critical but challenging in mechanically ventilated patients with COVID‐19. Bronchoscopy and transbronchial biopsy are rarely performed given the risk of complications and transmission of the virus. Further, pneumonia due to SARS‐CoV‐2 may obscure the radiological findings of IPA. Consolidation is commonly seen in both COVID‐19 and superimposing pulmonary aspergillosis, and any new radiological signs could be obscured by background bilateral ground‐glass opacities. Systemic inflammatory markers are almost always elevated with severe COVID‐19, which make them less useful to diagnose secondary fungal infection. While it has been suggested that a low procalcitonin level may indicate a high likelihood for invasive fungal infection in critically ill patients with clinical signs of sepsis, 9 the procalcitonin level was elevated in only two patients with putative IPA.","tracks":[{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T86","span":{"begin":92,"end":100},"obj":"Disease"},{"id":"T87","span":{"begin":234,"end":243},"obj":"Disease"},{"id":"T88","span":{"begin":251,"end":255},"obj":"Disease"},{"id":"T89","span":{"begin":347,"end":355},"obj":"Disease"},{"id":"T90","span":{"begin":384,"end":397},"obj":"Disease"},{"id":"T91","span":{"begin":565,"end":573},"obj":"Disease"},{"id":"T92","span":{"begin":625,"end":641},"obj":"Disease"},{"id":"T93","span":{"begin":632,"end":641},"obj":"Disease"},{"id":"T94","span":{"begin":746,"end":762},"obj":"Disease"},{"id":"T95","span":{"begin":753,"end":762},"obj":"Disease"}],"attributes":[{"id":"A86","pred":"mondo_id","subj":"T86","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A87","pred":"mondo_id","subj":"T87","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A88","pred":"mondo_id","subj":"T88","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A89","pred":"mondo_id","subj":"T89","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A90","pred":"mondo_id","subj":"T90","obj":"http://purl.obolibrary.org/obo/MONDO_0005657"},{"id":"A91","pred":"mondo_id","subj":"T91","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A92","pred":"mondo_id","subj":"T92","obj":"http://purl.obolibrary.org/obo/MONDO_0002041"},{"id":"A93","pred":"mondo_id","subj":"T93","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A94","pred":"mondo_id","subj":"T94","obj":"http://purl.obolibrary.org/obo/MONDO_0002041"},{"id":"A95","pred":"mondo_id","subj":"T95","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"subj":"T86","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T87","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T88","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T89","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T90","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T91","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T92","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T93","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T94","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T95","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T68","span":{"begin":218,"end":223},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T69","span":{"begin":652,"end":655},"obj":"http://purl.obolibrary.org/obo/CLO_0051582"},{"id":"T70","span":{"begin":676,"end":677},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T71","span":{"begin":715,"end":716},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"attributes":[{"subj":"T68","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T69","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T70","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T71","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T89","span":{"begin":19,"end":22},"obj":"Chemical"},{"id":"T91","span":{"begin":303,"end":306},"obj":"Chemical"},{"id":"T93","span":{"begin":896,"end":899},"obj":"Chemical"}],"attributes":[{"id":"A89","pred":"chebi_id","subj":"T89","obj":"http://purl.obolibrary.org/obo/CHEBI_17824"},{"id":"A90","pred":"chebi_id","subj":"T89","obj":"http://purl.obolibrary.org/obo/CHEBI_30802"},{"id":"A91","pred":"chebi_id","subj":"T91","obj":"http://purl.obolibrary.org/obo/CHEBI_17824"},{"id":"A92","pred":"chebi_id","subj":"T91","obj":"http://purl.obolibrary.org/obo/CHEBI_30802"},{"id":"A93","pred":"chebi_id","subj":"T93","obj":"http://purl.obolibrary.org/obo/CHEBI_17824"},{"id":"A94","pred":"chebi_id","subj":"T93","obj":"http://purl.obolibrary.org/obo/CHEBI_30802"},{"subj":"T89","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T91","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T93","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T62","span":{"begin":19,"end":22},"obj":"Phenotype"},{"id":"T63","span":{"begin":234,"end":243},"obj":"Phenotype"},{"id":"T64","span":{"begin":303,"end":306},"obj":"Phenotype"},{"id":"T65","span":{"begin":737,"end":762},"obj":"Phenotype"},{"id":"T66","span":{"begin":813,"end":819},"obj":"Phenotype"},{"id":"T67","span":{"begin":896,"end":899},"obj":"Phenotype"}],"attributes":[{"id":"A62","pred":"hp_id","subj":"T62","obj":"http://purl.obolibrary.org/obo/HP_0020103"},{"id":"A63","pred":"hp_id","subj":"T63","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A64","pred":"hp_id","subj":"T64","obj":"http://purl.obolibrary.org/obo/HP_0020103"},{"id":"A65","pred":"hp_id","subj":"T65","obj":"http://purl.obolibrary.org/obo/HP_0020101"},{"id":"A66","pred":"hp_id","subj":"T66","obj":"http://purl.obolibrary.org/obo/HP_0100806"},{"id":"A67","pred":"hp_id","subj":"T67","obj":"http://purl.obolibrary.org/obo/HP_0020103"},{"subj":"T62","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T63","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T64","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T65","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T66","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T67","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T139","span":{"begin":0,"end":101},"obj":"Sentence"},{"id":"T140","span":{"begin":102,"end":224},"obj":"Sentence"},{"id":"T141","span":{"begin":225,"end":307},"obj":"Sentence"},{"id":"T142","span":{"begin":308,"end":495},"obj":"Sentence"},{"id":"T143","span":{"begin":496,"end":642},"obj":"Sentence"},{"id":"T144","span":{"begin":643,"end":900},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T139","pred":"source","obj":"LitCovid-sentences"},{"subj":"T140","pred":"source","obj":"LitCovid-sentences"},{"subj":"T141","pred":"source","obj":"LitCovid-sentences"},{"subj":"T142","pred":"source","obj":"LitCovid-sentences"},{"subj":"T143","pred":"source","obj":"LitCovid-sentences"},{"subj":"T144","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"427","span":{"begin":78,"end":86},"obj":"Species"},{"id":"428","span":{"begin":251,"end":261},"obj":"Species"},{"id":"429","span":{"begin":781,"end":789},"obj":"Species"},{"id":"430","span":{"begin":873,"end":881},"obj":"Species"},{"id":"431","span":{"begin":92,"end":100},"obj":"Disease"},{"id":"432","span":{"begin":234,"end":243},"obj":"Disease"},{"id":"433","span":{"begin":347,"end":355},"obj":"Disease"},{"id":"434","span":{"begin":374,"end":397},"obj":"Disease"},{"id":"435","span":{"begin":565,"end":573},"obj":"Disease"},{"id":"436","span":{"begin":632,"end":641},"obj":"Disease"},{"id":"437","span":{"begin":737,"end":762},"obj":"Disease"},{"id":"438","span":{"begin":766,"end":780},"obj":"Disease"},{"id":"439","span":{"begin":813,"end":819},"obj":"Disease"}],"attributes":[{"id":"A427","pred":"tao:has_database_id","subj":"427","obj":"Tax:9606"},{"id":"A428","pred":"tao:has_database_id","subj":"428","obj":"Tax:2697049"},{"id":"A429","pred":"tao:has_database_id","subj":"429","obj":"Tax:9606"},{"id":"A430","pred":"tao:has_database_id","subj":"430","obj":"Tax:9606"},{"id":"A431","pred":"tao:has_database_id","subj":"431","obj":"MESH:C000657245"},{"id":"A432","pred":"tao:has_database_id","subj":"432","obj":"MESH:D011014"},{"id":"A433","pred":"tao:has_database_id","subj":"433","obj":"MESH:C000657245"},{"id":"A434","pred":"tao:has_database_id","subj":"434","obj":"MESH:D055732"},{"id":"A435","pred":"tao:has_database_id","subj":"435","obj":"MESH:C000657245"},{"id":"A436","pred":"tao:has_database_id","subj":"436","obj":"MESH:D007239"},{"id":"A437","pred":"tao:has_database_id","subj":"437","obj":"MESH:D000072742"},{"id":"A438","pred":"tao:has_database_id","subj":"438","obj":"MESH:D016638"},{"id":"A439","pred":"tao:has_database_id","subj":"439","obj":"MESH:D018805"},{"subj":"427","pred":"source","obj":"LitCovid-PubTator"},{"subj":"428","pred":"source","obj":"LitCovid-PubTator"},{"subj":"429","pred":"source","obj":"LitCovid-PubTator"},{"subj":"430","pred":"source","obj":"LitCovid-PubTator"},{"subj":"431","pred":"source","obj":"LitCovid-PubTator"},{"subj":"432","pred":"source","obj":"LitCovid-PubTator"},{"subj":"433","pred":"source","obj":"LitCovid-PubTator"},{"subj":"434","pred":"source","obj":"LitCovid-PubTator"},{"subj":"435","pred":"source","obj":"LitCovid-PubTator"},{"subj":"436","pred":"source","obj":"LitCovid-PubTator"},{"subj":"437","pred":"source","obj":"LitCovid-PubTator"},{"subj":"438","pred":"source","obj":"LitCovid-PubTator"},{"subj":"439","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-MONDO","color":"#eca893","default":true},{"id":"LitCovid-PD-CLO","color":"#9398ec"},{"id":"LitCovid-PD-CHEBI","color":"#b2ec93"},{"id":"LitCovid-PD-HP","color":"#ec93cc"},{"id":"LitCovid-sentences","color":"#93e6ec"},{"id":"LitCovid-PubTator","color":"#ecd893"}]}]}}