PMC:7642385 / 11247-11779 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T84","span":{"begin":312,"end":315},"obj":"Body_part"},{"id":"T85","span":{"begin":385,"end":388},"obj":"Body_part"}],"attributes":[{"id":"A84","pred":"fma_id","subj":"T84","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A85","pred":"fma_id","subj":"T85","obj":"http://purl.org/sig/ont/fma/fma84795"}],"text":"OC43 and HKU1 epitopes can be presented on many HLAs. Epitopes were predicted using netMHCpan and netMHCIIpan in selected pathogens. The similarity between each SARS-CoV-2 epitope and pathogen epitope was calculated using the edit distance, and the number of shortest matches was enumerated. (a) Total number of HLA-I epitopes with a edit distance between 0 and 3. (b) Total number of HLA-II epitopes with a edit distance between 0 and 3. The pathogens are ordered per plot from highest to lowest, while the fill color is preserved."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T55","span":{"begin":161,"end":169},"obj":"Disease"}],"attributes":[{"id":"A55","pred":"mondo_id","subj":"T55","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"OC43 and HKU1 epitopes can be presented on many HLAs. Epitopes were predicted using netMHCpan and netMHCIIpan in selected pathogens. The similarity between each SARS-CoV-2 epitope and pathogen epitope was calculated using the edit distance, and the number of shortest matches was enumerated. (a) Total number of HLA-I epitopes with a edit distance between 0 and 3. (b) Total number of HLA-II epitopes with a edit distance between 0 and 3. The pathogens are ordered per plot from highest to lowest, while the fill color is preserved."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T107","span":{"begin":293,"end":294},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T108","span":{"begin":332,"end":333},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T109","span":{"begin":366,"end":367},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T110","span":{"begin":406,"end":407},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"OC43 and HKU1 epitopes can be presented on many HLAs. Epitopes were predicted using netMHCpan and netMHCIIpan in selected pathogens. The similarity between each SARS-CoV-2 epitope and pathogen epitope was calculated using the edit distance, and the number of shortest matches was enumerated. (a) Total number of HLA-I epitopes with a edit distance between 0 and 3. (b) Total number of HLA-II epitopes with a edit distance between 0 and 3. The pathogens are ordered per plot from highest to lowest, while the fill color is preserved."}

{"project":"LitCovid-sentences","denotations":[{"id":"T81","span":{"begin":54,"end":132},"obj":"Sentence"},{"id":"T82","span":{"begin":133,"end":438},"obj":"Sentence"},{"id":"T83","span":{"begin":439,"end":532},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"OC43 and HKU1 epitopes can be presented on many HLAs. Epitopes were predicted using netMHCpan and netMHCIIpan in selected pathogens. The similarity between each SARS-CoV-2 epitope and pathogen epitope was calculated using the edit distance, and the number of shortest matches was enumerated. (a) Total number of HLA-I epitopes with a edit distance between 0 and 3. (b) Total number of HLA-II epitopes with a edit distance between 0 and 3. The pathogens are ordered per plot from highest to lowest, while the fill color is preserved."}

{"project":"LitCovid-PubTator","denotations":[{"id":"210","span":{"begin":161,"end":171},"obj":"Species"},{"id":"211","span":{"begin":0,"end":4},"obj":"Species"},{"id":"212","span":{"begin":84,"end":93},"obj":"Chemical"},{"id":"213","span":{"begin":98,"end":109},"obj":"Chemical"}],"attributes":[{"id":"A210","pred":"tao:has_database_id","subj":"210","obj":"Tax:2697049"},{"id":"A211","pred":"tao:has_database_id","subj":"211","obj":"Tax:31631"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"OC43 and HKU1 epitopes can be presented on many HLAs. Epitopes were predicted using netMHCpan and netMHCIIpan in selected pathogens. The similarity between each SARS-CoV-2 epitope and pathogen epitope was calculated using the edit distance, and the number of shortest matches was enumerated. (a) Total number of HLA-I epitopes with a edit distance between 0 and 3. (b) Total number of HLA-II epitopes with a edit distance between 0 and 3. The pathogens are ordered per plot from highest to lowest, while the fill color is preserved."}