PMC:7640975 / 6419-7822
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T51 | 12-17 | Body_part | denotes | Cells | http://purl.org/sig/ont/fma/fma68646 |
| T52 | 23-33 | Body_part | denotes | Antibodies | http://purl.org/sig/ont/fma/fma62871 |
| T53 | 134-144 | Body_part | denotes | intestinal | http://purl.org/sig/ont/fma/fma7199 |
| T54 | 194-200 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T55 | 209-214 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T56 | 279-285 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
| T57 | 362-367 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T58 | 489-494 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T59 | 624-629 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T60 | 671-678 | Body_part | denotes | insulin | http://purl.org/sig/ont/fma/fma83365 |
| T61 | 844-849 | Body_part | denotes | Cells | http://purl.org/sig/ont/fma/fma68646 |
| T62 | 964-972 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T63 | 1023-1030 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T64 | 1076-1081 | Body_part | denotes | actin | http://purl.org/sig/ont/fma/fma67843 |
| T65 | 1256-1272 | Body_part | denotes | immunoglobulin G | http://purl.org/sig/ont/fma/fma62872 |
| T66 | 1274-1277 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
| T67 | 1355-1358 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T15 | 194-200 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T16 | 279-285 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T17 | 624-629 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T16 | 44-47 | Disease | denotes | CHN | http://purl.obolibrary.org/obo/MONDO_0011527 |
| T17 | 171-179 | Disease | denotes | diarrhea | http://purl.obolibrary.org/obo/MONDO_0001673 |
| T18 | 294-304 | Disease | denotes | infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T103 | 5-10 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | Virus |
| T104 | 12-17 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cells |
| T105 | 48-50 | http://purl.obolibrary.org/obo/CLO_0003788 | denotes | HN |
| T106 | 134-144 | http://purl.obolibrary.org/obo/UBERON_0000160 | denotes | intestinal |
| T107 | 134-144 | http://www.ebi.ac.uk/efo/EFO_0000834 | denotes | intestinal |
| T108 | 157-158 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T109 | 194-200 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T110 | 194-200 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T111 | 194-200 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T112 | 201-214 | http://purl.obolibrary.org/obo/CLO_0052497 | denotes | LLC-PK1 cells |
| T113 | 257-258 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T114 | 335-340 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T115 | 362-367 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T116 | 489-494 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T117 | 671-678 | http://purl.obolibrary.org/obo/PR_000009054 | denotes | insulin |
| T118 | 734-736 | http://purl.obolibrary.org/obo/CLO_0009141 | denotes | St |
| T119 | 734-736 | http://purl.obolibrary.org/obo/CLO_0050980 | denotes | St |
| T120 | 745-747 | http://purl.obolibrary.org/obo/CLO_0007815 | denotes | MO |
| T121 | 844-849 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cells |
| T122 | 876-877 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T123 | 1063-1068 | http://purl.obolibrary.org/obo/CLO_0007836 | denotes | Mouse |
| T124 | 1087-1092 | http://purl.obolibrary.org/obo/CLO_0007836 | denotes | mouse |
| T125 | 1234-1238 | http://purl.obolibrary.org/obo/NCBITaxon_9925 | denotes | goat |
| T126 | 1340-1344 | http://purl.obolibrary.org/obo/NCBITaxon_9925 | denotes | goat |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T23 | 671-678 | Chemical | denotes | insulin | http://purl.obolibrary.org/obo/CHEBI_145810 |
| T24 | 709-717 | Chemical | denotes | selenium | http://purl.obolibrary.org/obo/CHEBI_27568 |
| T25 | 764-774 | Chemical | denotes | penicillin | http://purl.obolibrary.org/obo/CHEBI_17334|http://purl.obolibrary.org/obo/CHEBI_51356 |
| T27 | 789-801 | Chemical | denotes | streptomycin | http://purl.obolibrary.org/obo/CHEBI_17076|http://purl.obolibrary.org/obo/CHEBI_58007 |
| T29 | 889-892 | Chemical | denotes | CO2 | http://purl.obolibrary.org/obo/CHEBI_16526 |
| T30 | 939-941 | Chemical | denotes | MA | http://purl.obolibrary.org/obo/CHEBI_474859|http://purl.obolibrary.org/obo/CHEBI_73610|http://purl.obolibrary.org/obo/CHEBI_90325 |
| T33 | 1023-1030 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T34 | 1184-1186 | Chemical | denotes | MA | http://purl.obolibrary.org/obo/CHEBI_474859|http://purl.obolibrary.org/obo/CHEBI_73610|http://purl.obolibrary.org/obo/CHEBI_90325 |
| T37 | 1313-1328 | Chemical | denotes | Alexa Fluor 488 | http://purl.obolibrary.org/obo/CHEBI_52661 |
| T38 | 1319-1324 | Chemical | denotes | Fluor | http://purl.obolibrary.org/obo/CHEBI_24061 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T7 | 171-179 | Phenotype | denotes | diarrhea | http://purl.obolibrary.org/obo/HP_0002014 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T24 | 1194-1222 | http://purl.obolibrary.org/obo/GO_0004601 | denotes | Horseradish peroxidase (HRP) |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T23 | 0-33 | Sentence | denotes | 2.1 Virus, Cells, and Antibodies |
| T24 | 34-82 | Sentence | denotes | The PDCoV CHN-HN-1601 strain (GenBank access no. |
| T25 | 83-223 | Sentence | denotes | MG832584) used in this study was isolated from the intestinal contents of a piglet with diarrhea using porcine kidney LLC-PK1 cells in 2017. |
| T26 | 224-353 | Sentence | denotes | The eighth passage of PDCoV with a titer of 108.45 50% tissue culture infectious dose (TCID50)/mL was used for virus inoculation. |
| T27 | 354-484 | Sentence | denotes | IPEC-J2 cells were generously provided by Prof. Yongchang Cao (School of Life Sciences, Sun Yat-Sen University, Guangzhou, China). |
| T28 | 485-843 | Sentence | denotes | The cells were cultivated in Dulbecco’s Modified Eagle Medium/Ham’s F-12 (DMEM/F12) (Gibco, Carlsbad, CA, USA) containing 10% fetal bovine serum (FBS; Gibco, Carlsbad, CA, USA), 5 μg/mL insulin, 5 μg/mL transferrin, 5 ng/mL selenium (Sigma-Aldrich, St. Louis, MO, USA), 100 U/mL penicillin and 0.1 mg/mL streptomycin (Solarbio Life Sciences, Beijing, China). |
| T29 | 844-948 | Sentence | denotes | Cells were cultured at 37 °C in a humidified CO2 incubator (Thermo Fisher Scientific, Waltham, MA, USA). |
| T30 | 949-1062 | Sentence | denotes | The monoclonal antibody (mAb), 1A3, raised against the PDCoV nucleocapsid protein was prepared in our laboratory. |
| T31 | 1063-1193 | Sentence | denotes | Mouse anti-β-actin mAb, mouse anti-IFIT1 and rabbit anti-ANAPC7 polyclonal antibodies were bought from Abcam (Cambridge, MA, USA). |
| T32 | 1194-1312 | Sentence | denotes | Horseradish peroxidase (HRP)-conjugated goat antimouse/rabbit immunoglobulin G (IgG) were obtained from Sigma-Aldrich. |
| T33 | 1313-1403 | Sentence | denotes | Alexa Fluor 488-conjugated goat antimouse IgG was the product of Thermo Fisher Scientific. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 149 | 1098-1103 | Gene | denotes | IFIT1 | Gene:15957 |
| 150 | 1120-1126 | Gene | denotes | ANAPC7 | Gene:56317 |
| 151 | 1194-1205 | Species | denotes | Horseradish | Tax:3704 |
| 152 | 617-623 | Species | denotes | bovine | Tax:9913 |
| 153 | 1063-1068 | Species | denotes | Mouse | Tax:10090 |
| 154 | 1087-1092 | Species | denotes | mouse | Tax:10090 |
| 155 | 1074-1081 | Gene | denotes | β-actin | Gene:728378 |
| 156 | 889-892 | Chemical | denotes | CO2 | MESH:D002245 |
| 157 | 1313-1328 | Chemical | denotes | Alexa Fluor 488 | |
| 158 | 38-55 | Disease | denotes | PDCoV CHN-HN-1601 | MESH:C535301 |
| 159 | 171-179 | Disease | denotes | diarrhea | MESH:D003967 |
| 160 | 668-678 | Disease | denotes | mL insulin | MESH:D007333 |
| 161 | 354-361 | CellLine | denotes | IPEC-J2 | CVCL:2246 |