PMC:7640975 / 63466-64566 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7640975","sourcedb":"PMC","sourceid":"7640975","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7640975","text":"The Supporting Information is available free of charge at https://pubs.acs.org/doi/10.1021/acs.jproteome.0c00592.Supplementary Figure S1: Repeatability analysis of different biological replicates used for iTRAQ-coupled LC–MS/MS proteomic analysis; Supplementary Figure S2: The original images of the entire PVDF membranes containing the target Western blots of Figure 2C (PDF)\nSupplementary File S1: A total of 5502 proteins identified in PDCoV- and mock-infected IPEC-J2 cells using iTRAQ-coupled LC-MS method (XLSX)\nSupplementary File S2: Viral proteins identified in PDCoV-infected IPEC-J2 cells (XLSX)\nSupplementary File S3: GO function annotation of the 78 differentially expressed proteins (XLSX)\nSupplementary File S4: COG function classification of the 78 differentially expressed proteins (XLSX)\nSupplementary File S5: KEGG pathway analysis of the 78 differentially expressed proteins (XLSX)\nSupplementary File S6: The top 20 KEGG pathway of the 23 significantly upregulated proteins (XLSX)\nSupplementary File S7: The top 20 KEGG pathway of the 55 significantly downregulated proteins (XLSX)","divisions":[{"label":"p","span":{"begin":113,"end":376}},{"label":"p","span":{"begin":377,"end":517}},{"label":"p","span":{"begin":518,"end":605}},{"label":"p","span":{"begin":606,"end":702}},{"label":"p","span":{"begin":703,"end":804}},{"label":"p","span":{"begin":805,"end":900}},{"label":"p","span":{"begin":901,"end":999}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T518","span":{"begin":416,"end":424},"obj":"Body_part"},{"id":"T519","span":{"begin":472,"end":477},"obj":"Body_part"},{"id":"T520","span":{"begin":547,"end":555},"obj":"Body_part"},{"id":"T521","span":{"begin":593,"end":598},"obj":"Body_part"},{"id":"T522","span":{"begin":687,"end":695},"obj":"Body_part"},{"id":"T523","span":{"begin":789,"end":797},"obj":"Body_part"},{"id":"T524","span":{"begin":885,"end":893},"obj":"Body_part"},{"id":"T525","span":{"begin":984,"end":992},"obj":"Body_part"},{"id":"T526","span":{"begin":1085,"end":1093},"obj":"Body_part"}],"attributes":[{"id":"A518","pred":"fma_id","subj":"T518","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A519","pred":"fma_id","subj":"T519","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A520","pred":"fma_id","subj":"T520","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A521","pred":"fma_id","subj":"T521","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A522","pred":"fma_id","subj":"T522","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A523","pred":"fma_id","subj":"T523","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A524","pred":"fma_id","subj":"T524","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A525","pred":"fma_id","subj":"T525","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A526","pred":"fma_id","subj":"T526","obj":"http://purl.org/sig/ont/fma/fma67257"},{"subj":"T518","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T519","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T520","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T521","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T522","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T523","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T524","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T525","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T526","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T712","span":{"begin":134,"end":136},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T713","span":{"begin":219,"end":221},"obj":"http://purl.obolibrary.org/obo/CL_0000453"},{"id":"T714","span":{"begin":222,"end":224},"obj":"http://purl.obolibrary.org/obo/CLO_0007874"},{"id":"T715","span":{"begin":225,"end":227},"obj":"http://purl.obolibrary.org/obo/CLO_0007874"},{"id":"T716","span":{"begin":269,"end":271},"obj":"http://purl.obolibrary.org/obo/CLO_0008922"},{"id":"T717","span":{"begin":269,"end":271},"obj":"http://purl.obolibrary.org/obo/CLO_0050052"},{"id":"T718","span":{"begin":312,"end":321},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"},{"id":"T719","span":{"begin":396,"end":398},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T720","span":{"begin":400,"end":401},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T721","span":{"begin":472,"end":477},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T722","span":{"begin":498,"end":500},"obj":"http://purl.obolibrary.org/obo/CL_0000453"},{"id":"T723","span":{"begin":501,"end":503},"obj":"http://purl.obolibrary.org/obo/CLO_0007874"},{"id":"T724","span":{"begin":537,"end":539},"obj":"http://purl.obolibrary.org/obo/CLO_0008922"},{"id":"T725","span":{"begin":537,"end":539},"obj":"http://purl.obolibrary.org/obo/CLO_0050052"},{"id":"T726","span":{"begin":593,"end":598},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T727","span":{"begin":824,"end":826},"obj":"http://purl.obolibrary.org/obo/CLO_0008933"}],"attributes":[{"subj":"T712","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T713","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T714","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T715","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T716","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T717","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T718","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T719","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T720","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T721","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T722","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T723","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T724","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T725","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T726","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T727","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T85","span":{"begin":219,"end":221},"obj":"Chemical"},{"id":"T86","span":{"begin":222,"end":224},"obj":"Chemical"},{"id":"T21623","span":{"begin":225,"end":227},"obj":"Chemical"},{"id":"T11161","span":{"begin":269,"end":271},"obj":"Chemical"},{"id":"T87398","span":{"begin":416,"end":424},"obj":"Chemical"},{"id":"T91659","span":{"begin":498,"end":500},"obj":"Chemical"},{"id":"T24070","span":{"begin":501,"end":503},"obj":"Chemical"},{"id":"T62528","span":{"begin":537,"end":539},"obj":"Chemical"},{"id":"T19691","span":{"begin":547,"end":555},"obj":"Chemical"},{"id":"T5727","span":{"begin":625,"end":627},"obj":"Chemical"},{"id":"T91121","span":{"begin":687,"end":695},"obj":"Chemical"},{"id":"T71159","span":{"begin":722,"end":724},"obj":"Chemical"},{"id":"T34813","span":{"begin":789,"end":797},"obj":"Chemical"},{"id":"T8298","span":{"begin":824,"end":826},"obj":"Chemical"},{"id":"T1072","span":{"begin":885,"end":893},"obj":"Chemical"},{"id":"T55282","span":{"begin":984,"end":992},"obj":"Chemical"},{"id":"T87000","span":{"begin":1085,"end":1093},"obj":"Chemical"}],"attributes":[{"id":"A26113","pred":"chebi_id","subj":"T85","obj":"http://purl.obolibrary.org/obo/CHEBI_73582"},{"id":"A29746","pred":"chebi_id","subj":"T86","obj":"http://purl.obolibrary.org/obo/CHEBI_73613"},{"id":"A58171","pred":"chebi_id","subj":"T21623","obj":"http://purl.obolibrary.org/obo/CHEBI_73613"},{"id":"A65220","pred":"chebi_id","subj":"T11161","obj":"http://purl.obolibrary.org/obo/CHEBI_29387"},{"id":"A78450","pred":"chebi_id","subj":"T87398","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A40538","pred":"chebi_id","subj":"T91659","obj":"http://purl.obolibrary.org/obo/CHEBI_73582"},{"id":"A86319","pred":"chebi_id","subj":"T24070","obj":"http://purl.obolibrary.org/obo/CHEBI_73613"},{"id":"A88752","pred":"chebi_id","subj":"T62528","obj":"http://purl.obolibrary.org/obo/CHEBI_29387"},{"id":"A45303","pred":"chebi_id","subj":"T19691","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A37820","pred":"chebi_id","subj":"T5727","obj":"http://purl.obolibrary.org/obo/CHEBI_29388"},{"id":"A67313","pred":"chebi_id","subj":"T91121","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A99586","pred":"chebi_id","subj":"T71159","obj":"http://purl.obolibrary.org/obo/CHEBI_29401"},{"id":"A27394","pred":"chebi_id","subj":"T34813","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A93751","pred":"chebi_id","subj":"T8298","obj":"http://purl.obolibrary.org/obo/CHEBI_29386"},{"id":"A35824","pred":"chebi_id","subj":"T1072","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A57703","pred":"chebi_id","subj":"T55282","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A40159","pred":"chebi_id","subj":"T87000","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"subj":"T85","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T86","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T21623","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T11161","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T87398","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T91659","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T24070","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T62528","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T19691","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T5727","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T91121","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T71159","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T34813","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T8298","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T1072","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T55282","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T87000","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T356","span":{"begin":0,"end":137},"obj":"Sentence"},{"id":"T357","span":{"begin":138,"end":272},"obj":"Sentence"},{"id":"T358","span":{"begin":273,"end":376},"obj":"Sentence"},{"id":"T359","span":{"begin":377,"end":399},"obj":"Sentence"},{"id":"T360","span":{"begin":400,"end":517},"obj":"Sentence"},{"id":"T361","span":{"begin":518,"end":540},"obj":"Sentence"},{"id":"T362","span":{"begin":541,"end":605},"obj":"Sentence"},{"id":"T363","span":{"begin":606,"end":702},"obj":"Sentence"},{"id":"T364","span":{"begin":703,"end":804},"obj":"Sentence"},{"id":"T365","span":{"begin":805,"end":900},"obj":"Sentence"},{"id":"T366","span":{"begin":901,"end":923},"obj":"Sentence"},{"id":"T367","span":{"begin":924,"end":999},"obj":"Sentence"},{"id":"T368","span":{"begin":1000,"end":1022},"obj":"Sentence"},{"id":"T369","span":{"begin":1023,"end":1100},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T356","pred":"source","obj":"LitCovid-sentences"},{"subj":"T357","pred":"source","obj":"LitCovid-sentences"},{"subj":"T358","pred":"source","obj":"LitCovid-sentences"},{"subj":"T359","pred":"source","obj":"LitCovid-sentences"},{"subj":"T360","pred":"source","obj":"LitCovid-sentences"},{"subj":"T361","pred":"source","obj":"LitCovid-sentences"},{"subj":"T362","pred":"source","obj":"LitCovid-sentences"},{"subj":"T363","pred":"source","obj":"LitCovid-sentences"},{"subj":"T364","pred":"source","obj":"LitCovid-sentences"},{"subj":"T365","pred":"source","obj":"LitCovid-sentences"},{"subj":"T366","pred":"source","obj":"LitCovid-sentences"},{"subj":"T367","pred":"source","obj":"LitCovid-sentences"},{"subj":"T368","pred":"source","obj":"LitCovid-sentences"},{"subj":"T369","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"1257","span":{"begin":307,"end":311},"obj":"Chemical"},{"id":"1260","span":{"begin":455,"end":463},"obj":"Disease"},{"id":"1261","span":{"begin":464,"end":471},"obj":"CellLine"},{"id":"1264","span":{"begin":570,"end":584},"obj":"Disease"},{"id":"1265","span":{"begin":585,"end":598},"obj":"CellLine"}],"attributes":[{"id":"A1257","pred":"tao:has_database_id","subj":"1257","obj":"MESH:C024865"},{"id":"A1260","pred":"tao:has_database_id","subj":"1260","obj":"MESH:D007239"},{"id":"A1261","pred":"tao:has_database_id","subj":"1261","obj":"CVCL:2246"},{"id":"A1264","pred":"tao:has_database_id","subj":"1264","obj":"MESH:D007239"},{"id":"A1265","pred":"tao:has_database_id","subj":"1265","obj":"CVCL:2246"},{"subj":"1257","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1260","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1261","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1264","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1265","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#93ec98","default":true},{"id":"LitCovid-PD-CLO","color":"#ec93a7"},{"id":"LitCovid-PD-CHEBI","color":"#93c1ec"},{"id":"LitCovid-sentences","color":"#dcec93"},{"id":"LitCovid-PubTator","color":"#e293ec"}]}]}}