PMC:7640975 / 16-871
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1 | 27-37 | Body_part | denotes | Intestinal | http://purl.org/sig/ont/fma/fma7199 |
| T2 | 38-54 | Body_part | denotes | Epithelial Cells | http://purl.org/sig/ont/fma/fma66768 |
| T3 | 49-54 | Body_part | denotes | Cells | http://purl.org/sig/ont/fma/fma68646 |
| T4 | 250-266 | Body_part | denotes | small intestinal | http://purl.org/sig/ont/fma/fma7200 |
| T5 | 267-283 | Body_part | denotes | epithelial cells | http://purl.org/sig/ont/fma/fma66768 |
| T6 | 278-283 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T7 | 314-319 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T8 | 556-564 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T9 | 598-603 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T10 | 671-679 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 250-266 | Body_part | denotes | small intestinal | http://purl.obolibrary.org/obo/UBERON_0002108 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 232-240 | Disease | denotes | diarrhea | http://purl.obolibrary.org/obo/MONDO_0001673 |
| T2 | 329-338 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 27-37 | http://purl.obolibrary.org/obo/UBERON_0000160 | denotes | Intestinal |
| T2 | 27-37 | http://www.ebi.ac.uk/efo/EFO_0000834 | denotes | Intestinal |
| T3 | 38-48 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | Epithelial |
| T4 | 49-54 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cells |
| T5 | 114-116 | http://purl.obolibrary.org/obo/CL_0000453 | denotes | LC |
| T6 | 117-119 | http://purl.obolibrary.org/obo/CLO_0007874 | denotes | MS |
| T7 | 120-122 | http://purl.obolibrary.org/obo/CLO_0007874 | denotes | MS |
| T8 | 250-266 | http://purl.obolibrary.org/obo/UBERON_0002108 | denotes | small intestinal |
| T9 | 267-277 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
| T10 | 278-283 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T11 | 314-319 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T12 | 417-425 | http://purl.obolibrary.org/obo/CLO_0007225 | denotes | labeling |
| T13 | 485-487 | http://purl.obolibrary.org/obo/CL_0000453 | denotes | LC |
| T14 | 488-490 | http://purl.obolibrary.org/obo/CLO_0007874 | denotes | MS |
| T15 | 491-493 | http://purl.obolibrary.org/obo/CLO_0007874 | denotes | MS |
| T16 | 598-603 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T17 | 605-606 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T1 | 114-116 | Chemical | denotes | LC | http://purl.obolibrary.org/obo/CHEBI_73582 |
| T2 | 117-119 | Chemical | denotes | MS | http://purl.obolibrary.org/obo/CHEBI_73613 |
| T3 | 120-122 | Chemical | denotes | MS | http://purl.obolibrary.org/obo/CHEBI_73613 |
| T4 | 485-487 | Chemical | denotes | LC | http://purl.obolibrary.org/obo/CHEBI_73582 |
| T5 | 488-490 | Chemical | denotes | MS | http://purl.obolibrary.org/obo/CHEBI_73613 |
| T6 | 491-493 | Chemical | denotes | MS | http://purl.obolibrary.org/obo/CHEBI_73613 |
| T7 | 556-564 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T8 | 671-679 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 232-240 | Phenotype | denotes | diarrhea | http://purl.obolibrary.org/obo/HP_0002014 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2 | 124-132 | Sentence | denotes | Abstract |
| T3 | 133-241 | Sentence | denotes | Porcine deltacoronavirus (PDCoV) is an emergent enteropathogenic coronavirus associated with swine diarrhea. |
| T4 | 242-347 | Sentence | denotes | Porcine small intestinal epithelial cells (IPEC) are the primary target cells of PDCoV infection in vivo. |
| T5 | 348-604 | Sentence | denotes | Here, isobaric tags for relative and absolute quantification (iTRAQ) labeling coupled to liquid chromatography–tandem mass spectrometry (LC-MS/MS) was used to quantitatively identify differentially expressed proteins (DEPs) in PDCoV-infected IPEC-J2 cells. |
| T6 | 605-719 | Sentence | denotes | A total of 78 DEPs, including 23 upregulated and 55 downregulated proteins, were identified at 24 h postinfection. |
| T7 | 720-789 | Sentence | denotes | The data are available via ProteomeXchange with identifier PXD019975. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 3 | 69-93 | Species | denotes | Porcine Deltacoronavirus | Tax:1586324 |
| 4 | 19-26 | Species | denotes | Porcine | Tax:28344 |
| 5 | 55-63 | Disease | denotes | Infected | MESH:D007239 |
| 27 | 133-157 | Species | denotes | Porcine deltacoronavirus | Tax:1586324 |
| 28 | 198-209 | Species | denotes | coronavirus | Tax:11118 |
| 29 | 226-231 | Species | denotes | swine | Tax:9823 |
| 30 | 242-249 | Species | denotes | Porcine | Tax:28344 |
| 31 | 232-240 | Disease | denotes | diarrhea | MESH:D003967 |
| 32 | 329-338 | Disease | denotes | infection | MESH:D007239 |
| 33 | 575-589 | Disease | denotes | PDCoV-infected | MESH:D007239 |
| 35 | 590-597 | CellLine | denotes | IPEC-J2 | CVCL:2246 |