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PMC:7640975 / 15917-17366 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T108 59-64 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T109 83-87 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T110 514-521 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T111 708-715 Body_part denotes Genomes http://purl.org/sig/ont/fma/fma84116
T112 1219-1226 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T113 1227-1234 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T23 290-292 Disease denotes MF http://purl.obolibrary.org/obo/MONDO_0009691|http://purl.obolibrary.org/obo/MONDO_0020481

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T222 59-64 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T223 83-87 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T224 241-259 http://purl.obolibrary.org/obo/GO_0005575 denotes cellular component
T225 261-263 http://purl.obolibrary.org/obo/GO_0005575 denotes CC
T226 429-433 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T227 450-453 http://purl.obolibrary.org/obo/CLO_0001547 denotes a p
T228 698-703 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Genes
T229 931-932 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T230 950-958 http://purl.obolibrary.org/obo/CLO_0001040 denotes 1 × 10–5
T231 1116-1120 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T127 236-238 Chemical denotes BP http://purl.obolibrary.org/obo/CHEBI_29865
T128 261-263 Chemical denotes CC http://purl.obolibrary.org/obo/CHEBI_28940
T129 290-292 Chemical denotes MF http://purl.obolibrary.org/obo/CHEBI_74708
T130 514-521 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T131 1219-1226 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T132 1227-1234 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T86 0-294 Sentence denotes The data for the identified DEPs of PDCoV-infected IPEC-J2 cells were submitted to Gene Ontology (GO) Terms (http://geneontology.org/) for GO analysis, by which the DEPs were assigned into three branches of ontology—biological process (BP), cellular component (CC), and molecular function (MF).
T87 295-509 Sentence denotes GO enrichment analysis for the DEPs was done using the Goatools software (https://github.com/tanghaibao/GOatools) with Fisher’s exact test, and those with a p-value < 0.05 were thought to be significantly enriched.
T88 510-671 Sentence denotes The protein database of clusters of Orthologous Groups (COG; http://www.ncbi.nlm.nih.gov/COG/) was also used to assign possible functions to the identified DEPs.
T89 672-978 Sentence denotes The Kyoto Encyclopedia of Genes and Genomes (KEGG; http://www.genome.jp/kegg/) pathway analyses were performed to reveal the potential functions of the DEPs, which were annotated using the BlastP program of the Diamond software against the KEGG database with a cutoff E-value ≤ 1 × 10–5 and identity ≥0.98.
T90 979-1449 Sentence denotes The pathway enrichment statistics were performed using the KOBAS software (http://kobas.cbi.pku.edu.cn/home.do/) with the Fisher’s exact test, and those with p-values < 0.05 were regarded as statistically significant.30,31 Furthermore, the protein–protein interaction networks were created using the online STRING database (http://string-db.org/) and visualized by Cytoscape (https://cytoscape.org/), which was widely used for analyzing the relationships between DEPs.32

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
272 36-50 Disease denotes PDCoV-infected MESH:D007239
273 51-58 CellLine denotes IPEC-J2 CVCL:2246