PMC:7640975 / 14-741 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7640975","sourcedb":"PMC","sourceid":"7640975","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7640975","text":"roteomic Analysis of Porcine Intestinal Epithelial Cells Infected with Porcine Deltacoronavirus Using iTRAQ-Coupled LC-MS/MS\n\nAbstract\nPorcine deltacoronavirus (PDCoV) is an emergent enteropathogenic coronavirus associated with swine diarrhea. Porcine small intestinal epithelial cells (IPEC) are the primary target cells of PDCoV infection in vivo. Here, isobaric tags for relative and absolute quantification (iTRAQ) labeling coupled to liquid chromatography–tandem mass spectrometry (LC-MS/MS) was used to quantitatively identify differentially expressed proteins (DEPs) in PDCoV-infected IPEC-J2 cells. A total of 78 DEPs, including 23 upregulated and 55 downregulated proteins, were identified at 24 h postinfection. The d","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T1","span":{"begin":29,"end":39},"obj":"Body_part"},{"id":"T2","span":{"begin":40,"end":56},"obj":"Body_part"},{"id":"T3","span":{"begin":51,"end":56},"obj":"Body_part"},{"id":"T4","span":{"begin":252,"end":268},"obj":"Body_part"},{"id":"T5","span":{"begin":269,"end":285},"obj":"Body_part"},{"id":"T6","span":{"begin":280,"end":285},"obj":"Body_part"},{"id":"T7","span":{"begin":316,"end":321},"obj":"Body_part"},{"id":"T8","span":{"begin":558,"end":566},"obj":"Body_part"},{"id":"T9","span":{"begin":600,"end":605},"obj":"Body_part"},{"id":"T10","span":{"begin":673,"end":681},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"fma_id","subj":"T1","obj":"http://purl.org/sig/ont/fma/fma7199"},{"id":"A2","pred":"fma_id","subj":"T2","obj":"http://purl.org/sig/ont/fma/fma66768"},{"id":"A3","pred":"fma_id","subj":"T3","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A4","pred":"fma_id","subj":"T4","obj":"http://purl.org/sig/ont/fma/fma7200"},{"id":"A5","pred":"fma_id","subj":"T5","obj":"http://purl.org/sig/ont/fma/fma66768"},{"id":"A6","pred":"fma_id","subj":"T6","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A7","pred":"fma_id","subj":"T7","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A8","pred":"fma_id","subj":"T8","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A9","pred":"fma_id","subj":"T9","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A10","pred":"fma_id","subj":"T10","obj":"http://purl.org/sig/ont/fma/fma67257"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T1","span":{"begin":252,"end":268},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0002108"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T1","span":{"begin":234,"end":242},"obj":"Disease"},{"id":"T2","span":{"begin":331,"end":340},"obj":"Disease"}],"attributes":[{"id":"A1","pred":"mondo_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MONDO_0001673"},{"id":"A2","pred":"mondo_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T1","span":{"begin":29,"end":39},"obj":"http://purl.obolibrary.org/obo/UBERON_0000160"},{"id":"T2","span":{"begin":29,"end":39},"obj":"http://www.ebi.ac.uk/efo/EFO_0000834"},{"id":"T3","span":{"begin":40,"end":50},"obj":"http://purl.obolibrary.org/obo/CL_0000066"},{"id":"T4","span":{"begin":51,"end":56},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T5","span":{"begin":116,"end":118},"obj":"http://purl.obolibrary.org/obo/CL_0000453"},{"id":"T6","span":{"begin":119,"end":121},"obj":"http://purl.obolibrary.org/obo/CLO_0007874"},{"id":"T7","span":{"begin":122,"end":124},"obj":"http://purl.obolibrary.org/obo/CLO_0007874"},{"id":"T8","span":{"begin":252,"end":268},"obj":"http://purl.obolibrary.org/obo/UBERON_0002108"},{"id":"T9","span":{"begin":269,"end":279},"obj":"http://purl.obolibrary.org/obo/CL_0000066"},{"id":"T10","span":{"begin":280,"end":285},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T11","span":{"begin":316,"end":321},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T12","span":{"begin":419,"end":427},"obj":"http://purl.obolibrary.org/obo/CLO_0007225"},{"id":"T13","span":{"begin":487,"end":489},"obj":"http://purl.obolibrary.org/obo/CL_0000453"},{"id":"T14","span":{"begin":490,"end":492},"obj":"http://purl.obolibrary.org/obo/CLO_0007874"},{"id":"T15","span":{"begin":493,"end":495},"obj":"http://purl.obolibrary.org/obo/CLO_0007874"},{"id":"T16","span":{"begin":600,"end":605},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T17","span":{"begin":607,"end":608},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"attributes":[{"subj":"T1","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T11","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T12","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T13","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T14","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T15","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T16","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T17","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T1","span":{"begin":116,"end":118},"obj":"Chemical"},{"id":"T2","span":{"begin":119,"end":121},"obj":"Chemical"},{"id":"T3","span":{"begin":122,"end":124},"obj":"Chemical"},{"id":"T4","span":{"begin":487,"end":489},"obj":"Chemical"},{"id":"T5","span":{"begin":490,"end":492},"obj":"Chemical"},{"id":"T6","span":{"begin":493,"end":495},"obj":"Chemical"},{"id":"T7","span":{"begin":558,"end":566},"obj":"Chemical"},{"id":"T8","span":{"begin":673,"end":681},"obj":"Chemical"}],"attributes":[{"id":"A1","pred":"chebi_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CHEBI_73582"},{"id":"A2","pred":"chebi_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CHEBI_73613"},{"id":"A3","pred":"chebi_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CHEBI_73613"},{"id":"A4","pred":"chebi_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CHEBI_73582"},{"id":"A5","pred":"chebi_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CHEBI_73613"},{"id":"A6","pred":"chebi_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/CHEBI_73613"},{"id":"A7","pred":"chebi_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A8","pred":"chebi_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T1","span":{"begin":234,"end":242},"obj":"Phenotype"}],"attributes":[{"id":"A1","pred":"hp_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/HP_0002014"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T2","span":{"begin":126,"end":134},"obj":"Sentence"},{"id":"T3","span":{"begin":135,"end":243},"obj":"Sentence"},{"id":"T4","span":{"begin":244,"end":349},"obj":"Sentence"},{"id":"T5","span":{"begin":350,"end":606},"obj":"Sentence"},{"id":"T6","span":{"begin":607,"end":721},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T2","pred":"source","obj":"LitCovid-sentences"},{"subj":"T3","pred":"source","obj":"LitCovid-sentences"},{"subj":"T4","pred":"source","obj":"LitCovid-sentences"},{"subj":"T5","pred":"source","obj":"LitCovid-sentences"},{"subj":"T6","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"3","span":{"begin":71,"end":95},"obj":"Species"},{"id":"4","span":{"begin":21,"end":28},"obj":"Species"},{"id":"5","span":{"begin":57,"end":65},"obj":"Disease"},{"id":"27","span":{"begin":135,"end":159},"obj":"Species"},{"id":"28","span":{"begin":200,"end":211},"obj":"Species"},{"id":"29","span":{"begin":228,"end":233},"obj":"Species"},{"id":"30","span":{"begin":244,"end":251},"obj":"Species"},{"id":"31","span":{"begin":234,"end":242},"obj":"Disease"},{"id":"32","span":{"begin":331,"end":340},"obj":"Disease"},{"id":"33","span":{"begin":577,"end":591},"obj":"Disease"},{"id":"35","span":{"begin":592,"end":599},"obj":"CellLine"}],"attributes":[{"id":"A3","pred":"tao:has_database_id","subj":"3","obj":"Tax:1586324"},{"id":"A4","pred":"tao:has_database_id","subj":"4","obj":"Tax:28344"},{"id":"A5","pred":"tao:has_database_id","subj":"5","obj":"MESH:D007239"},{"id":"A27","pred":"tao:has_database_id","subj":"27","obj":"Tax:1586324"},{"id":"A28","pred":"tao:has_database_id","subj":"28","obj":"Tax:11118"},{"id":"A29","pred":"tao:has_database_id","subj":"29","obj":"Tax:9823"},{"id":"A30","pred":"tao:has_database_id","subj":"30","obj":"Tax:28344"},{"id":"A31","pred":"tao:has_database_id","subj":"31","obj":"MESH:D003967"},{"id":"A32","pred":"tao:has_database_id","subj":"32","obj":"MESH:D007239"},{"id":"A33","pred":"tao:has_database_id","subj":"33","obj":"MESH:D007239"},{"id":"A35","pred":"tao:has_database_id","subj":"35","obj":"CVCL:2246"},{"subj":"3","pred":"source","obj":"LitCovid-PubTator"},{"subj":"4","pred":"source","obj":"LitCovid-PubTator"},{"subj":"5","pred":"source","obj":"LitCovid-PubTator"},{"subj":"27","pred":"source","obj":"LitCovid-PubTator"},{"subj":"28","pred":"source","obj":"LitCovid-PubTator"},{"subj":"29","pred":"source","obj":"LitCovid-PubTator"},{"subj":"30","pred":"source","obj":"LitCovid-PubTator"},{"subj":"31","pred":"source","obj":"LitCovid-PubTator"},{"subj":"32","pred":"source","obj":"LitCovid-PubTator"},{"subj":"33","pred":"source","obj":"LitCovid-PubTator"},{"subj":"35","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#93e6ec","default":true},{"id":"LitCovid-PD-UBERON","color":"#ecd893"},{"id":"LitCovid-PD-MONDO","color":"#be93ec"},{"id":"LitCovid-PD-CLO","color":"#93eca4"},{"id":"LitCovid-PD-CHEBI","color":"#ec939c"},{"id":"LitCovid-PD-HP","color":"#93b6ec"},{"id":"LitCovid-sentences","color":"#d0ec93"},{"id":"LitCovid-PubTator","color":"#ec93ea"}]}]}}