> top > docs > PMC:7640975 > spans > 12867-14225 > annotations

PMC:7640975 / 12867-14225 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T100 661-670 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T20 661-670 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T180 5-7 http://purl.obolibrary.org/obo/CL_0000453 denotes LC
T181 8-10 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T182 11-13 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T183 23-25 http://purl.obolibrary.org/obo/CL_0000453 denotes LC
T184 26-28 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T185 29-31 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T186 48-55 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeled
T187 56-64 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T188 88-89 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T189 257-264 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeled
T190 265-273 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T191 279-280 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T192 340-348 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T193 385-386 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T194 451-452 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T195 527-528 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T196 770-771 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T197 844-846 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T198 851-853 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T199 854-856 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T200 858-859 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T201 865-867 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T202 1007-1008 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T203 1041-1043 http://purl.obolibrary.org/obo/CLO_0007874 denotes ms
T204 1144-1146 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T205 1147-1149 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T206 1226-1233 http://purl.obolibrary.org/obo/CLO_0001040 denotes 1 × 105
T207 1254-1256 http://purl.obolibrary.org/obo/CLO_0007874 denotes ms
T208 1285-1287 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T89 5-7 Chemical denotes LC http://purl.obolibrary.org/obo/CHEBI_73582
T90 8-10 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T91 11-13 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T92 23-25 Chemical denotes LC http://purl.obolibrary.org/obo/CHEBI_73582
T93 26-28 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T94 29-31 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T95 56-64 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T96 265-273 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T97 340-348 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T98 475-486 Chemical denotes formic acid http://purl.obolibrary.org/obo/CHEBI_30751
T99 482-486 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T100 500-512 Chemical denotes acetonitrile http://purl.obolibrary.org/obo/CHEBI_38472
T101 551-562 Chemical denotes formic acid http://purl.obolibrary.org/obo/CHEBI_30751
T102 558-562 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T103 577-589 Chemical denotes acetonitrile http://purl.obolibrary.org/obo/CHEBI_38472
T104 606-609 Chemical denotes ion http://purl.obolibrary.org/obo/CHEBI_24870
T105 844-846 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T106 851-853 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T107 854-856 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T108 865-867 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T109 998-1002 Chemical denotes ions http://purl.obolibrary.org/obo/CHEBI_24870
T110 1017-1020 Chemical denotes ion http://purl.obolibrary.org/obo/CHEBI_24870
T111 1059-1063 Chemical denotes ions http://purl.obolibrary.org/obo/CHEBI_24870
T112 1144-1146 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T113 1147-1149 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T114 1234-1238 Chemical denotes ions http://purl.obolibrary.org/obo/CHEBI_24870

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T70 0-22 Sentence denotes 2.6 LC-MS/MS Analysis
T71 23-230 Sentence denotes LC-MS/MS analyses of the labeled peptides were carried out using a Q-Exactive mass spectrometer (Thermo Fisher Scientific, San Jose, CA, USA) combined with an EASY-nLC 1200 system (Thermo Fisher Scientific).
T72 231-591 Sentence denotes After loading 2 μg of the labeled peptides onto a C18 reversed phase HPLC column (Thermo Fisher Scientific), peptides were chromatographed for 120 min at a flow rate of 300 nL/min over gradients from 2–80% (mobile phase A comprising 0.1% (v/v) formic acid and 2% (v/v) acetonitrile; mobile phase B comprising 0.1% (v/v) formic acid and 80% (v/v) acetonitrile).
T73 592-733 Sentence denotes The following ion source parameters, including spray voltage 1.8 kV, capillary temperature 275 °C and declustering potential 100 V, were set.
T74 734-857 Sentence denotes The mass spectrometer was run using a data-dependent Top-20 acquisition mode, switching automatically between MS and MS/MS.
T75 858-1044 Sentence denotes A full MS scan ranging from 350 to 1300 m/z was conducted at 70 000 resolution with an automatic gain control (AGC) target value of 3 × 106 ions and a maximum ion transfer (IT) of 20 ms.
T76 1045-1358 Sentence denotes The precursor ions were fragmented by means of high-energy collisional dissociation (HCD), and all MS/MS spectra were scanned using the following parameters: resolution 17 500; AGC 1 × 105 ions; maximum IT 50 ms; dynamic exclusion duration 18 s; normalized collision energy 30%; and intensity threshold 1.6 × 105.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
249 340-348 Chemical denotes peptides MESH:D010455
250 475-486 Chemical denotes formic acid MESH:C030544
251 500-512 Chemical denotes acetonitrile MESH:C032159
252 551-562 Chemical denotes formic acid MESH:C030544
253 577-589 Chemical denotes acetonitrile MESH:C032159