PMC:7640975 / 0-916 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T1","span":{"begin":43,"end":53},"obj":"Body_part"},{"id":"T2","span":{"begin":54,"end":70},"obj":"Body_part"},{"id":"T3","span":{"begin":65,"end":70},"obj":"Body_part"},{"id":"T4","span":{"begin":266,"end":282},"obj":"Body_part"},{"id":"T5","span":{"begin":283,"end":299},"obj":"Body_part"},{"id":"T6","span":{"begin":294,"end":299},"obj":"Body_part"},{"id":"T7","span":{"begin":330,"end":335},"obj":"Body_part"},{"id":"T8","span":{"begin":572,"end":580},"obj":"Body_part"},{"id":"T9","span":{"begin":614,"end":619},"obj":"Body_part"},{"id":"T10","span":{"begin":687,"end":695},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"fma_id","subj":"T1","obj":"http://purl.org/sig/ont/fma/fma7199"},{"id":"A2","pred":"fma_id","subj":"T2","obj":"http://purl.org/sig/ont/fma/fma66768"},{"id":"A3","pred":"fma_id","subj":"T3","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A4","pred":"fma_id","subj":"T4","obj":"http://purl.org/sig/ont/fma/fma7200"},{"id":"A5","pred":"fma_id","subj":"T5","obj":"http://purl.org/sig/ont/fma/fma66768"},{"id":"A6","pred":"fma_id","subj":"T6","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A7","pred":"fma_id","subj":"T7","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A8","pred":"fma_id","subj":"T8","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A9","pred":"fma_id","subj":"T9","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A10","pred":"fma_id","subj":"T10","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"Quantitative Proteomic Analysis of Porcine Intestinal Epithelial Cells Infected with Porcine Deltacoronavirus Using iTRAQ-Coupled LC-MS/MS\n\nAbstract\nPorcine deltacoronavirus (PDCoV) is an emergent enteropathogenic coronavirus associated with swine diarrhea. Porcine small intestinal epithelial cells (IPEC) are the primary target cells of PDCoV infection in vivo. Here, isobaric tags for relative and absolute quantification (iTRAQ) labeling coupled to liquid chromatography–tandem mass spectrometry (LC-MS/MS) was used to quantitatively identify differentially expressed proteins (DEPs) in PDCoV-infected IPEC-J2 cells. A total of 78 DEPs, including 23 upregulated and 55 downregulated proteins, were identified at 24 h postinfection. The data are available via ProteomeXchange with identifier PXD019975. To ensure reliability of the proteomics data, two randomly selected DEPs, the downregulated anaphase-promoting"}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T1","span":{"begin":266,"end":282},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0002108"}],"text":"Quantitative Proteomic Analysis of Porcine Intestinal Epithelial Cells Infected with Porcine Deltacoronavirus Using iTRAQ-Coupled LC-MS/MS\n\nAbstract\nPorcine deltacoronavirus (PDCoV) is an emergent enteropathogenic coronavirus associated with swine diarrhea. Porcine small intestinal epithelial cells (IPEC) are the primary target cells of PDCoV infection in vivo. Here, isobaric tags for relative and absolute quantification (iTRAQ) labeling coupled to liquid chromatography–tandem mass spectrometry (LC-MS/MS) was used to quantitatively identify differentially expressed proteins (DEPs) in PDCoV-infected IPEC-J2 cells. A total of 78 DEPs, including 23 upregulated and 55 downregulated proteins, were identified at 24 h postinfection. The data are available via ProteomeXchange with identifier PXD019975. To ensure reliability of the proteomics data, two randomly selected DEPs, the downregulated anaphase-promoting"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T1","span":{"begin":248,"end":256},"obj":"Disease"},{"id":"T2","span":{"begin":345,"end":354},"obj":"Disease"}],"attributes":[{"id":"A1","pred":"mondo_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MONDO_0001673"},{"id":"A2","pred":"mondo_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"}],"text":"Quantitative Proteomic Analysis of Porcine Intestinal Epithelial Cells Infected with Porcine Deltacoronavirus Using iTRAQ-Coupled LC-MS/MS\n\nAbstract\nPorcine deltacoronavirus (PDCoV) is an emergent enteropathogenic coronavirus associated with swine diarrhea. Porcine small intestinal epithelial cells (IPEC) are the primary target cells of PDCoV infection in vivo. Here, isobaric tags for relative and absolute quantification (iTRAQ) labeling coupled to liquid chromatography–tandem mass spectrometry (LC-MS/MS) was used to quantitatively identify differentially expressed proteins (DEPs) in PDCoV-infected IPEC-J2 cells. A total of 78 DEPs, including 23 upregulated and 55 downregulated proteins, were identified at 24 h postinfection. The data are available via ProteomeXchange with identifier PXD019975. To ensure reliability of the proteomics data, two randomly selected DEPs, the downregulated anaphase-promoting"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T1","span":{"begin":43,"end":53},"obj":"http://purl.obolibrary.org/obo/UBERON_0000160"},{"id":"T2","span":{"begin":43,"end":53},"obj":"http://www.ebi.ac.uk/efo/EFO_0000834"},{"id":"T3","span":{"begin":54,"end":64},"obj":"http://purl.obolibrary.org/obo/CL_0000066"},{"id":"T4","span":{"begin":65,"end":70},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T5","span":{"begin":130,"end":132},"obj":"http://purl.obolibrary.org/obo/CL_0000453"},{"id":"T6","span":{"begin":133,"end":135},"obj":"http://purl.obolibrary.org/obo/CLO_0007874"},{"id":"T7","span":{"begin":136,"end":138},"obj":"http://purl.obolibrary.org/obo/CLO_0007874"},{"id":"T8","span":{"begin":266,"end":282},"obj":"http://purl.obolibrary.org/obo/UBERON_0002108"},{"id":"T9","span":{"begin":283,"end":293},"obj":"http://purl.obolibrary.org/obo/CL_0000066"},{"id":"T10","span":{"begin":294,"end":299},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T11","span":{"begin":330,"end":335},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T12","span":{"begin":433,"end":441},"obj":"http://purl.obolibrary.org/obo/CLO_0007225"},{"id":"T13","span":{"begin":501,"end":503},"obj":"http://purl.obolibrary.org/obo/CL_0000453"},{"id":"T14","span":{"begin":504,"end":506},"obj":"http://purl.obolibrary.org/obo/CLO_0007874"},{"id":"T15","span":{"begin":507,"end":509},"obj":"http://purl.obolibrary.org/obo/CLO_0007874"},{"id":"T16","span":{"begin":614,"end":619},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T17","span":{"begin":621,"end":622},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"Quantitative Proteomic Analysis of Porcine Intestinal Epithelial Cells Infected with Porcine Deltacoronavirus Using iTRAQ-Coupled LC-MS/MS\n\nAbstract\nPorcine deltacoronavirus (PDCoV) is an emergent enteropathogenic coronavirus associated with swine diarrhea. Porcine small intestinal epithelial cells (IPEC) are the primary target cells of PDCoV infection in vivo. Here, isobaric tags for relative and absolute quantification (iTRAQ) labeling coupled to liquid chromatography–tandem mass spectrometry (LC-MS/MS) was used to quantitatively identify differentially expressed proteins (DEPs) in PDCoV-infected IPEC-J2 cells. A total of 78 DEPs, including 23 upregulated and 55 downregulated proteins, were identified at 24 h postinfection. The data are available via ProteomeXchange with identifier PXD019975. To ensure reliability of the proteomics data, two randomly selected DEPs, the downregulated anaphase-promoting"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T1","span":{"begin":130,"end":132},"obj":"Chemical"},{"id":"T2","span":{"begin":133,"end":135},"obj":"Chemical"},{"id":"T3","span":{"begin":136,"end":138},"obj":"Chemical"},{"id":"T4","span":{"begin":501,"end":503},"obj":"Chemical"},{"id":"T5","span":{"begin":504,"end":506},"obj":"Chemical"},{"id":"T6","span":{"begin":507,"end":509},"obj":"Chemical"},{"id":"T7","span":{"begin":572,"end":580},"obj":"Chemical"},{"id":"T8","span":{"begin":687,"end":695},"obj":"Chemical"}],"attributes":[{"id":"A1","pred":"chebi_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CHEBI_73582"},{"id":"A2","pred":"chebi_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CHEBI_73613"},{"id":"A3","pred":"chebi_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CHEBI_73613"},{"id":"A4","pred":"chebi_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CHEBI_73582"},{"id":"A5","pred":"chebi_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CHEBI_73613"},{"id":"A6","pred":"chebi_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/CHEBI_73613"},{"id":"A7","pred":"chebi_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A8","pred":"chebi_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"}],"text":"Quantitative Proteomic Analysis of Porcine Intestinal Epithelial Cells Infected with Porcine Deltacoronavirus Using iTRAQ-Coupled LC-MS/MS\n\nAbstract\nPorcine deltacoronavirus (PDCoV) is an emergent enteropathogenic coronavirus associated with swine diarrhea. Porcine small intestinal epithelial cells (IPEC) are the primary target cells of PDCoV infection in vivo. Here, isobaric tags for relative and absolute quantification (iTRAQ) labeling coupled to liquid chromatography–tandem mass spectrometry (LC-MS/MS) was used to quantitatively identify differentially expressed proteins (DEPs) in PDCoV-infected IPEC-J2 cells. A total of 78 DEPs, including 23 upregulated and 55 downregulated proteins, were identified at 24 h postinfection. The data are available via ProteomeXchange with identifier PXD019975. To ensure reliability of the proteomics data, two randomly selected DEPs, the downregulated anaphase-promoting"}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T1","span":{"begin":248,"end":256},"obj":"Phenotype"}],"attributes":[{"id":"A1","pred":"hp_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/HP_0002014"}],"text":"Quantitative Proteomic Analysis of Porcine Intestinal Epithelial Cells Infected with Porcine Deltacoronavirus Using iTRAQ-Coupled LC-MS/MS\n\nAbstract\nPorcine deltacoronavirus (PDCoV) is an emergent enteropathogenic coronavirus associated with swine diarrhea. Porcine small intestinal epithelial cells (IPEC) are the primary target cells of PDCoV infection in vivo. Here, isobaric tags for relative and absolute quantification (iTRAQ) labeling coupled to liquid chromatography–tandem mass spectrometry (LC-MS/MS) was used to quantitatively identify differentially expressed proteins (DEPs) in PDCoV-infected IPEC-J2 cells. A total of 78 DEPs, including 23 upregulated and 55 downregulated proteins, were identified at 24 h postinfection. The data are available via ProteomeXchange with identifier PXD019975. To ensure reliability of the proteomics data, two randomly selected DEPs, the downregulated anaphase-promoting"}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T1","span":{"begin":898,"end":906},"obj":"http://purl.obolibrary.org/obo/GO_0051322"}],"text":"Quantitative Proteomic Analysis of Porcine Intestinal Epithelial Cells Infected with Porcine Deltacoronavirus Using iTRAQ-Coupled LC-MS/MS\n\nAbstract\nPorcine deltacoronavirus (PDCoV) is an emergent enteropathogenic coronavirus associated with swine diarrhea. Porcine small intestinal epithelial cells (IPEC) are the primary target cells of PDCoV infection in vivo. Here, isobaric tags for relative and absolute quantification (iTRAQ) labeling coupled to liquid chromatography–tandem mass spectrometry (LC-MS/MS) was used to quantitatively identify differentially expressed proteins (DEPs) in PDCoV-infected IPEC-J2 cells. A total of 78 DEPs, including 23 upregulated and 55 downregulated proteins, were identified at 24 h postinfection. The data are available via ProteomeXchange with identifier PXD019975. To ensure reliability of the proteomics data, two randomly selected DEPs, the downregulated anaphase-promoting"}

{"project":"LitCovid-sentences","denotations":[{"id":"T1","span":{"begin":0,"end":138},"obj":"Sentence"},{"id":"T2","span":{"begin":140,"end":148},"obj":"Sentence"},{"id":"T3","span":{"begin":149,"end":257},"obj":"Sentence"},{"id":"T4","span":{"begin":258,"end":363},"obj":"Sentence"},{"id":"T5","span":{"begin":364,"end":620},"obj":"Sentence"},{"id":"T6","span":{"begin":621,"end":735},"obj":"Sentence"},{"id":"T7","span":{"begin":736,"end":805},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Quantitative Proteomic Analysis of Porcine Intestinal Epithelial Cells Infected with Porcine Deltacoronavirus Using iTRAQ-Coupled LC-MS/MS\n\nAbstract\nPorcine deltacoronavirus (PDCoV) is an emergent enteropathogenic coronavirus associated with swine diarrhea. Porcine small intestinal epithelial cells (IPEC) are the primary target cells of PDCoV infection in vivo. Here, isobaric tags for relative and absolute quantification (iTRAQ) labeling coupled to liquid chromatography–tandem mass spectrometry (LC-MS/MS) was used to quantitatively identify differentially expressed proteins (DEPs) in PDCoV-infected IPEC-J2 cells. A total of 78 DEPs, including 23 upregulated and 55 downregulated proteins, were identified at 24 h postinfection. The data are available via ProteomeXchange with identifier PXD019975. To ensure reliability of the proteomics data, two randomly selected DEPs, the downregulated anaphase-promoting"}

{"project":"LitCovid-PubTator","denotations":[{"id":"3","span":{"begin":85,"end":109},"obj":"Species"},{"id":"4","span":{"begin":35,"end":42},"obj":"Species"},{"id":"5","span":{"begin":71,"end":79},"obj":"Disease"},{"id":"27","span":{"begin":149,"end":173},"obj":"Species"},{"id":"28","span":{"begin":214,"end":225},"obj":"Species"},{"id":"29","span":{"begin":242,"end":247},"obj":"Species"},{"id":"30","span":{"begin":258,"end":265},"obj":"Species"},{"id":"31","span":{"begin":248,"end":256},"obj":"Disease"},{"id":"32","span":{"begin":345,"end":354},"obj":"Disease"},{"id":"33","span":{"begin":591,"end":605},"obj":"Disease"},{"id":"35","span":{"begin":606,"end":613},"obj":"CellLine"}],"attributes":[{"id":"A3","pred":"tao:has_database_id","subj":"3","obj":"Tax:1586324"},{"id":"A4","pred":"tao:has_database_id","subj":"4","obj":"Tax:28344"},{"id":"A5","pred":"tao:has_database_id","subj":"5","obj":"MESH:D007239"},{"id":"A27","pred":"tao:has_database_id","subj":"27","obj":"Tax:1586324"},{"id":"A28","pred":"tao:has_database_id","subj":"28","obj":"Tax:11118"},{"id":"A29","pred":"tao:has_database_id","subj":"29","obj":"Tax:9823"},{"id":"A30","pred":"tao:has_database_id","subj":"30","obj":"Tax:28344"},{"id":"A31","pred":"tao:has_database_id","subj":"31","obj":"MESH:D003967"},{"id":"A32","pred":"tao:has_database_id","subj":"32","obj":"MESH:D007239"},{"id":"A33","pred":"tao:has_database_id","subj":"33","obj":"MESH:D007239"},{"id":"A35","pred":"tao:has_database_id","subj":"35","obj":"CVCL:2246"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Quantitative Proteomic Analysis of Porcine Intestinal Epithelial Cells Infected with Porcine Deltacoronavirus Using iTRAQ-Coupled LC-MS/MS\n\nAbstract\nPorcine deltacoronavirus (PDCoV) is an emergent enteropathogenic coronavirus associated with swine diarrhea. Porcine small intestinal epithelial cells (IPEC) are the primary target cells of PDCoV infection in vivo. Here, isobaric tags for relative and absolute quantification (iTRAQ) labeling coupled to liquid chromatography–tandem mass spectrometry (LC-MS/MS) was used to quantitatively identify differentially expressed proteins (DEPs) in PDCoV-infected IPEC-J2 cells. A total of 78 DEPs, including 23 upregulated and 55 downregulated proteins, were identified at 24 h postinfection. The data are available via ProteomeXchange with identifier PXD019975. To ensure reliability of the proteomics data, two randomly selected DEPs, the downregulated anaphase-promoting"}