PMC:7605643 / 7921-8666 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7605643","sourcedb":"PMC","sourceid":"7605643","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7605643","text":"Pharmaco-networking of N. sativa constituents\nLiterature mining was done to find the different constituents of N. sativa. Their PubChem IDs (Kim, et al.) were retrieved, and constituents (ligands) were downloaded in .SDF format. QikProp v6.3 (rel 13) was used to perform computational ADME analysis (Schrödinger Release 2020-1: QikProp, Schrödinger, LLC, New York, NY, 2020). ADME stands for Absorption, Distribution, Metabolism and Excretion. It was performed to predict the druggability of the compounds. Further, receptors were predicted for constituents of N. sativa in human system by using Swiss target prediction tool (Gfeller et al., 2014). These receptors were additionally used to analyse their mode of action via interaction analysis.","divisions":[{"label":"title","span":{"begin":0,"end":45}}],"tracks":[{"project":"LitCovid-PD-CLO","denotations":[{"id":"T67","span":{"begin":350,"end":353},"obj":"http://purl.obolibrary.org/obo/CLO_0050167"},{"id":"T68","span":{"begin":365,"end":367},"obj":"http://purl.obolibrary.org/obo/CLO_0009877"},{"id":"T69","span":{"begin":574,"end":579},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"}],"attributes":[{"subj":"T67","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T68","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T69","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T48","span":{"begin":188,"end":195},"obj":"Chemical"},{"id":"T49","span":{"begin":365,"end":367},"obj":"Chemical"}],"attributes":[{"id":"A48","pred":"chebi_id","subj":"T48","obj":"http://purl.obolibrary.org/obo/CHEBI_52214"},{"id":"A49","pred":"chebi_id","subj":"T49","obj":"http://purl.obolibrary.org/obo/CHEBI_73427"},{"subj":"T48","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T49","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T12","span":{"begin":418,"end":428},"obj":"http://purl.obolibrary.org/obo/GO_0008152"},{"id":"T13","span":{"begin":433,"end":442},"obj":"http://purl.obolibrary.org/obo/GO_0007588"}],"attributes":[{"subj":"T12","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T13","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T59","span":{"begin":0,"end":45},"obj":"Sentence"},{"id":"T60","span":{"begin":46,"end":121},"obj":"Sentence"},{"id":"T61","span":{"begin":122,"end":228},"obj":"Sentence"},{"id":"T62","span":{"begin":229,"end":327},"obj":"Sentence"},{"id":"T63","span":{"begin":328,"end":375},"obj":"Sentence"},{"id":"T64","span":{"begin":376,"end":443},"obj":"Sentence"},{"id":"T65","span":{"begin":444,"end":506},"obj":"Sentence"},{"id":"T66","span":{"begin":507,"end":648},"obj":"Sentence"},{"id":"T67","span":{"begin":649,"end":745},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T59","pred":"source","obj":"LitCovid-sentences"},{"subj":"T60","pred":"source","obj":"LitCovid-sentences"},{"subj":"T61","pred":"source","obj":"LitCovid-sentences"},{"subj":"T62","pred":"source","obj":"LitCovid-sentences"},{"subj":"T63","pred":"source","obj":"LitCovid-sentences"},{"subj":"T64","pred":"source","obj":"LitCovid-sentences"},{"subj":"T65","pred":"source","obj":"LitCovid-sentences"},{"subj":"T66","pred":"source","obj":"LitCovid-sentences"},{"subj":"T67","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"193","span":{"begin":23,"end":32},"obj":"Species"},{"id":"198","span":{"begin":111,"end":120},"obj":"Species"},{"id":"199","span":{"begin":561,"end":570},"obj":"Species"},{"id":"200","span":{"begin":574,"end":579},"obj":"Species"},{"id":"201","span":{"begin":376,"end":380},"obj":"Chemical"}],"attributes":[{"id":"A193","pred":"tao:has_database_id","subj":"193","obj":"Tax:555479"},{"id":"A198","pred":"tao:has_database_id","subj":"198","obj":"Tax:555479"},{"id":"A199","pred":"tao:has_database_id","subj":"199","obj":"Tax:555479"},{"id":"A200","pred":"tao:has_database_id","subj":"200","obj":"Tax:9606"},{"subj":"193","pred":"source","obj":"LitCovid-PubTator"},{"subj":"198","pred":"source","obj":"LitCovid-PubTator"},{"subj":"199","pred":"source","obj":"LitCovid-PubTator"},{"subj":"200","pred":"source","obj":"LitCovid-PubTator"},{"subj":"201","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-CLO","color":"#93ecdd","default":true},{"id":"LitCovid-PD-CHEBI","color":"#ecc393"},{"id":"LitCovid-PD-GO-BP","color":"#a993ec"},{"id":"LitCovid-sentences","color":"#96ec93"},{"id":"LitCovid-PubTator","color":"#ec93b1"}]}]}}