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PMC:7605337 / 39117-40490 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T57 151-158 Body_part denotes alanine http://purl.org/sig/ont/fma/fma82749
T58 778-785 Body_part denotes Alanine http://purl.org/sig/ont/fma/fma82749

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T270 224-233 Disease denotes nCOV-2019 http://purl.obolibrary.org/obo/MONDO_0100096
T271 599-608 Disease denotes nCOV-2019 http://purl.obolibrary.org/obo/MONDO_0100096
T272 874-883 Disease denotes nCOV-2019 http://purl.obolibrary.org/obo/MONDO_0100096
T273 888-892 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T246 815-818 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T247 819-820 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T122 136-138 Chemical denotes S3 http://purl.obolibrary.org/obo/CHEBI_29388
T123 151-158 Chemical denotes alanine http://purl.obolibrary.org/obo/CHEBI_16449
T124 778-785 Chemical denotes Alanine http://purl.obolibrary.org/obo/CHEBI_16449

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T265 0-139 Sentence denotes H-bond analysis was also performed for the mutant systems and the results for H-bonds with more than 40% consistency are shown in Table S3.
T266 140-247 Sentence denotes Few of the alanine substitutions increase the number of interfacial H-bonds between nCOV-2019 RBD and ACE2.
T267 248-350 Sentence denotes Interestingly, the ala-substitution at Y489A increased the number of H-bonds in the wild-type complex.
T268 351-527 Sentence denotes Mutation in some of the residues having consistent H-bonds in the wild type complex such as Q498A and Q493A, stunningly maintain the number of H-bonds in the wild-type complex.
T269 528-695 Sentence denotes This indicates that the plasticity in the network of H-bonds in RBM of nCOV-2019 can reshape the network and strengthen other H-bonds upon mutation in these locations.
T270 696-777 Sentence denotes However, few mutations decrease the number of H-bonds from the wild-type complex.
T271 778-897 Sentence denotes Alanine substitution at residue G502 has a significant effect on the network of H-bonds between nCOV-2019 and SARS-COV.
T272 898-989 Sentence denotes This residue locates at the end of L4 loop near two other important residues Q498 and T500.
T273 990-1041 Sentence denotes This mutation breaks the H-bonds at these residues.
T274 1042-1142 Sentence denotes Mutation K417A decreases the number of H-bonds to only 5 where the H-bond at residue Q498 is broken.
T275 1143-1277 Sentence denotes This indicates the delicate nature of the H-bond from residue Q498 which can easily be broken upon ala-substitution at other residues.
T276 1278-1373 Sentence denotes Furthermore, mutation N487 also decreases the number of H-bonds by breaking the H-bond at Q498.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
976 242-246 Gene denotes ACE2 Gene:59272
977 224-228 Species denotes nCOV Tax:2697049
978 599-603 Species denotes nCOV Tax:2697049
979 874-878 Species denotes nCOV Tax:2697049
980 888-896 Species denotes SARS-COV Tax:694009
981 151-158 Chemical denotes alanine MESH:D000409
982 267-270 Chemical denotes ala MESH:D000409
983 778-785 Chemical denotes Alanine MESH:D000409
984 810-814 Chemical denotes G502
985 1127-1131 Chemical denotes Q498
986 1205-1209 Chemical denotes Q498
987 1242-1245 Chemical denotes ala MESH:D000409