PMC:7605337 / 39117-40490
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T57 | 151-158 | Body_part | denotes | alanine | http://purl.org/sig/ont/fma/fma82749 |
T58 | 778-785 | Body_part | denotes | Alanine | http://purl.org/sig/ont/fma/fma82749 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T270 | 224-233 | Disease | denotes | nCOV-2019 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T271 | 599-608 | Disease | denotes | nCOV-2019 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T272 | 874-883 | Disease | denotes | nCOV-2019 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T273 | 888-892 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T246 | 815-818 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T247 | 819-820 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T122 | 136-138 | Chemical | denotes | S3 | http://purl.obolibrary.org/obo/CHEBI_29388 |
T123 | 151-158 | Chemical | denotes | alanine | http://purl.obolibrary.org/obo/CHEBI_16449 |
T124 | 778-785 | Chemical | denotes | Alanine | http://purl.obolibrary.org/obo/CHEBI_16449 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T265 | 0-139 | Sentence | denotes | H-bond analysis was also performed for the mutant systems and the results for H-bonds with more than 40% consistency are shown in Table S3. |
T266 | 140-247 | Sentence | denotes | Few of the alanine substitutions increase the number of interfacial H-bonds between nCOV-2019 RBD and ACE2. |
T267 | 248-350 | Sentence | denotes | Interestingly, the ala-substitution at Y489A increased the number of H-bonds in the wild-type complex. |
T268 | 351-527 | Sentence | denotes | Mutation in some of the residues having consistent H-bonds in the wild type complex such as Q498A and Q493A, stunningly maintain the number of H-bonds in the wild-type complex. |
T269 | 528-695 | Sentence | denotes | This indicates that the plasticity in the network of H-bonds in RBM of nCOV-2019 can reshape the network and strengthen other H-bonds upon mutation in these locations. |
T270 | 696-777 | Sentence | denotes | However, few mutations decrease the number of H-bonds from the wild-type complex. |
T271 | 778-897 | Sentence | denotes | Alanine substitution at residue G502 has a significant effect on the network of H-bonds between nCOV-2019 and SARS-COV. |
T272 | 898-989 | Sentence | denotes | This residue locates at the end of L4 loop near two other important residues Q498 and T500. |
T273 | 990-1041 | Sentence | denotes | This mutation breaks the H-bonds at these residues. |
T274 | 1042-1142 | Sentence | denotes | Mutation K417A decreases the number of H-bonds to only 5 where the H-bond at residue Q498 is broken. |
T275 | 1143-1277 | Sentence | denotes | This indicates the delicate nature of the H-bond from residue Q498 which can easily be broken upon ala-substitution at other residues. |
T276 | 1278-1373 | Sentence | denotes | Furthermore, mutation N487 also decreases the number of H-bonds by breaking the H-bond at Q498. |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
976 | 242-246 | Gene | denotes | ACE2 | Gene:59272 |
977 | 224-228 | Species | denotes | nCOV | Tax:2697049 |
978 | 599-603 | Species | denotes | nCOV | Tax:2697049 |
979 | 874-878 | Species | denotes | nCOV | Tax:2697049 |
980 | 888-896 | Species | denotes | SARS-COV | Tax:694009 |
981 | 151-158 | Chemical | denotes | alanine | MESH:D000409 |
982 | 267-270 | Chemical | denotes | ala | MESH:D000409 |
983 | 778-785 | Chemical | denotes | Alanine | MESH:D000409 |
984 | 810-814 | Chemical | denotes | G502 | |
985 | 1127-1131 | Chemical | denotes | Q498 | |
986 | 1205-1209 | Chemical | denotes | Q498 | |
987 | 1242-1245 | Chemical | denotes | ala | MESH:D000409 |