PMC:7605337 / 18007-18568
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T48 | 211-219 | Body_part | denotes | backbone | http://purl.org/sig/ont/fma/fma13478 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T111 | 302-306 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T112 | 315-324 | Disease | denotes | nCOV-2019 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T114 | 232-233 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T115 | 406-407 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T116 | 412-414 | http://purl.obolibrary.org/obo/CLO_0008491 | denotes | ps |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T69 | 223-228 | Chemical | denotes | atoms | http://purl.obolibrary.org/obo/CHEBI_33250 |
| T70 | 430-438 | Chemical | denotes | Hydrogen | http://purl.obolibrary.org/obo/CHEBI_18276 |
| T71 | 534-539 | Chemical | denotes | donor | http://purl.obolibrary.org/obo/CHEBI_17891 |
| T72 | 544-552 | Chemical | denotes | acceptor | http://purl.obolibrary.org/obo/CHEBI_15339 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T91 | 0-251 | Sentence | denotes | The dynamic cross-correlation maps (DCCM) were obtained using the MD_TASK package to identify the correlated motions of RBD residues.46 In DCCM, the cross-correlation matrix Cij is obtained from displacement of backbone Cα atoms at a time interval Δt. |
| T92 | 252-429 | Sentence | denotes | The DCCM was constructed using the last 400 ns of SARS-COV and nCOV-2019 and the extended mutant systems and last 200 ns of all other mutant systems with a 100 ps time interval. |
| T93 | 430-561 | Sentence | denotes | Hydrogen bonds were analyzed in VMD where the distance cutoff was 3.2Å and the angle cutoff between the donor and acceptor was 30°. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 434 | 302-310 | Species | denotes | SARS-COV | Tax:694009 |
| 435 | 315-319 | Species | denotes | nCOV | Tax:2697049 |
| 436 | 139-143 | Chemical | denotes | DCCM | |
| 437 | 430-438 | Chemical | denotes | Hydrogen | MESH:D006859 |
| 438 | 211-228 | Disease | denotes | backbone Cα atoms | |
| 439 | 462-465 | Disease | denotes | VMD |