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PMC:7600245 / 38469-42003 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T148 323-340 Body_part denotes chromosome region http://purl.org/sig/ont/fma/fma84688
T149 323-333 Body_part denotes chromosome http://purl.org/sig/ont/fma/fma67093
T150 362-369 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T151 458-466 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T152 474-483 Body_part denotes cytoplasm http://purl.org/sig/ont/fma/fma66835
T153 525-530 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T154 650-655 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T155 815-823 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T156 849-857 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T157 910-922 Body_part denotes cell nucleus http://purl.org/sig/ont/fma/fma63840
T158 910-914 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T159 930-939 Body_part denotes cytoplasm http://purl.org/sig/ont/fma/fma66835
T160 992-1000 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T161 1070-1074 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T162 1113-1118 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T163 1148-1153 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T164 1275-1283 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T165 1313-1317 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T166 1325-1334 Body_part denotes cytoplasm http://purl.org/sig/ont/fma/fma66835
T167 1615-1618 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T168 1881-1889 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T169 2335-2340 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498
T170 2532-2541 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T171 2709-2717 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T172 2784-2794 Body_part denotes macrophage http://purl.org/sig/ont/fma/fma63261
T173 2817-2828 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T174 2841-2858 Body_part denotes peritoneal cavity http://purl.org/sig/ont/fma/fma14704
T175 2885-2903 Body_part denotes lipopolysaccharide http://purl.org/sig/ont/fma/fma82785
T176 2912-2916 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T6 2335-2340 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062
T7 2841-2858 Body_part denotes peritoneal cavity http://purl.obolibrary.org/obo/UBERON_0001179
T8 2912-2916 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T141 245-261 Disease denotes multiple myeloma http://purl.obolibrary.org/obo/MONDO_0009693
T142 254-261 Disease denotes myeloma http://purl.obolibrary.org/obo/MONDO_0005170
T143 518-524 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T144 596-601 Disease denotes tumor http://purl.obolibrary.org/obo/MONDO_0005070
T145 643-649 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T146 832-837 Disease denotes tumor http://purl.obolibrary.org/obo/MONDO_0005070
T147 975-980 Disease denotes tumor http://purl.obolibrary.org/obo/MONDO_0005070
T148 1106-1112 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T149 1667-1676 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T150 1804-1812 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T151 1872-1880 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T152 2917-2923 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T153 2943-2978 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T154 2949-2978 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T155 3083-3091 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T156 3243-3251 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T157 3482-3490 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T349 525-530 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T350 650-655 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T351 910-914 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T352 1070-1074 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T353 1113-1118 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T354 1148-1153 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T355 1214-1217 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T356 1238-1239 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T357 1313-1317 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T358 1366-1376 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T359 1565-1573 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T360 1596-1603 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T361 1619-1626 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T362 1657-1662 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T363 1677-1682 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T364 1723-1726 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T365 1775-1776 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T366 1787-1795 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T367 2045-2048 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T368 2335-2340 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T369 2447-2455 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T370 2475-2485 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T371 2502-2511 http://purl.obolibrary.org/obo/SO_0000418 denotes signaling
T372 2545-2546 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T373 2582-2583 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T374 2584-2589 http://purl.obolibrary.org/obo/CLO_0007836 denotes mouse
T375 2646-2647 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T376 2841-2858 http://purl.obolibrary.org/obo/UBERON_0001179 denotes peritoneal cavity
T377 2912-2916 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T378 2912-2916 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T379 2980-2983 http://purl.obolibrary.org/obo/CLO_0054061 denotes 132
T380 3125-3133 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T381 3307-3315 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T583 49-64 Chemical denotes trifluoromethyl http://purl.obolibrary.org/obo/CHEBI_50127
T584 65-71 Chemical denotes phenyl http://purl.obolibrary.org/obo/CHEBI_30396
T585 72-80 Chemical denotes triazole http://purl.obolibrary.org/obo/CHEBI_38597
T586 87-101 Chemical denotes antineoplastic http://purl.obolibrary.org/obo/CHEBI_35610
T587 108-116 Chemical denotes molecule http://purl.obolibrary.org/obo/CHEBI_25367
T588 204-217 Chemical denotes dexamethasone http://purl.obolibrary.org/obo/CHEBI_41879
T589 310-319 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T590 362-369 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T591 458-466 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T592 815-823 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T593 849-857 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T594 915-922 Chemical denotes nucleus http://purl.obolibrary.org/obo/CHEBI_33252
T595 992-1000 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T596 1008-1015 Chemical denotes nucleus http://purl.obolibrary.org/obo/CHEBI_33252
T597 1275-1283 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T598 1293-1300 Chemical denotes nucleus http://purl.obolibrary.org/obo/CHEBI_33252
T599 1435-1444 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T600 1474-1483 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T601 1539-1549 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T602 1881-1889 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T603 1934-1941 Chemical denotes nucleus http://purl.obolibrary.org/obo/CHEBI_33252
T604 2132-2143 Chemical denotes antioxidant http://purl.obolibrary.org/obo/CHEBI_22586
T605 2396-2406 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T606 2731-2733 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T608 2885-2903 Chemical denotes lipopolysaccharide http://purl.obolibrary.org/obo/CHEBI_16412

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T51 791-805 http://purl.obolibrary.org/obo/GO_0051168 denotes nuclear export
T52 832-848 http://purl.obolibrary.org/obo/GO_0051726 denotes tumor suppressor
T53 975-991 http://purl.obolibrary.org/obo/GO_0051726 denotes tumor suppressor
T54 1070-1087 http://purl.obolibrary.org/obo/GO_0007050 denotes cell cycle arrest
T55 1070-1080 http://purl.obolibrary.org/obo/GO_0007049 denotes cell cycle
T56 1093-1102 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T57 1093-1102 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis
T58 1397-1418 http://purl.obolibrary.org/obo/GO_0000981 denotes transcription factors
T59 1397-1410 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T60 1992-2006 http://purl.obolibrary.org/obo/GO_0019068 denotes viral assembly
T61 2086-2100 http://purl.obolibrary.org/obo/GO_0051168 denotes nuclear export
T62 2183-2204 http://purl.obolibrary.org/obo/GO_0000981 denotes transcription factors
T63 2183-2196 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T64 2294-2316 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammatory responses
T65 2502-2511 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T66 2709-2727 http://purl.obolibrary.org/obo/GO_0001816 denotes cytokine secretion
T67 2718-2727 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T18 245-261 Phenotype denotes multiple myeloma http://purl.obolibrary.org/obo/HP_0006775
T19 518-524 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T20 596-601 Phenotype denotes tumor http://purl.obolibrary.org/obo/HP_0002664
T21 643-649 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T22 832-837 Phenotype denotes tumor http://purl.obolibrary.org/obo/HP_0002664
T23 975-980 Phenotype denotes tumor http://purl.obolibrary.org/obo/HP_0002664
T24 1106-1112 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T25 2599-2605 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T26 2949-2969 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T288 0-4 Sentence denotes 4.1.
T289 5-31 Sentence denotes Selinexor (Xpovio, KPT330)
T290 32-128 Sentence denotes Selinexor is bis(trifluoromethyl)phenyl-triazole-based antineoplastic small molecule (Figure 7).
T291 129-170 Sentence denotes It was first approved in 2019 by the U.S.
T292 171-262 Sentence denotes FDA and is being prescribed with dexamethasone for refractory or relapsed multiple myeloma.
T293 263-404 Sentence denotes Selinexor is an orally bioavailable, selective inhibitor of chromosome region maintenance 1 (CRM1) protein (also known as exportin 1 (XPO1)).
T294 405-531 Sentence denotes CRM1 is the main export factor that shuttles nuclear proteins to the cytoplasm and is typically overexpressed in cancer cells.
T295 532-656 Sentence denotes Its selective inhibition can assist in restoring the endogenous tumor-suppressing processes so as to eliminate cancer cells.
T296 657-940 Sentence denotes Specifically, selinexor selectively and irreversibly modifies the essential Cys528 residue in CRM1, and thus, it blocks CRM1-mediated nuclear export of cargo proteins such as tumor suppressor proteins (p21, p53, pRB, BRCA1/2, FOXO, and others) from the cell nucleus to the cytoplasm.
T297 941-1016 Sentence denotes This leads to the accumulation of tumor suppressor proteins in the nucleus.
T298 1017-1168 Sentence denotes It also results in decreased levels of oncoproteins, cell cycle arrest, and apoptosis of cancer cells without affecting the normal cells [119,120,121].
T299 1169-1419 Sentence denotes Considering the current viral pandemic, CRM1 has been put forward as a facilitator of the export of viral proteins from the nucleus of the host cell to the cytoplasm as well as an amplifier of the activities of pro-inflammatory transcription factors.
T300 1420-1524 Sentence denotes Thus, the CRM1 inhibitor selinexor may exert relevant antiviral and anti-inflammatory effects [122,123].
T301 1525-1693 Sentence denotes In fact, CRM1 inhibitors have exhibited activity against >20 different viruses, including RNA viruses such as respiratory syncytial virus and influenza virus [122,123].
T302 1694-1821 Sentence denotes Furthermore, CRM1 inhibition has also been identified in in vitro assays to have a potential activity against SARS-CoV-2 [124].
T303 1822-1942 Sentence denotes CRM1 was found to contribute to exporting several SARS-CoV proteins, such as S, N, 9b, Orf3 and Orf6 out of the nucleus.
T304 1943-2029 Sentence denotes Thus, CRM1 inhibition is expected to inhibit the viral assembly [125,126,127,128,129].
T305 2030-2211 Sentence denotes Moreover, CRM1 has also been found to contribute to the nuclear export and functional inactivation of antioxidant, anti-inflammatory, and cytoprotective transcription factors [130].
T306 2212-2354 Sentence denotes High levels of CRM1 are found in multiple inflammatory conditions and may magnify inflammatory responses leading to severe organ damage [131].
T307 2355-2565 Sentence denotes In this direction, selinexor and similar inhibitors have exhibited potent anti-inflammatory activity by suppressing the activation of NFkB and p38 signaling, leading to reduced cytokines in a variety of models.
T308 2566-2673 Sentence denotes For example, in a mouse model of sepsis, selinexor increased survival following a lethal dose of endotoxin.
T309 2674-2859 Sentence denotes Selinexor reduced the inflammatory cytokine secretion of IL-6, TNF-α, and HMGB1 while reducing the numbers of macrophage and polymorphonuclear neutrophils in the mice peritoneal cavity.
T310 2860-2985 Sentence denotes Selinexor also mitigated lipopolysaccharide-induced lung injury that is similar to acute respiratory distress syndrome [132].
T311 2986-3101 Sentence denotes Currently, selinexor is being evaluated in at least two phase 2 randomized trials in the U.S. in COVID-19 patients.
T312 3102-3534 Sentence denotes One is to evaluate the activity, safety and reduction in mortality of two regimens of low-dose selinexor in patients with moderate or severe COVID-19 (NCT04355676, n = 80) and the other is to evaluate the activity of low-dose selinexor and its effect on the clinical recovery, viral load, length of hospitalization, and rate of morbidity and mortality in participants with severe COVID-19 compared to placebo (NCT04349098, n = 230).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1164 323-354 Gene denotes chromosome region maintenance 1 Gene:7514
1165 356-360 Gene denotes CRM1 Gene:7514
1166 385-395 Gene denotes exportin 1 Gene:7514
1167 397-401 Gene denotes XPO1 Gene:7514
1168 405-409 Gene denotes CRM1 Gene:7514
1169 751-755 Gene denotes CRM1 Gene:7514
1170 777-781 Gene denotes CRM1 Gene:7514
1171 859-862 Gene denotes p21 Gene:644914
1172 864-867 Gene denotes p53 Gene:7157
1173 869-872 Gene denotes pRB Gene:5925
1174 874-881 Gene denotes BRCA1/2 Gene:672
1175 45-80 Chemical denotes bis(trifluoromethyl)phenyl-triazole
1176 204-217 Chemical denotes dexamethasone MESH:D003907
1177 733-739 Chemical denotes Cys528
1178 245-261 Disease denotes multiple myeloma MESH:D009101
1179 518-524 Disease denotes cancer MESH:D009369
1180 596-601 Disease denotes tumor MESH:D009369
1181 643-649 Disease denotes cancer MESH:D009369
1182 832-837 Disease denotes tumor MESH:D009369
1183 975-980 Disease denotes tumor MESH:D009369
1184 1081-1087 Disease denotes arrest MESH:D006323
1185 1106-1112 Disease denotes cancer MESH:D009369
1213 1209-1213 Gene denotes CRM1 Gene:7514
1214 1430-1434 Gene denotes CRM1 Gene:7514
1215 1534-1538 Gene denotes CRM1 Gene:7514
1216 1707-1711 Gene denotes CRM1 Gene:7514
1217 1822-1826 Gene denotes CRM1 Gene:7514
1218 1909-1913 Gene denotes Orf3 Gene:136991
1219 1949-1953 Gene denotes CRM1 Gene:7514
1220 2040-2044 Gene denotes CRM1 Gene:7514
1221 2227-2231 Gene denotes CRM1 Gene:7514
1222 2498-2501 Gene denotes p38 Gene:1432
1223 2731-2735 Gene denotes IL-6 Gene:16193
1224 2737-2742 Gene denotes TNF-α Gene:21926
1225 2748-2753 Gene denotes HMGB1 Gene:15289
1226 1635-1662 Species denotes respiratory syncytial virus Tax:12814
1227 1667-1682 Species denotes influenza virus Tax:11308
1228 1804-1814 Species denotes SARS-CoV-2 Tax:2697049
1229 1872-1880 Species denotes SARS-CoV Tax:694009
1230 2584-2589 Species denotes mouse Tax:10090
1231 2836-2840 Species denotes mice Tax:10090
1232 1445-1454 Chemical denotes selinexor MESH:C585161
1233 2374-2383 Chemical denotes selinexor MESH:C585161
1234 2607-2616 Chemical denotes selinexor MESH:C585161
1235 2860-2869 Chemical denotes Selinexor MESH:C585161
1236 2885-2903 Chemical denotes lipopolysaccharide MESH:D008070
1237 2599-2605 Disease denotes sepsis MESH:D018805
1238 2912-2923 Disease denotes lung injury MESH:D055370
1239 2943-2978 Disease denotes acute respiratory distress syndrome MESH:D012128
1250 3092-3100 Species denotes patients Tax:9606
1251 3210-3218 Species denotes patients Tax:9606
1252 3457-3469 Species denotes participants Tax:9606
1253 3197-3206 Chemical denotes selinexor MESH:C585161
1254 3328-3337 Chemical denotes selinexor MESH:C585161
1255 3083-3091 Disease denotes COVID-19 MESH:C000657245
1256 3159-3168 Disease denotes mortality MESH:D003643
1257 3243-3251 Disease denotes COVID-19 MESH:C000657245
1258 3444-3453 Disease denotes mortality MESH:D003643
1259 3482-3490 Disease denotes COVID-19 MESH:C000657245