> top > docs > PMC:7597510 > spans > 4413-7487 > annotations

PMC:7597510 / 4413-7487 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T7 49-56 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose
T8 393-396 https://glytoucan.org/Structures/Glycans/G46613JI denotes GM1
T9 393-396 https://glytoucan.org/Structures/Glycans/G48558GR denotes GM1
T10 398-401 https://glytoucan.org/Structures/Glycans/G61168WC denotes GM2
T11 398-401 https://glytoucan.org/Structures/Glycans/G79389NT denotes GM2
T12 403-407 https://glytoucan.org/Structures/Glycans/G46677TE denotes GD1a
T13 403-407 https://glytoucan.org/Structures/Glycans/G69277LC denotes GD1a
T14 409-413 https://glytoucan.org/Structures/Glycans/G37184KW denotes GD1b
T15 409-413 https://glytoucan.org/Structures/Glycans/G97612UN denotes GD1b
T16 415-418 https://glytoucan.org/Structures/Glycans/G81928IQ denotes GD3
T17 415-418 https://glytoucan.org/Structures/Glycans/G98544DH denotes GD3
T18 420-431 https://glytoucan.org/Structures/Glycans/G92175CL denotes GalNAc-GD1a
T19 433-437 https://glytoucan.org/Structures/Glycans/G68110IF denotes GT1a
T20 433-437 https://glytoucan.org/Structures/Glycans/G93468NI denotes GT1a
T21 439-443 https://glytoucan.org/Structures/Glycans/G05952XV denotes GT1b
T22 439-443 https://glytoucan.org/Structures/Glycans/G40183QN denotes GT1b
T23 445-449 https://glytoucan.org/Structures/Glycans/G17077FL denotes GQ1b
T24 445-449 https://glytoucan.org/Structures/Glycans/G18625KA denotes GQ1b
T25 459-469 https://glytoucan.org/Structures/Glycans/G00407UJ denotes asialo-GM1
T26 459-469 https://glytoucan.org/Structures/Glycans/G21856LC denotes asialo-GM1

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T22 15-20 Body_part denotes Blood http://purl.org/sig/ont/fma/fma9670
T23 43-48 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T24 49-56 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743
T25 94-102 Body_part denotes collagen http://purl.org/sig/ont/fma/fma63891
T26 112-119 Body_part denotes thyroid http://purl.org/sig/ont/fma/fma9603
T27 154-173 Body_part denotes Cerebrospinal fluid http://purl.org/sig/ont/fma/fma20935
T28 175-178 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T29 257-264 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T30 276-280 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T31 349-360 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816
T32 472-483 Body_part denotes Ganglioside http://purl.org/sig/ont/fma/fma82816
T33 585-588 Body_part denotes CSF http://purl.org/sig/ont/fma/fma20935
T34 789-795 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T35 857-870 Body_part denotes tibial nerves http://purl.org/sig/ont/fma/fma19035
T36 1042-1047 Body_part denotes Nerve http://purl.org/sig/ont/fma/fma65132
T37 1071-1076 Body_part denotes nerve http://purl.org/sig/ont/fma/fma65132
T38 1094-1099 Body_part denotes Nerve http://purl.org/sig/ont/fma/fma65132
T39 1363-1368 Body_part denotes Wrist http://purl.org/sig/ont/fma/fma24922
T40 1468-1473 Body_part denotes Elbow http://purl.org/sig/ont/fma/fma24901
T41 1474-1479 Body_part denotes wrist http://purl.org/sig/ont/fma/fma24922
T42 1511-1516 Body_part denotes Wrist http://purl.org/sig/ont/fma/fma24922
T43 1617-1622 Body_part denotes Elbow http://purl.org/sig/ont/fma/fma24901
T44 1623-1628 Body_part denotes wrist http://purl.org/sig/ont/fma/fma24922
T45 1662-1667 Body_part denotes Wrist http://purl.org/sig/ont/fma/fma24922
T46 1743-1748 Body_part denotes Elbow http://purl.org/sig/ont/fma/fma24901
T47 1749-1754 Body_part denotes wrist http://purl.org/sig/ont/fma/fma24922
T48 1898-1902 Body_part denotes Knee http://purl.org/sig/ont/fma/fma24974
T49 1950-1955 Body_part denotes Ankle http://purl.org/sig/ont/fma/fma9665
T50 2036-2042 Body_part denotes fibula http://purl.org/sig/ont/fma/fma24479
T51 2043-2048 Body_part denotes ankle http://purl.org/sig/ont/fma/fma9665
T52 2078-2083 Body_part denotes nerve http://purl.org/sig/ont/fma/fma65132
T53 2101-2106 Body_part denotes Nerve http://purl.org/sig/ont/fma/fma65132
T54 2298-2303 Body_part denotes Wrist http://purl.org/sig/ont/fma/fma24922
T55 2374-2379 Body_part denotes Elbow http://purl.org/sig/ont/fma/fma24901
T56 2380-2385 Body_part denotes wrist http://purl.org/sig/ont/fma/fma24922
T57 2441-2446 Body_part denotes Wrist http://purl.org/sig/ont/fma/fma24922
T58 2521-2526 Body_part denotes Elbow http://purl.org/sig/ont/fma/fma24901
T59 2527-2532 Body_part denotes wrist http://purl.org/sig/ont/fma/fma24922
T60 2586-2591 Body_part denotes Wrist http://purl.org/sig/ont/fma/fma24922
T61 2665-2670 Body_part denotes Elbow http://purl.org/sig/ont/fma/fma24901
T62 2671-2676 Body_part denotes wrist http://purl.org/sig/ont/fma/fma24922
T63 2777-2782 Body_part denotes Ankle http://purl.org/sig/ont/fma/fma9665
T64 2860-2882 Body_part denotes abductor digiti minimi http://purl.org/sig/ont/fma/fma37451
T65 2889-2913 Body_part denotes abductor pollicis brevis http://purl.org/sig/ont/fma/fma37373
T66 2967-2992 Body_part denotes extensor digitorum brevis http://purl.org/sig/ont/fma/fma51140
T67 2999-3015 Body_part denotes extensor indicis http://purl.org/sig/ont/fma/fma38524
T68 3031-3053 Body_part denotes flexor hallucis brevis http://purl.org/sig/ont/fma/fma37449

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T7 15-20 Body_part denotes Blood http://purl.obolibrary.org/obo/UBERON_0000178
T8 43-48 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T9 112-119 Body_part denotes thyroid http://purl.obolibrary.org/obo/UBERON_0002046
T10 154-173 Body_part denotes Cerebrospinal fluid http://purl.obolibrary.org/obo/UBERON_0001359
T11 857-870 Body_part denotes tibial nerves http://purl.obolibrary.org/obo/UBERON_0001323
T12 1042-1047 Body_part denotes Nerve http://purl.obolibrary.org/obo/UBERON_0001021
T13 1071-1076 Body_part denotes nerve http://purl.obolibrary.org/obo/UBERON_0001021
T14 1094-1099 Body_part denotes Nerve http://purl.obolibrary.org/obo/UBERON_0001021
T15 1468-1473 Body_part denotes Elbow http://purl.obolibrary.org/obo/UBERON_0001461
T16 1617-1622 Body_part denotes Elbow http://purl.obolibrary.org/obo/UBERON_0001461
T17 1743-1748 Body_part denotes Elbow http://purl.obolibrary.org/obo/UBERON_0001461
T18 1898-1902 Body_part denotes Knee http://purl.obolibrary.org/obo/UBERON_0001465
T19 2036-2042 Body_part denotes fibula http://purl.obolibrary.org/obo/UBERON_0001446
T20 2070-2083 Body_part denotes Sensory nerve http://purl.obolibrary.org/obo/UBERON_0001027
T21 2078-2083 Body_part denotes nerve http://purl.obolibrary.org/obo/UBERON_0001021
T22 2101-2106 Body_part denotes Nerve http://purl.obolibrary.org/obo/UBERON_0001021
T23 2374-2379 Body_part denotes Elbow http://purl.obolibrary.org/obo/UBERON_0001461
T24 2521-2526 Body_part denotes Elbow http://purl.obolibrary.org/obo/UBERON_0001461
T25 2665-2670 Body_part denotes Elbow http://purl.obolibrary.org/obo/UBERON_0001461

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T59 94-110 Disease denotes collagen disease http://purl.obolibrary.org/obo/MONDO_0005554
T60 112-127 Disease denotes thyroid disease http://purl.obolibrary.org/obo/MONDO_0003240
T61 454-457 Disease denotes GA1 http://purl.obolibrary.org/obo/MONDO_0009281
T62 608-616 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T63 971-977 Disease denotes asthma http://purl.obolibrary.org/obo/MONDO_0004979
T64 1517-1520 Disease denotes ADM http://purl.obolibrary.org/obo/MONDO_0043317
T65 2855-2858 Disease denotes ADM http://purl.obolibrary.org/obo/MONDO_0043317

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T40 15-20 http://purl.obolibrary.org/obo/UBERON_0000178 denotes Blood
T41 15-20 http://www.ebi.ac.uk/efo/EFO_0000296 denotes Blood
T42 21-26 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T43 43-48 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T44 43-48 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T45 94-102 http://purl.obolibrary.org/obo/CHEBI_3815 denotes collagen
T46 276-280 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T47 293-298 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T48 398-401 http://purl.obolibrary.org/obo/CLO_0003535 denotes GM2
T49 565-566 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T50 597-603 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T51 789-795 http://purl.obolibrary.org/obo/UBERON_0001630 denotes muscle
T52 789-795 http://purl.obolibrary.org/obo/UBERON_0005090 denotes muscle
T53 789-795 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscle
T54 789-795 http://www.ebi.ac.uk/efo/EFO_0001949 denotes muscle
T55 864-870 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerves
T56 958-959 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T57 1015-1016 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T58 1042-1047 http://purl.obolibrary.org/obo/UBERON_0001021 denotes Nerve
T59 1071-1076 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerve
T60 1094-1099 http://purl.obolibrary.org/obo/UBERON_0001021 denotes Nerve
T61 1117-1119 http://purl.obolibrary.org/obo/CLO_0007874 denotes ms
T62 1132-1135 http://purl.obolibrary.org/obo/CLO_0007874 denotes m/s
T63 1178-1180 http://purl.obolibrary.org/obo/CLO_0007874 denotes ms
T64 1458-1460 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T65 2078-2083 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerve
T66 2101-2106 http://purl.obolibrary.org/obo/UBERON_0001021 denotes Nerve
T67 2124-2126 http://purl.obolibrary.org/obo/CLO_0007874 denotes ms
T68 2139-2142 http://purl.obolibrary.org/obo/CLO_0007874 denotes m/s
T69 2332-2334 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T70 2479-2481 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T20 49-56 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167
T22 131-138 Chemical denotes vitamin http://purl.obolibrary.org/obo/CHEBI_33229
T23 257-264 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T24 349-360 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T25 361-369 Chemical denotes antigens http://purl.obolibrary.org/obo/CHEBI_59132
T26 393-396 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110
T29 398-401 Chemical denotes GM2 http://purl.obolibrary.org/obo/CHEBI_141420|http://purl.obolibrary.org/obo/CHEBI_51013|http://purl.obolibrary.org/obo/CHEBI_60327|http://purl.obolibrary.org/obo/CHEBI_89635
T33 403-407 Chemical denotes GD1a http://purl.obolibrary.org/obo/CHEBI_18163|http://purl.obolibrary.org/obo/CHEBI_82607
T35 409-413 Chemical denotes GD1b http://purl.obolibrary.org/obo/CHEBI_28175
T36 415-418 Chemical denotes GD3 http://purl.obolibrary.org/obo/CHEBI_28424|http://purl.obolibrary.org/obo/CHEBI_89636
T38 420-431 Chemical denotes GalNAc-GD1a http://purl.obolibrary.org/obo/CHEBI_59228
T39 420-426 Chemical denotes GalNAc http://purl.obolibrary.org/obo/CHEBI_28037|http://purl.obolibrary.org/obo/CHEBI_28800
T41 427-431 Chemical denotes GD1a http://purl.obolibrary.org/obo/CHEBI_18163|http://purl.obolibrary.org/obo/CHEBI_82607
T43 433-437 Chemical denotes GT1a http://purl.obolibrary.org/obo/CHEBI_27691
T44 439-443 Chemical denotes GT1b http://purl.obolibrary.org/obo/CHEBI_28058
T45 445-449 Chemical denotes GQ1b http://purl.obolibrary.org/obo/CHEBI_27515
T46 454-457 Chemical denotes GA1 http://purl.obolibrary.org/obo/CHEBI_27717|http://purl.obolibrary.org/obo/CHEBI_27938
T48 466-469 Chemical denotes GM1 http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110
T51 472-483 Chemical denotes Ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T52 525-533 Chemical denotes antigens http://purl.obolibrary.org/obo/CHEBI_59132
T53 1122-1130 Chemical denotes Velocity http://purl.obolibrary.org/obo/CHEBI_145500
T54 1956-1959 Chemical denotes EDB http://purl.obolibrary.org/obo/CHEBI_28534
T55 2129-2137 Chemical denotes Velocity http://purl.obolibrary.org/obo/CHEBI_145500
T56 2962-2965 Chemical denotes EDB http://purl.obolibrary.org/obo/CHEBI_28534

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
127 415-418 Gene denotes GD3 Gene:117189
128 608-618 Species denotes SARS-CoV-2 Tax:2697049
129 642-649 Species denotes patient Tax:9606
130 946-953 Species denotes patient Tax:9606
131 49-56 Chemical denotes glucose MESH:D005947
132 349-360 Chemical denotes ganglioside MESH:D005732
133 472-483 Chemical denotes Ganglioside MESH:D005732
134 94-110 Disease denotes collagen disease MESH:D003095
135 112-127 Disease denotes thyroid disease MESH:D013959
136 131-152 Disease denotes vitamin abnormalities MESH:D014802
137 971-977 Disease denotes asthma MESH:D001249
139 2686-2698 Species denotes L  Malleolus Tax:273487
142 2884-2887 Gene denotes APB Gene:6051
143 3031-3046 Disease denotes flexor hallucis MESH:D052582

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T14 112-127 Phenotype denotes thyroid disease http://purl.obolibrary.org/obo/HP_0000820
T15 971-977 Phenotype denotes asthma http://purl.obolibrary.org/obo/HP_0002099

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T3 796-812 http://purl.obolibrary.org/obo/GO_0001508 denotes action potential

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T32 0-14 Sentence denotes Investigations
T33 15-153 Sentence denotes Blood tests revealed normal blood glucose levels and no findings suggestive of collagen disease, thyroid disease or vitamin abnormalities.
T34 154-288 Sentence denotes Cerebrospinal fluid (CSF) assessment at admission at approximately 3 weeks after onset revealed normal protein levels and cell counts.
T35 289-344 Sentence denotes All tests for antiganglioside antibodies were negative.
T36 345-471 Sentence denotes The ganglioside antigens used in the ELISA were GM1, GM2, GD1a, GD1b, GD3, GalNAc-GD1a, GT1a, GT1b, GQ1b and GA1 (asialo-GM1).
T37 472-623 Sentence denotes Ganglioside complexes containing two of the above 10 antigens were also used as described in a previous study.15 CSF was not tested for SARS-CoV-2 PCR.
T38 624-702 Sentence denotes On admission, the patient’s first electrophysiological examination was normal.
T39 703-935 Sentence denotes However, the second examination performed 1 week later revealed decreases in compound muscle action potential (CMAP) amplitudes in the median, radial and tibial nerves compared with those obtained in the first examination (table 1).
T40 936-1032 Sentence denotes Since the patient had a history of asthma, we did not perform lumbar MRI using a contrast agent.
T41 1033-1064 Sentence denotes Table 1 Nerve conduction study
T42 1065-1093 Sentence denotes Motor nerve conduction study
T43 1094-1181 Sentence denotes Nerve Distal latency (ms) Velocity (m/s) Amplitude (mV) F-wave minimal latency (ms)
T44 1182-1352 Sentence denotes At admission 1 week later 1 month later At admission 1 week later 1 month later At admission 1 week later 1 month later At admission 1 week later 1 month later
T45 1353-1361 Sentence denotes Median L
T46 1362-1466 Sentence denotes  Wrist–APB 3.4 (N<4.0) 3.7 3.4 57.7(N>50) 55.6 57.7 10.8 (N>7) 7.8 10.9 24.0 (N<29) 22 22.8
T47 1467-1501 Sentence denotes  Elbow–wrist 9.6 7.5 10.2
T48 1502-1509 Sentence denotes Ulnar L
T49 1510-1615 Sentence denotes  Wrist–ADM 2.6 (N<3.4) 2.6 2.8 58.8 (N>50) 56.4 60.8 10.0 (N>7) 11.1 8.2 21.1 (N<30) 24 23.2
T50 1616-1651 Sentence denotes  Elbow–wrist 9.4 10.7 7.7
T51 1652-1660 Sentence denotes Radial L
T52 1661-1741 Sentence denotes  Wrist–EIP 2.6 (N<2.9) 2.4 2.4 56.9 (N>50) 55.6 61.4 7.2 (N>7) 5.0 5.7
T53 1742-1776 Sentence denotes  Elbow–wrist 6.1 4.5 5.2
T54 1777-1785 Sentence denotes Tibial L
T55 1786-1896 Sentence denotes  Malleolus–FHB 3.6 (N<6.0) 3.8 3.2 50.8 (N>40) 46.5 46.9 22.6 (N>5) 16.3 20.3 42.8 (N<50) 46 44.1
T56 1897-1937 Sentence denotes  Knee–malleolus 18.6 13.9 15.7
T57 1938-1948 Sentence denotes Peroneal L
T58 1949-2028 Sentence denotes  Ankle–EDB 3.9 (N<5.5) 4.4 3.7 46.4 (N>40) 45.4 47.2 6.6 (N>5) 6.4 8.2
T59 2029-2069 Sentence denotes  Below fibula–ankle 6.2 5.7 7.0
T60 2070-2100 Sentence denotes Sensory nerve conduction study
T61 2101-2159 Sentence denotes Nerve Distal latency (ms) Velocity (m/s) Amplitude (mV)
T62 2160-2287 Sentence denotes At admission 1 week later 1 month later At admission 1 week later 1 month later At admission 1 week later 1 month later
T63 2288-2296 Sentence denotes Median L
T64 2297-2372 Sentence denotes  Wrist 3.1 (N<4.0) 3 3 48.4 (N>45) 49.0 48.7 24.1 (N>10) 22.9 19.1
T65 2373-2431 Sentence denotes  Elbow–wrist 60.1 (N>50) 56.1 61.1 12.1 12.5 10.8
T66 2432-2439 Sentence denotes Ulnar L
T67 2440-2519 Sentence denotes  Wrist 2.1 (N<3.4) 2.2 2.2 53.7 (N>45) 56.3 53.6 16.9 (N>10) 17.2 18.9
T68 2520-2575 Sentence denotes  Elbow–wrist 66.3 (N>50) 61.0 64.6 5.9 6.3 6.1
T69 2576-2584 Sentence denotes Radial L
T70 2585-2663 Sentence denotes  Wrist 2.5 (N<2.9) 1.8 2.1 58.5 (N>50) 56.8 59.1 19.1 (N>7) 21.3 18.2
T71 2664-2676 Sentence denotes  Elbow–wrist
T72 2677-2687 Sentence denotes Peroneal L
T73 2688-2767 Sentence denotes  Malleolus 2.7 (N<6.0) 2.7 3.4 51.9 (N>40) 52.2 47.3 3.2 (N>5) 7.3 3.2
T74 2768-2775 Sentence denotes Sural L
T75 2776-2854 Sentence denotes  Ankle 2.1 (N<5.5) 2.8 2.2 46.7 (N>40) 49.6 47.7 10.4 (N>5) 11.9 13.7
T76 2855-3074 Sentence denotes ADM, abductor digiti minimi; APB, abductor pollicis brevis; Bold, at least 20% lower than the first value; EDB, extensor digitorum brevis; EIP, extensor indicis proprius; FHB, flexor hallucis brevis; L, left; N, normal.

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T6 393-396 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050
T7 403-407 GlycoEpitope denotes GD1a http://www.glycoepitope.jp/epitopes/EP0056
T8 409-413 GlycoEpitope denotes GD1b http://www.glycoepitope.jp/epitopes/EP0059
T9 420-431 GlycoEpitope denotes GalNAc-GD1a http://www.glycoepitope.jp/epitopes/EP0058
T10 427-431 GlycoEpitope denotes GD1a http://www.glycoepitope.jp/epitopes/EP0056
T11 433-437 GlycoEpitope denotes GT1a http://www.glycoepitope.jp/epitopes/EP0066
T12 439-443 GlycoEpitope denotes GT1b http://www.glycoepitope.jp/epitopes/EP0067
T13 445-449 GlycoEpitope denotes GQ1b http://www.glycoepitope.jp/epitopes/EP0069
T14 466-469 GlycoEpitope denotes GM1 http://www.glycoepitope.jp/epitopes/EP0050