PMC:7597510 / 2788-4411
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T7 | 149-160 | Body_part | denotes | extremities | http://purl.org/sig/ont/fma/fma7182 |
| T8 | 373-378 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
| T9 | 827-844 | Body_part | denotes | lower extremities | http://purl.org/sig/ont/fma/fma7184 |
| T10 | 875-892 | Body_part | denotes | upper extremities | http://purl.org/sig/ont/fma/fma7183 |
| T11 | 953-964 | Body_part | denotes | extremities | http://purl.org/sig/ont/fma/fma7182 |
| T12 | 1047-1069 | Body_part | denotes | central nervous system | http://purl.org/sig/ont/fma/fma55675 |
| T13 | 1071-1077 | Body_part | denotes | Tendon | http://purl.org/sig/ont/fma/fma9721 |
| T14 | 1094-1111 | Body_part | denotes | upper extremities | http://purl.org/sig/ont/fma/fma7183 |
| T15 | 1158-1175 | Body_part | denotes | lower extremities | http://purl.org/sig/ont/fma/fma7184 |
| T16 | 1222-1228 | Body_part | denotes | muscle | http://purl.org/sig/ont/fma/fma32558 |
| T17 | 1278-1285 | Body_part | denotes | muscles | http://purl.org/sig/ont/fma/fma32558 |
| T18 | 1293-1310 | Body_part | denotes | lower extremities | http://purl.org/sig/ont/fma/fma7184 |
| T19 | 1352-1359 | Body_part | denotes | muscles | http://purl.org/sig/ont/fma/fma32558 |
| T20 | 1367-1384 | Body_part | denotes | upper extremities | http://purl.org/sig/ont/fma/fma7183 |
| T21 | 1562-1573 | Body_part | denotes | extremities | http://purl.org/sig/ont/fma/fma7182 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T2 | 373-378 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T3 | 1047-1069 | Body_part | denotes | central nervous system | http://purl.obolibrary.org/obo/UBERON_0001017 |
| T4 | 1055-1069 | Body_part | denotes | nervous system | http://purl.obolibrary.org/obo/UBERON_0001016 |
| T5 | 1071-1077 | Body_part | denotes | Tendon | http://purl.obolibrary.org/obo/UBERON_0000043 |
| T6 | 1206-1211 | Body_part | denotes | Scale | http://purl.obolibrary.org/obo/UBERON_0002542 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T52 | 56-62 | Disease | denotes | asthma | http://purl.obolibrary.org/obo/MONDO_0004979 |
| T53 | 321-329 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T54 | 350-359 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T55 | 577-583 | Disease | denotes | asthma | http://purl.obolibrary.org/obo/MONDO_0004979 |
| T56 | 683-689 | Disease | denotes | asthma | http://purl.obolibrary.org/obo/MONDO_0004979 |
| T57 | 1429-1432 | Disease | denotes | GBS | http://purl.obolibrary.org/obo/MONDO_0016218 |
| T58 | 1616-1622 | Disease | denotes | ataxia | http://purl.obolibrary.org/obo/MONDO_0000437 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T10 | 18-22 | http://purl.obolibrary.org/obo/CLO_0001599 | denotes | A 54 |
| T11 | 43-44 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T12 | 149-160 | http://www.ebi.ac.uk/efo/EFO_0000876 | denotes | extremities |
| T13 | 290-294 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T14 | 373-378 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T15 | 833-844 | http://www.ebi.ac.uk/efo/EFO_0000876 | denotes | extremities |
| T16 | 881-892 | http://www.ebi.ac.uk/efo/EFO_0000876 | denotes | extremities |
| T17 | 953-964 | http://www.ebi.ac.uk/efo/EFO_0000876 | denotes | extremities |
| T18 | 1047-1069 | http://purl.obolibrary.org/obo/UBERON_0001017 | denotes | central nervous system |
| T19 | 1047-1069 | http://www.ebi.ac.uk/efo/EFO_0000302 | denotes | central nervous system |
| T20 | 1047-1069 | http://www.ebi.ac.uk/efo/EFO_0000908 | denotes | central nervous system |
| T21 | 1071-1077 | http://www.ebi.ac.uk/cellline#tendon | denotes | Tendon |
| T22 | 1071-1077 | http://www.ebi.ac.uk/efo/EFO_0000952 | denotes | Tendon |
| T23 | 1100-1111 | http://www.ebi.ac.uk/efo/EFO_0000876 | denotes | extremities |
| T24 | 1164-1175 | http://www.ebi.ac.uk/efo/EFO_0000876 | denotes | extremities |
| T25 | 1222-1228 | http://purl.obolibrary.org/obo/UBERON_0001630 | denotes | muscle |
| T26 | 1222-1228 | http://purl.obolibrary.org/obo/UBERON_0005090 | denotes | muscle |
| T27 | 1222-1228 | http://www.ebi.ac.uk/efo/EFO_0000801 | denotes | muscle |
| T28 | 1222-1228 | http://www.ebi.ac.uk/efo/EFO_0001949 | denotes | muscle |
| T29 | 1278-1292 | http://purl.obolibrary.org/obo/UBERON_0001630 | denotes | muscles of the |
| T30 | 1278-1292 | http://purl.obolibrary.org/obo/UBERON_0005090 | denotes | muscles of the |
| T31 | 1278-1292 | http://www.ebi.ac.uk/efo/EFO_0001949 | denotes | muscles of the |
| T32 | 1278-1285 | http://www.ebi.ac.uk/efo/EFO_0000801 | denotes | muscles |
| T33 | 1299-1310 | http://www.ebi.ac.uk/efo/EFO_0000876 | denotes | extremities |
| T34 | 1352-1366 | http://purl.obolibrary.org/obo/UBERON_0001630 | denotes | muscles of the |
| T35 | 1352-1366 | http://purl.obolibrary.org/obo/UBERON_0005090 | denotes | muscles of the |
| T36 | 1352-1366 | http://www.ebi.ac.uk/efo/EFO_0001949 | denotes | muscles of the |
| T37 | 1352-1359 | http://www.ebi.ac.uk/efo/EFO_0000801 | denotes | muscles |
| T38 | 1373-1384 | http://www.ebi.ac.uk/efo/EFO_0000876 | denotes | extremities |
| T39 | 1562-1573 | http://www.ebi.ac.uk/efo/EFO_0000876 | denotes | extremities |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T10 | 380-386 | Chemical | denotes | oxygen | http://purl.obolibrary.org/obo/CHEBI_25805 |
| T11 | 472-482 | Chemical | denotes | budesonide | http://purl.obolibrary.org/obo/CHEBI_3207 |
| T12 | 484-503 | Chemical | denotes | formoterol fumarate | http://purl.obolibrary.org/obo/CHEBI_31633 |
| T13 | 484-494 | Chemical | denotes | formoterol | http://purl.obolibrary.org/obo/CHEBI_5147 |
| T14 | 495-503 | Chemical | denotes | fumarate | http://purl.obolibrary.org/obo/CHEBI_29806 |
| T15 | 504-511 | Chemical | denotes | hydrate | http://purl.obolibrary.org/obo/CHEBI_35505 |
| T16 | 516-534 | Chemical | denotes | montelukast sodium | http://purl.obolibrary.org/obo/CHEBI_6993 |
| T17 | 516-527 | Chemical | denotes | montelukast | http://purl.obolibrary.org/obo/CHEBI_50730 |
| T18 | 528-534 | Chemical | denotes | sodium | http://purl.obolibrary.org/obo/CHEBI_26708 |
| T19 | 606-619 | Chemical | denotes | betamethasone | http://purl.obolibrary.org/obo/CHEBI_3077 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 89 | 1324-1340 | Gene | denotes | proximal and 4/4 | |
| 90 | 1250-1266 | Gene | denotes | proximal and 5/5 | |
| 91 | 1605-1608 | Gene | denotes | she | Gene:126669 |
| 92 | 1386-1389 | Gene | denotes | she | Gene:126669 |
| 93 | 916-919 | Gene | denotes | she | Gene:126669 |
| 94 | 787-790 | Gene | denotes | she | Gene:126669 |
| 95 | 342-345 | Gene | denotes | she | Gene:126669 |
| 96 | 219-222 | Gene | denotes | she | Gene:126669 |
| 97 | 32-37 | Species | denotes | woman | Tax:9606 |
| 98 | 321-331 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 99 | 380-386 | Chemical | denotes | oxygen | MESH:D010100 |
| 100 | 472-482 | Chemical | denotes | budesonide | MESH:D019819 |
| 101 | 484-511 | Chemical | denotes | formoterol fumarate hydrate | MESH:D000068759 |
| 102 | 516-534 | Chemical | denotes | montelukast sodium | MESH:C093875 |
| 103 | 606-619 | Chemical | denotes | betamethasone | MESH:D001623 |
| 104 | 56-62 | Disease | denotes | asthma | MESH:D001249 |
| 105 | 120-128 | Disease | denotes | numbness | MESH:D006987 |
| 106 | 133-141 | Disease | denotes | weakness | MESH:D018908 |
| 107 | 196-217 | Disease | denotes | neurological symptoms | MESH:D009422 |
| 108 | 233-238 | Disease | denotes | cough | MESH:D003371 |
| 109 | 243-248 | Disease | denotes | fever | MESH:D005334 |
| 110 | 350-359 | Disease | denotes | pneumonia | MESH:D011014 |
| 111 | 577-583 | Disease | denotes | asthma | MESH:D001249 |
| 112 | 683-689 | Disease | denotes | asthma | MESH:D001249 |
| 113 | 811-819 | Disease | denotes | numbness | MESH:D006987 |
| 114 | 937-945 | Disease | denotes | weakness | MESH:D018908 |
| 115 | 1616-1622 | Disease | denotes | ataxia | MESH:D001259 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T6 | 56-62 | Phenotype | denotes | asthma | http://purl.obolibrary.org/obo/HP_0002099 |
| T7 | 233-238 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
| T8 | 243-248 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T9 | 350-359 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T10 | 577-583 | Phenotype | denotes | asthma | http://purl.obolibrary.org/obo/HP_0002099 |
| T11 | 683-689 | Phenotype | denotes | asthma | http://purl.obolibrary.org/obo/HP_0002099 |
| T12 | 1026-1069 | Phenotype | denotes | abnormalities in the central nervous system | http://purl.obolibrary.org/obo/HP_0002011 |
| T13 | 1616-1622 | Phenotype | denotes | ataxia | http://purl.obolibrary.org/obo/HP_0001251 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 272-285 | http://purl.obolibrary.org/obo/GO_0003968 | denotes | transcriptase |
| T2 | 272-285 | http://purl.obolibrary.org/obo/GO_0003899 | denotes | transcriptase |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T18 | 0-17 | Sentence | denotes | Case presentation |
| T19 | 18-161 | Sentence | denotes | A 54-year-old woman with a history of asthma was admitted to our hospital in May 2020 with reports of numbness and weakness in her extremities. |
| T20 | 162-332 | Sentence | denotes | Twenty days prior to the onset of neurological symptoms, she developed cough and fever; oropharyngeal reverse transcriptase PCR test results were positive for SARS-CoV-2. |
| T21 | 333-402 | Sentence | denotes | Although she had pneumonia on CT of the chest, oxygen was not needed. |
| T22 | 403-584 | Sentence | denotes | Therefore, we did not administer additional treatment, and continued budesonide, formoterol fumarate hydrate and montelukast sodium, that were originally being used to treat asthma. |
| T23 | 585-690 | Sentence | denotes | In addition, we used betamethasone only for the first 2 days to avoid the risk of exacerbation of asthma. |
| T24 | 691-763 | Sentence | denotes | Following approximately 2 weeks of treatment, PCR results were negative. |
| T25 | 764-893 | Sentence | denotes | However, at that time, she began to experience numbness in the lower extremities, that gradually spread to the upper extremities. |
| T26 | 894-965 | Sentence | denotes | Within the next week, she began to develop weakness in the extremities. |
| T27 | 966-1070 | Sentence | denotes | Neurological examination revealed no findings suggestive of abnormalities in the central nervous system. |
| T28 | 1071-1176 | Sentence | denotes | Tendon reflexes in the upper extremities were normal, although they were absent in the lower extremities. |
| T29 | 1177-1407 | Sentence | denotes | The Medical Research Council Scale grade for muscle strength was 4/4 for proximal and 5/5 for distal muscles of the lower extremities, and 4/4 for proximal and 4/4 for distal muscles of the upper extremities; she was able to walk. |
| T30 | 1408-1505 | Sentence | denotes | Her modified Erasmus GBS Outcome Score (mEGOS) was 3/9, while her Hughes’ functional grade was 2. |
| T31 | 1506-1623 | Sentence | denotes | Superficial sensation was mildly impaired in the distal extremities, deep sensation was normal and she had no ataxia. |