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PMC:7594251 / 95570-97019 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T204 261-268 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T205 461-470 Body_part denotes protein’s http://purl.org/sig/ont/fma/fma67257
T206 615-632 Body_part denotes protein complexes http://purl.org/sig/ont/fma/fma67906
T207 615-622 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T208 870-878 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T209 1099-1106 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T210 1164-1171 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T112 1205-1211 Disease denotes dengue http://purl.obolibrary.org/obo/MONDO_0005502
T113 1223-1226 Disease denotes NS3 http://purl.obolibrary.org/obo/MONDO_0012371

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T671 18-27 http://purl.obolibrary.org/obo/CLO_0007225 denotes Labelling
T672 28-29 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T673 135-143 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeling
T674 173-174 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T675 478-484 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T676 501-507 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T677 615-632 http://purl.obolibrary.org/obo/GO_0043234 denotes protein complexes
T678 932-938 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T679 1111-1112 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T680 1212-1217 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T681 1309-1310 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T614 12-17 Chemical denotes butyl http://purl.obolibrary.org/obo/CHEBI_41264
T615 152-157 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T616 175-191 Chemical denotes tert-butyl group http://purl.obolibrary.org/obo/CHEBI_30355
T617 180-185 Chemical denotes butyl http://purl.obolibrary.org/obo/CHEBI_41264
T618 186-191 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T619 209-215 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T620 261-268 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T621 269-275 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T622 295-311 Chemical denotes tert-butyl group http://purl.obolibrary.org/obo/CHEBI_30355
T623 300-305 Chemical denotes butyl http://purl.obolibrary.org/obo/CHEBI_41264
T624 306-311 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T625 378-384 Chemical denotes methyl http://purl.obolibrary.org/obo/CHEBI_32875|http://purl.obolibrary.org/obo/CHEBI_29309
T627 398-404 Chemical denotes methyl http://purl.obolibrary.org/obo/CHEBI_32875|http://purl.obolibrary.org/obo/CHEBI_29309
T629 431-436 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T630 471-473 Chemical denotes 1H http://purl.obolibrary.org/obo/CHEBI_49637
T631 490-500 Chemical denotes tert-butyl http://purl.obolibrary.org/obo/CHEBI_30355
T632 495-500 Chemical denotes butyl http://purl.obolibrary.org/obo/CHEBI_41264
T633 615-622 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T634 740-756 Chemical denotes tert-butyl group http://purl.obolibrary.org/obo/CHEBI_30355
T635 745-750 Chemical denotes butyl http://purl.obolibrary.org/obo/CHEBI_41264
T636 751-756 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T637 870-878 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T638 975-991 Chemical denotes tert-butyl group http://purl.obolibrary.org/obo/CHEBI_30355
T639 980-985 Chemical denotes butyl http://purl.obolibrary.org/obo/CHEBI_41264
T640 986-991 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T641 1099-1106 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T642 1150-1156 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T643 1164-1171 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T644 1291-1297 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T645 1311-1327 Chemical denotes tert-butyl group http://purl.obolibrary.org/obo/CHEBI_30355
T646 1316-1321 Chemical denotes butyl http://purl.obolibrary.org/obo/CHEBI_41264
T647 1322-1327 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T648 1383-1399 Chemical denotes tert-butyl group http://purl.obolibrary.org/obo/CHEBI_30355
T649 1388-1393 Chemical denotes butyl http://purl.obolibrary.org/obo/CHEBI_41264
T650 1394-1399 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T651 1403-1409 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
990 7-11 Gene denotes Tert Gene:7015
991 18-27 Disease denotes Labelling
1006 1223-1226 Gene denotes NS3 Gene:3845
1007 1383-1387 Gene denotes tert Gene:7015
1008 1311-1315 Gene denotes tert Gene:7015
1009 975-979 Gene denotes tert Gene:7015
1010 740-744 Gene denotes tert Gene:7015
1011 490-494 Gene denotes tert Gene:7015
1012 295-299 Gene denotes tert Gene:7015
1013 175-179 Gene denotes tert Gene:7015
1014 636-640 Gene denotes high Gene:104137
1015 664-691 Species denotes Bacillus stearothermophilus Tax:1422
1016 1205-1217 Species denotes dengue virus Tax:12637
1017 471-473 Chemical denotes 1H
1018 1424-1430 Chemical denotes Val155
1019 1436-1442 Chemical denotes DENpro

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T623 0-6 Sentence denotes 3.6.4.
T624 7-27 Sentence denotes Tert-butyl Labelling
T625 28-109 Sentence denotes A completely different approach to this topic was taken by Chen et al. [399,400].
T626 110-290 Sentence denotes Instead of using isotope labeling, Chen’s group decided to use a tert-butyl group contained within ligand-1 to obtain structural information about the protein-ligand complex [400].
T627 291-437 Sentence denotes The tert-butyl group formed an intense singlet in 1.0 to 1.5 ppm range thanks to rapid methyl rotation and methyl reorientation within that group.
T628 438-721 Sentence denotes When compared with the protein’s 1H-NMR signal, the tert-butyl signal tended to be much narrower and resulted in easy detection without the need for isotopic enrichment even in protein complexes of high molecular mass such as Bacillus stearothermophilus DnaB hexamer (320 kDa) [399].
T629 722-901 Sentence denotes Additionally, the tert-butyl group produces intense NOESY cross peaks that can be observed even in the situations where normally cross-peaks of the proteins are barely detectable.
T630 902-992 Sentence denotes This is partially because the signal corresponded to nine protons within tert-butyl group.
T631 993-1107 Sentence denotes Those aspects enable measurements of pseudo-contact shifts generated by paramagnetic tags attached to the protein.
T632 1108-1172 Sentence denotes As a result, it allows positioning of the ligand on the protein.
T633 1173-1328 Sentence denotes An example of this approach, is dengue virus NS2B-NS3 protease from serotype 2 (referred as DENpro) in complexed with ligand containing a tert-butyl group.
T634 1329-1449 Sentence denotes The result of this experiment showed NOEs between the tert-butyl group of ligand-1 and residue Val155 from DENpro [400].