PMC:7594251 / 84731-86074
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T165 | 556-563 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T166 | 598-605 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T167 | 872-879 | Body_part | denotes | histone | http://purl.org/sig/ont/fma/fma74413 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T94 | 256-259 | Disease | denotes | HTS | http://purl.obolibrary.org/obo/MONDO_0011549 |
| T95 | 701-704 | Disease | denotes | HTS | http://purl.obolibrary.org/obo/MONDO_0011549 |
| T96 | 899-902 | Disease | denotes | HAT | http://purl.obolibrary.org/obo/MONDO_0018048 |
| T97 | 1014-1017 | Disease | denotes | HAT | http://purl.obolibrary.org/obo/MONDO_0018048 |
| T98 | 1153-1156 | Disease | denotes | HAT | http://purl.obolibrary.org/obo/MONDO_0018048 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T616 | 81-84 | http://purl.obolibrary.org/obo/CLO_0001319 | denotes | 372 |
| T617 | 125-133 | http://purl.obolibrary.org/obo/PR_000001898 | denotes | called A |
| T618 | 298-299 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T619 | 300-304 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T620 | 400-405 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T621 | 528-535 | http://purl.obolibrary.org/obo/CLO_0007225 | denotes | labeled |
| T622 | 568-575 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T623 | 819-823 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T624 | 1211-1212 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T625 | 1308-1311 | http://purl.obolibrary.org/obo/CLO_0001319 | denotes | 372 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T95003 | 134-136 | Chemical | denotes | La | http://purl.obolibrary.org/obo/CHEBI_33336 |
| T87043 | 317-324 | Chemical | denotes | mixture | http://purl.obolibrary.org/obo/CHEBI_60004 |
| T15847 | 351-354 | Chemical | denotes | DTT | http://purl.obolibrary.org/obo/CHEBI_18320 |
| T34147 | 406-408 | Chemical | denotes | La | http://purl.obolibrary.org/obo/CHEBI_33336 |
| T40887 | 409-416 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
| T98818 | 536-538 | Chemical | denotes | La | http://purl.obolibrary.org/obo/CHEBI_33336 |
| T99168 | 539-546 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
| T86355 | 556-563 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T82641 | 595-597 | Chemical | denotes | La | http://purl.obolibrary.org/obo/CHEBI_33336 |
| T56507 | 598-605 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T98917 | 824-833 | Chemical | denotes | molecules | http://purl.obolibrary.org/obo/CHEBI_25367 |
| T43119 | 858-868 | Chemical | denotes | inhibitors | http://purl.obolibrary.org/obo/CHEBI_35222 |
| T59928 | 872-879 | Chemical | denotes | histone | http://purl.obolibrary.org/obo/CHEBI_15358 |
| T28691 | 904-914 | Chemical | denotes | inhibitors | http://purl.obolibrary.org/obo/CHEBI_35222 |
| T34467 | 1014-1028 | Chemical | denotes | HAT inhibitors | http://purl.obolibrary.org/obo/CHEBI_76395 |
| T53938 | 1018-1028 | Chemical | denotes | inhibitors | http://purl.obolibrary.org/obo/CHEBI_35222 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 856 | 483-486 | Gene | denotes | aid | Gene:57379 |
| 857 | 400-405 | Species | denotes | human | Tax:9606 |
| 858 | 335-349 | Chemical | denotes | dithiothreitol | MESH:D004229 |
| 859 | 351-354 | Chemical | denotes | DTT | MESH:D004229 |
| 860 | 366-369 | Chemical | denotes | 13C | MESH:C000615229 |
| 861 | 524-527 | Chemical | denotes | 13C | MESH:C000615229 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T554 | 0-86 | Sentence | denotes | NMR is also able to remove false positives that emerge from biochemical screens [372]. |
| T555 | 87-423 | Sentence | denotes | For example, an aptly named technique called A La Assay to detect Reactive Molecules by Nuclear Magnetic Resonance (ALARM NMR) is able to eliminate false positives from HTS methods [373], and in the presence of a test compound or mixture, measures dithiothreitol (DTT)-dependent 13C chemical shift changes of the human La antigen [373]. |
| T556 | 424-651 | Sentence | denotes | Dahlin et al. provided an updated protocol of ALARM NMR to aid researchers in the production of the 13C-labeled La antigen reporter protein, in testing compounds with the La protein, and in the analysis of obtained NMR spectra. |
| T557 | 652-721 | Sentence | denotes | Using ALARM NMR prioritized hits identified from HTS screening [374]. |
| T558 | 722-1050 | Sentence | denotes | An example of ALARM NMR is found in the work of Dahlin et al., where they used this technique to test molecules that were assumed to be inhibitors of histone acetyltransferase (HAT) inhibitors, and from their studies, actually discovered that 65% (15 out of 23) of the most commonly reported HAT inhibitors were actually faulty. |
| T559 | 1051-1163 | Sentence | denotes | They were actually nonselective interference compounds, not necessarily specific to the inhibition of HAT [375]. |
| T560 | 1164-1343 | Sentence | denotes | Thus, ALARM NMR (and NMR in general) served as a useful validation method, especially for unvalidated hits identified from biochemical screens [372] or other screening techniques. |