PMC:7594251 / 104267-105469 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T31 24-28 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T32 59-63 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T33 139-146 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T34 170-178 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T35 214-218 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T36 296-300 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T37 369-373 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T38 407-414 Body_part denotes oocytes http://purl.org/sig/ont/fma/fma18644
T39 428-433 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T40 451-456 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T41 469-474 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T42 497-502 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T43 564-568 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T44 598-602 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T45 791-799 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T46 864-871 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T47 966-973 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T48 1055-1077 Body_part denotes proteins and complexes http://purl.org/sig/ont/fma/fma67906
T49 1055-1063 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T50 1181-1188 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T43 24-28 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T44 59-63 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T45 112-119 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeled
T46 131-138 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeled
T47 199-206 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeled
T48 214-218 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T49 296-305 http://purl.obolibrary.org/obo/CL_0000000 denotes cell type
T50 314-322 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeling
T51 369-379 http://purl.obolibrary.org/obo/CL_0000000 denotes cell types
T52 391-399 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T53 416-419 http://purl.obolibrary.org/obo/CLO_0001360 denotes 412
T54 428-433 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T55 451-456 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T56 464-474 http://purl.obolibrary.org/obo/CLO_0054283 denotes HeLa cells
T57 464-474 http://purl.obolibrary.org/obo/CLO_0054285 denotes HeLa cells
T58 464-474 http://purl.obolibrary.org/obo/CLO_0054286 denotes HeLa cells
T59 464-474 http://purl.obolibrary.org/obo/CLO_0054287 denotes HeLa cells
T60 464-474 http://purl.obolibrary.org/obo/CLO_0054288 denotes HeLa cells
T61 464-474 http://purl.obolibrary.org/obo/CLO_0054289 denotes HeLa cells
T62 464-468 http://purl.obolibrary.org/obo/CLO_0003684 denotes HeLa
T63 464-468 http://purl.obolibrary.org/obo/CLO_0050910 denotes HeLa
T64 497-502 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T65 564-568 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T66 598-607 http://purl.obolibrary.org/obo/CL_0000000 denotes cell type
T67 694-702 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeling
T68 815-823 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeling
T69 824-827 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T70 845-846 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T71 1055-1077 http://purl.obolibrary.org/obo/GO_0043234 denotes proteins and complexes
T72 1106-1114 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeling

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T904 139-146 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T68030 170-178 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T15087 651-662 Chemical denotes application http://purl.obolibrary.org/obo/CHEBI_33232
T28739 791-799 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T30354 854-859 Chemical denotes probe http://purl.obolibrary.org/obo/CHEBI_50406
T31171 864-871 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T89156 872-878 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T4462 966-973 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T53184 974-980 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T12716 1055-1063 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T55010 1181-1188 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1120 276-284 Species denotes C) media Tax:140785
1123 127-130 Chemical denotes 15N
1124 252-255 Chemical denotes 13C MESH:C000615229
1125 257-260 Chemical denotes 15N
1126 270-273 Chemical denotes 15N
1129 704-707 Chemical denotes 15N

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 214-225 http://purl.obolibrary.org/obo/GO_0016049 denotes cell growth
T3 219-225 http://purl.obolibrary.org/obo/GO_0040007 denotes growth

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T694 0-4 Sentence denotes 4.2.
T695 5-32 Sentence denotes Target-Detected In-Cell NMR
T696 33-148 Sentence denotes In the target-detected in-cell NMR only the target of interest is isotopically labeled (i.e., 15N labeled protein).
T697 149-291 Sentence denotes For instance, target proteins can be isotopically labeled during cell growth in isotopically enriched (13C, 15N, or both 15N/13C) media [410].
T698 292-358 Sentence denotes The cell type and the labeling method may vary across experiments.
T699 359-546 Sentence denotes Different cell types, including bacteria [411], oocytes [412], yeast cells [413], mammalian cells [414], HeLa cells [415] and even insect cells [416] have been reported in the literature.
T700 547-681 Sentence denotes The fact that in-cell NMR applies to more than one cell type testifies of the versatility and potential application of this technique.
T701 682-800 Sentence denotes In terms of labeling, 15N is one of the most commonly used approaches [417] when the targets of interest are proteins.
T702 801-898 Sentence denotes Recently, 19F labeling has been reported as a useful probe for protein-ligand interactions [418].
T703 899-1000 Sentence denotes It was shown that 19F can reveal information about the dynamics of protein-ligand interactions [419].
T704 1001-1202 Sentence denotes Methyl groups [420] have also been used as probes for proteins and complexes in vivo [420], proving that labeling specific chemical groups instead of the entire biomolecule (i.e., protein) is feasible.