PMC:7594251 / 100974-102105 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T6 258-265 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T7 317-324 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T8 431-438 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T9 562-569 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T10 609-616 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T11 870-880 Body_part denotes intestinal http://purl.org/sig/ont/fma/fma7199
T12 881-891 Body_part denotes fatty acid http://purl.org/sig/ont/fma/fma82738
T13 900-907 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T14 1062-1069 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T114 248-251 Disease denotes CSP http://purl.obolibrary.org/obo/MONDO_0005078
T115 267-270 Disease denotes CSP http://purl.obolibrary.org/obo/MONDO_0005078
T116 415-418 Disease denotes CSP http://purl.obolibrary.org/obo/MONDO_0005078
T117 780-783 Disease denotes CSP http://purl.obolibrary.org/obo/MONDO_0005078

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T11 256-257 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 315-316 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 422-423 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 454-455 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 491-492 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 553-561 http://purl.obolibrary.org/obo/CLO_0007225 denotes labelled
T17 678-683 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T18 864-869 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T19 870-880 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestinal
T20 870-880 http://www.ebi.ac.uk/efo/EFO_0000834 denotes intestinal

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T21306 108-112 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T85693 131-133 Chemical denotes 1H http://purl.obolibrary.org/obo/CHEBI_49637
T57200 258-265 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T43008 317-324 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T28259 394-400 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T70946 431-438 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T39339 500-506 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T77983 562-569 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T24857 590-592 Chemical denotes 1H http://purl.obolibrary.org/obo/CHEBI_49637
T79343 609-616 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T60641 688-696 Chemical denotes hydrogen http://purl.obolibrary.org/obo/CHEBI_49637
T37117 834-850 Chemical denotes naphthoate ester http://purl.obolibrary.org/obo/CHEBI_46831
T41675 834-844 Chemical denotes naphthoate http://purl.obolibrary.org/obo/CHEBI_25482
T79793 845-850 Chemical denotes ester http://purl.obolibrary.org/obo/CHEBI_35701
T85096 881-891 Chemical denotes fatty acid http://purl.obolibrary.org/obo/CHEBI_35366
T48890 887-891 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T92250 900-907 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T53375 917-926 Chemical denotes ketorolac http://purl.obolibrary.org/obo/CHEBI_6129
T64655 927-930 Chemical denotes ANS http://purl.obolibrary.org/obo/CHEBI_39708
T63906 1019-1025 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T65279 1062-1069 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T23599 1070-1076 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1101 909-915 Gene denotes hIFABP Gene:2169
1102 864-869 Species denotes human Tax:9606
1103 131-133 Chemical denotes 1H
1104 549-552 Chemical denotes 15N
1105 590-592 Chemical denotes 1H
1106 688-696 Chemical denotes hydrogen MESH:D006859
1107 834-850 Chemical denotes naphthoate ester
1108 917-926 Chemical denotes ketorolac MESH:D020910
1109 927-930 Chemical denotes ANS MESH:C027132

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T664 0-6 Sentence denotes 3.6.8.
T665 7-12 Sentence denotes HECSP
T666 13-130 Sentence denotes In silico methods combined with NMR derived information can also be used to determine accurate drug-target complexes.
T667 131-266 Sentence denotes 1H empirical chemical shift perturbation (HECSP) is an empirical model that is based on chemical shift perturbation (CSP) of a protein.
T668 267-410 Sentence denotes CSP represents the change in chemical shifts in a protein due to alteration of its chemical environment (which can happen upon ligand binding).
T669 411-570 Sentence denotes The CSP of a target protein is obtained by a series of 2D HSQC experiments with a set of ligand titrations involving samples that contain 15N-labelled protein.
T670 571-648 Sentence denotes The calculation of 1H-CSPs inside the protein are based on four contributors:
T671 649-738 Sentence denotes 1) ring current, 2) electric field, 3) hydrogen bonding, and last 4) magnetic anisotropy.
T672 739-939 Sentence denotes To show the value of the HECSP model two CSP examples were used: apo-neocarzinostatin (apoNCS)-naphthoate ester complex, and human intestinal fatty acid binding protein (hIFABP)-ketorolac-ANS complex.
T673 940-1131 Sentence denotes The results from the experiment showed that HECSP model can distinguish native ligand from decoys and more clearly define protein-ligand complex structures with NMR derived information [407].