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PMC:7574920 / 61502-62518 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T199 474-477 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T200 567-570 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T108 625-633 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T476 81-84 http://purl.obolibrary.org/obo/CL_0000990 denotes DC1
T477 112-114 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T478 142-144 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T479 142-144 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T480 310-311 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T481 417-419 http://purl.obolibrary.org/obo/CLO_0008933 denotes S5
T482 651-653 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T483 716-718 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T484 716-718 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T485 763-767 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T486 835-839 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T487 904-906 http://purl.obolibrary.org/obo/CLO_0008933 denotes S5
T488 983-985 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T51063 142-144 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T87587 254-256 Chemical denotes S3 http://purl.obolibrary.org/obo/CHEBI_29388
T57515 373-375 Chemical denotes S4 http://purl.obolibrary.org/obo/CHEBI_29401
T44537 417-419 Chemical denotes S5 http://purl.obolibrary.org/obo/CHEBI_29386
T33478 716-718 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T13400 788-790 Chemical denotes S3 http://purl.obolibrary.org/obo/CHEBI_29388
T43387 850-852 Chemical denotes 5B http://purl.obolibrary.org/obo/CHEBI_27560
T55889 860-862 Chemical denotes S4 http://purl.obolibrary.org/obo/CHEBI_29401
T1291 904-906 Chemical denotes S5 http://purl.obolibrary.org/obo/CHEBI_29386

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T314 164-166 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T315 198-200 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T316 276-278 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T317 332-334 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T318 515-517 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T319 589-591 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T320 755-757 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T321 827-829 http://purl.obolibrary.org/obo/GO_0001171 denotes RT

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T465 0-23 Sentence denotes SUPPLEMENTARY MATERIALS
T466 24-84 Sentence denotes stm.sciencemag.org/cgi/content/full/scitranslmed.abc7075/DC1
T467 85-106 Sentence denotes Materials and Methods
T468 107-115 Sentence denotes Fig. S1.
T469 116-136 Sentence denotes Design of the study.
T470 137-145 Sentence denotes Fig. S2.
T471 146-248 Sentence denotes Comparison of the RT-LAMP assay with CT values from RT-qPCR using primer sets E-Sarbeco and N-Sarbeco.
T472 249-257 Sentence denotes Fig. S3.
T473 258-367 Sentence denotes Comparison of the RT-LAMP assay using primer set 1a-A with CT values from RT-qPCR using primer set E-Sarbeco.
T474 368-376 Sentence denotes Fig. S4.
T475 377-411 Sentence denotes Analysis of LAMP-sequencing reads.
T476 412-420 Sentence denotes Fig. S5.
T477 421-464 Sentence denotes Sample classification with LAMP-sequencing.
T478 465-473 Sentence denotes Fig. S6.
T479 474-571 Sentence denotes RNA stability and detection limit of the RT-LAMP assay in pharyngeal swab specimens with IVT RNA.
T480 572-580 Sentence denotes Fig. S7.
T481 581-644 Sentence denotes Swab–to–RT-LAMP assay titration of positive COVID-19 specimens.
T482 645-654 Sentence denotes Table S1.
T483 655-709 Sentence denotes Sequences of primers and amplicons used in this study.
T484 710-719 Sentence denotes Table S2.
T485 720-781 Sentence denotes Sensitivity and specificity of the RT-LAMP test from Fig. 3B.
T486 782-791 Sentence denotes Table S3.
T487 792-853 Sentence denotes Sensitivity and specificity of the RT-LAMP test from Fig. 5B.
T488 854-863 Sentence denotes Table S4.
T489 864-897 Sentence denotes Primers used for LAMP-sequencing.
T490 898-907 Sentence denotes Table S5.
T491 908-972 Sentence denotes Overview of time requirements for various sample handling steps.
T492 973-986 Sentence denotes Data File S1.
T493 987-1005 Sentence denotes Raw data for figs.
T494 1006-1016 Sentence denotes S6 and S7.