| Id |
Subject |
Object |
Predicate |
Lexical cue |
| T415 |
0-20 |
Sentence |
denotes |
Statistical analysis |
| T416 |
21-158 |
Sentence |
denotes |
Except where otherwise noted, all data were analyzed with R (46) using the tidyverse (47) and ggplot2 (48) system or with GraphPad Prism. |
| T417 |
159-237 |
Sentence |
denotes |
Sensitivity and specificity values were obtained from count tables as follows: |
| T418 |
238-375 |
Sentence |
denotes |
Specificity of the RT-LAMP assay was calculated as the fraction of RT-qPCR–negative samples that were also negative in the RT-LAMP assay. |
| T419 |
376-539 |
Sentence |
denotes |
Sensitivity for a given CT interval was calculated as the fraction of all samples with an RT-qPCR CT value in that interval that was positive in the RT-LAMP assay. |
| T420 |
540-762 |
Sentence |
denotes |
In both cases, 95% confidence intervals were calculated by interpreting the fractions of counts as binomial rates and then using Wilson’s method for binomial confidence intervals as implemented in the R package binom (49). |
| T421 |
763-927 |
Sentence |
denotes |
The R code used to perform analyses and produce figures can be found on GitHub, together with all data tables: https://github.com/anders-biostat/LAMP-Paper-Figures. |
