PMC:7574920 / 56142-56737
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T196 | 162-166 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T106 | 149-157 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T453 | 113-114 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T454 | 138-139 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T455 | 162-166 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T456 | 423-426 | http://purl.obolibrary.org/obo/PR_000001343 | denotes | aim |
| T457 | 455-456 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T458 | 561-566 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 392 | 160-161 | Gene | denotes | N | Gene:43740575 |
| 393 | 149-159 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T299 | 259-261 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T404 | 0-112 | Sentence | denotes | For classification of samples by LAMP-sequencing, reads were assigned to wells and counted using custom scripts. |
| T405 | 113-336 | Sentence | denotes | A read was considered as a match to SARS-CoV-2 N gene if at least one of three short sequences (~13 nt, marked orange in fig. S4A) not covered by RT-LAMP primers was found in the read, otherwise it was counted as unmatched. |
| T406 | 337-454 | Sentence | denotes | Sequencing reads were grouped by UMI and by position of the matched sequence with the aim of removing PCR duplicates. |
| T407 | 455-595 | Sentence | denotes | A sample was considered if more than 200 total UMIs were observed and called positive if more than 10,000 virus-matching UMIs were observed. |