PMC:7574920 / 49303-50777
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T188 | 112-115 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T189 | 1402-1406 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T415 | 530-531 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T416 | 632-633 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T417 | 1013-1014 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T418 | 1105-1106 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T419 | 1402-1406 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T93821 | 467-472 | Chemical | denotes | water | http://purl.obolibrary.org/obo/CHEBI_15377 |
T20136 | 880-888 | Chemical | denotes | reagents | http://purl.obolibrary.org/obo/CHEBI_33893 |
T63187 | 904-907 | Chemical | denotes | CO2 | http://purl.obolibrary.org/obo/CHEBI_16526 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
336 | 333-336 | Gene | denotes | Mix | Gene:83881 |
337 | 596-599 | Gene | denotes | mix | Gene:83881 |
338 | 416-419 | Gene | denotes | mix | Gene:83881 |
339 | 467-472 | Chemical | denotes | water | MESH:D014867 |
340 | 904-907 | Chemical | denotes | CO2 | MESH:D002245 |
341 | 1301-1306 | Chemical | denotes | metal | MESH:D008670 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T286 | 0-2 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
T287 | 139-141 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
T288 | 315-317 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
T289 | 920-933 | http://purl.obolibrary.org/obo/GO_0045851 | denotes | acidification |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T356 | 0-13 | Sentence | denotes | RT-LAMP assay |
T357 | 14-155 | Sentence | denotes | Assays were assembled in total reaction volumes of either 12.5 μl (for LAMP assays using isolated RNA) or 20 μl (for swab–to–RT-LAMP assays). |
T358 | 156-490 | Sentence | denotes | Master mixes were prepared at room temperature for each reaction immediately before use with either 6.25 or 10 μl, respectively, of the WarmStart Colorimetric RT-LAMP 2X Master Mix (M1800, New England Biolabs) and 1.25 or 2 μl, respectively, of the 10× primer mix, filled up to 11.5 or 19 μl with nuclease-free water (AM9937, Ambion). |
T359 | 491-525 | Sentence | denotes | Values given are for one reaction: |
T360 | 526-805 | Sentence | denotes | For a 96-well plate, 100 times larger volumes were used, and the LAMP mix was distributed to the wells of a 96-well plate (4ti-0960/C, Brooks Life Sciences or 0030128672, Eppendorf) before pipetting 1 μl of sample into each well of the plate; for details, see previous paragraph. |
T361 | 806-987 | Sentence | denotes | Plates were prepared immediately before use to limit exposure of the LAMP reagents to atmospheric CO2 (to prevent acidification of the reaction) and kept on an ice-cold metal block. |
T362 | 988-1171 | Sentence | denotes | Plates were sealed using a transparent adhesive foil (GK480-OS, Kisker Biotech), and the reactions were incubated in a PCR cycler at 65°C for 15 to 60 min with the lid heated to 75°C. |
T363 | 1172-1322 | Sentence | denotes | To perform measurements at the indicated time points, the reactions were taken out of the PCR cycler and placed into an ice cold metal block for 30 s. |
T364 | 1323-1373 | Sentence | denotes | This intensifies the color before the measurement. |
T365 | 1374-1474 | Sentence | denotes | Photographs were taken with cell phone cameras or the scanner function of an office copying machine. |