> top > docs > PMC:7574920 > spans > 49303-50777 > annotations

PMC:7574920 / 49303-50777 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T188 112-115 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T189 1402-1406 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T415 530-531 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T416 632-633 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T417 1013-1014 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T418 1105-1106 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T419 1402-1406 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T93821 467-472 Chemical denotes water http://purl.obolibrary.org/obo/CHEBI_15377
T20136 880-888 Chemical denotes reagents http://purl.obolibrary.org/obo/CHEBI_33893
T63187 904-907 Chemical denotes CO2 http://purl.obolibrary.org/obo/CHEBI_16526

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
336 333-336 Gene denotes Mix Gene:83881
337 596-599 Gene denotes mix Gene:83881
338 416-419 Gene denotes mix Gene:83881
339 467-472 Chemical denotes water MESH:D014867
340 904-907 Chemical denotes CO2 MESH:D002245
341 1301-1306 Chemical denotes metal MESH:D008670

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T286 0-2 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T287 139-141 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T288 315-317 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T289 920-933 http://purl.obolibrary.org/obo/GO_0045851 denotes acidification

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T356 0-13 Sentence denotes RT-LAMP assay
T357 14-155 Sentence denotes Assays were assembled in total reaction volumes of either 12.5 μl (for LAMP assays using isolated RNA) or 20 μl (for swab–to–RT-LAMP assays).
T358 156-490 Sentence denotes Master mixes were prepared at room temperature for each reaction immediately before use with either 6.25 or 10 μl, respectively, of the WarmStart Colorimetric RT-LAMP 2X Master Mix (M1800, New England Biolabs) and 1.25 or 2 μl, respectively, of the 10× primer mix, filled up to 11.5 or 19 μl with nuclease-free water (AM9937, Ambion).
T359 491-525 Sentence denotes Values given are for one reaction:
T360 526-805 Sentence denotes For a 96-well plate, 100 times larger volumes were used, and the LAMP mix was distributed to the wells of a 96-well plate (4ti-0960/C, Brooks Life Sciences or 0030128672, Eppendorf) before pipetting 1 μl of sample into each well of the plate; for details, see previous paragraph.
T361 806-987 Sentence denotes Plates were prepared immediately before use to limit exposure of the LAMP reagents to atmospheric CO2 (to prevent acidification of the reaction) and kept on an ice-cold metal block.
T362 988-1171 Sentence denotes Plates were sealed using a transparent adhesive foil (GK480-OS, Kisker Biotech), and the reactions were incubated in a PCR cycler at 65°C for 15 to 60 min with the lid heated to 75°C.
T363 1172-1322 Sentence denotes To perform measurements at the indicated time points, the reactions were taken out of the PCR cycler and placed into an ice cold metal block for 30 s.
T364 1323-1373 Sentence denotes This intensifies the color before the measurement.
T365 1374-1474 Sentence denotes Photographs were taken with cell phone cameras or the scanner function of an office copying machine.