PMC:7574920 / 4552-5214
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T18 | 219-222 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T19 | 260-266 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T20 | 362-365 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T21 | 371-374 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
| T22 | 407-410 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
| T23 | 536-542 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T34 | 4-12 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T50 | 40-43 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T51 | 103-107 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T52 | 300-301 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T53 | 388-389 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T54 | 499-500 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T55 | 509-510 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T56 | 589-590 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T57 | 631-638 | http://purl.obolibrary.org/obo/CLO_0007225 | denotes | labeled |
| T58 | 644-645 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T5 | 371-374 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
| T6 | 407-410 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
| T7 | 443-459 | Chemical | denotes | oligonucleotides | http://purl.obolibrary.org/obo/CHEBI_7754 |
| T8 | 609-624 | Chemical | denotes | oligonucleotide | http://purl.obolibrary.org/obo/CHEBI_7754 |
| T9 | 625-630 | Chemical | denotes | probe | http://purl.obolibrary.org/obo/CHEBI_50406 |
| T10 | 646-661 | Chemical | denotes | fluorescent dye | http://purl.obolibrary.org/obo/CHEBI_51121 |
| T11 | 658-661 | Chemical | denotes | dye | http://purl.obolibrary.org/obo/CHEBI_37958 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 87 | 4-14 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 88 | 443-459 | Chemical | denotes | oligonucleotides | MESH:D009841 |
| 89 | 609-624 | Chemical | denotes | oligonucleotide | MESH:D009841 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25 | 270-272 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T26 | 310-323 | http://purl.obolibrary.org/obo/GO_0003968 | denotes | transcriptase |
| T27 | 310-323 | http://purl.obolibrary.org/obo/GO_0003899 | denotes | transcriptase |
| T28 | 325-327 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T32 | 0-278 | Sentence | denotes | The SARS-CoV-2 diagnostic pipeline that has proven to be successful and that is currently used in many test centers consists of three steps: collecting nasopharyngeal or oropharyngeal swab specimens, isolation of total RNA, and specific detection of the viral genome by RT-qPCR. |
| T33 | 279-495 | Sentence | denotes | The latter comprises a reverse transcriptase (RT) step, which translates the viral RNA into DNA, followed by a semiquantitative DNA polymerase chain reaction using oligonucleotides specific for the viral cDNA (qPCR). |
| T34 | 496-662 | Sentence | denotes | As a result, a short piece of the viral genome is strongly amplified and then is detected by a sequence-specific oligonucleotide probe labeled with a fluorescent dye. |