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PMC:7574920 / 40636-41679 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T150 60-63 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T151 949-956 Body_part denotes pharynx http://purl.org/sig/ont/fma/fma46688

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T11 949-956 Body_part denotes pharynx http://purl.obolibrary.org/obo/UBERON_0006562

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T85 409-417 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T86 420-429 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T87 585-595 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T88 625-633 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T89 711-719 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T90 722-731 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T91 826-834 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T342 85-86 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T343 172-179 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T344 407-408 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T345 636-641 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T346 709-710 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T347 758-759 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T348 892-893 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T349 921-922 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T350 949-956 http://purl.obolibrary.org/obo/UBERON_0001042 denotes pharynx
T351 949-956 http://purl.obolibrary.org/obo/UBERON_0006562 denotes pharynx

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
269 625-635 Species denotes SARS-CoV-2 Tax:2697049
270 409-429 Disease denotes SARS-CoV-2 infection MESH:C000657245
271 711-731 Disease denotes SARS-CoV-2 infection MESH:C000657245
272 826-834 Disease denotes COVID-19 MESH:C000657245
273 1015-1023 Disease denotes infected MESH:D007239

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T246 330-332 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T247 499-501 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T248 530-532 http://purl.obolibrary.org/obo/GO_0001171 denotes RT

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T299 0-43 Sentence denotes There are several limitations to our study.
T300 44-154 Sentence denotes We used surplus RNA sample material from a diagnostic laboratory rather than newly collected clinical samples.
T301 155-258 Sentence denotes The criteria for testing individuals may have influenced cohort characteristics and hence our findings.
T302 259-430 Sentence denotes It is not clear yet how well viral load as indicated by CT values from RT-qPCR assays informs about the degree of infectivity of an individual with a SARS-CoV-2 infection.
T303 431-642 Sentence denotes Therefore, we cannot say how our findings on the sensitivity of the RT-LAMP assay in comparison to RT-qPCR would translate into sensitivity for detecting infectious individuals who are shedding SARS-CoV-2 virus.
T304 643-843 Sentence denotes Moreover, the measured viral load does not indicate the course of a SARS-CoV-2 infection, as even individuals with a very low measured viral load can still develop severe symptoms of COVID-19 disease.
T305 844-1043 Sentence denotes This may be, in part, because the viral load in a clinical sample taken from a specific site such as the pharynx is not representative of the overall viral burden that an infected individual carries.