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PMC:7574920 / 30241-31208 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T123 100-103 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T71 149-151 Disease denotes OD http://purl.obolibrary.org/obo/MONDO_0017178
T72 632-634 Disease denotes OD http://purl.obolibrary.org/obo/MONDO_0017178

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T272 113-114 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T273 234-235 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T274 905-906 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
225 293-295 Gene denotes pH Gene:5053

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T185 48-50 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T186 71-73 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T187 454-456 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T188 513-515 http://purl.obolibrary.org/obo/GO_0001171 denotes RT

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T232 0-210 Sentence denotes Comparison of the results of the direct swab–to–RT-LAMP assay with the RT-LAMP assay using isolated RNA revealed a much broader distribution of the ΔOD measurements in negative samples (Fig. 5A versus Fig. 3A).
T233 211-317 Sentence denotes This was likely due to a sample-specific variability that influenced the starting pH in the LAMP reaction.
T234 318-404 Sentence denotes This might have affected the interpretability of the measurement at 30 min (ΔOD30min).
T235 405-468 Sentence denotes We investigated how this pH shift influenced the RT-LAMP assay.
T236 469-601 Sentence denotes For three plates, the data acquired for the RT-LAMP assay also included measurements for the 10-min time point (ΔOD10min) (Fig. 6A).
T237 602-784 Sentence denotes We plotted the change of the ΔOD between the 10- and 30-min time points (i.e., the difference ΔOD30min – ΔOD10min, corresponding to the slope of the lines) versus ΔOD30min (Fig. 6B).
T238 785-967 Sentence denotes This removed the variability of the values for samples that did not change their color (negative samples) and permitted a better separation of the positive from the negative samples.