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PMC:7574920 / 250-1212 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T4 31-34 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T5 477-480 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T6 714-717 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T7 850-853 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 685-690 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 20-28 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T4 112-121 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T5 131-139 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 564-572 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 703-711 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T3 0-1 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T4 11-15 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T5 79-83 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T6 275-290 http://purl.obolibrary.org/obo/OBI_0000968 denotes instrumentation
T7 424-430 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T8 553-559 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T9 616-617 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 691-698 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T11 754-755 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 842-843 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 880-881 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
5 20-30 Species denotes SARS-CoV-2 Tax:2697049
13 409-412 Gene denotes Dao Gene:1610
14 101-107 Species denotes people Tax:9606
15 131-141 Species denotes SARS-CoV-2 Tax:2697049
16 142-153 Species denotes coronavirus Tax:11118
17 703-713 Species denotes SARS-CoV-2 Tax:2697049
18 112-121 Disease denotes infection MESH:D007239
19 564-572 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 185-206 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T3 193-206 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T4 208-210 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T5 435-437 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T6 598-600 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T7 667-669 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T8 806-808 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T9 926-928 http://purl.obolibrary.org/obo/GO_0001171 denotes RT

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T3 0-44 Sentence denotes A colorful test for SARS-CoV-2 RNA detection
T4 45-154 Sentence denotes We need simple methods to rapidly test large numbers of people for infection with the SARS-CoV-2 coronavirus.
T5 155-291 Sentence denotes Quantitative PCR (qPCR) after reverse transcription (RT), the standard method, is very sensitive but requires expensive instrumentation.
T6 292-408 Sentence denotes Loop-mediated isothermal amplification (LAMP) is an alternative to qPCR that is faster and requires fewer resources.
T7 409-573 Sentence denotes Dao Thi et al. tested the RT-LAMP assay on several hundred clinical RNA samples isolated from pharyngeal swabs collected from individuals being tested for COVID-19.
T8 574-718 Sentence denotes They confirmed that the RT-LAMP assay was a simpler albeit less sensitive option compared to RT-qPCR for large-scale testing for SARS-CoV-2 RNA.
T9 719-962 Sentence denotes These investigators also developed a simplified version of this method (direct swab–to–RT-LAMP assay) that did not require a prior RNA isolation step as well as a method for highly multiplexed sequencing of RT-LAMP reactions (LAMP-sequencing).