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PMC:7574920 / 19420-20486 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T100 161-164 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T101 456-459 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T62 77-79 Disease denotes OD http://purl.obolibrary.org/obo/MONDO_0017178
T63 150-158 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T64 445-453 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T65 803-805 Disease denotes OD http://purl.obolibrary.org/obo/MONDO_0017178

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T194 61-62 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T195 90-91 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T196 206-207 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T197 361-363 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T198 488-489 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T199 861-869 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test was
T200 1062-1064 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T201 1062-1064 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T55 640-647 Chemical denotes reagent http://purl.obolibrary.org/obo/CHEBI_33893
T56 1062-1064 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
203 744-758 Gene denotes 3A and Table 1
204 150-160 Species denotes SARS-CoV-2 Tax:2697049
205 445-455 Species denotes SARS-CoV-2 Tax:2697049
206 877-883 Disease denotes Wilson MESH:D006527
207 994-1000 Disease denotes Wilson MESH:D006527

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T114 176-178 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T115 239-241 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T116 414-416 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T117 671-673 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T118 724-726 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T119 853-855 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T120 975-977 http://purl.obolibrary.org/obo/GO_0001171 denotes RT

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T131 176-375 Sentence denotes RT-qPCR–positive samples with a CT < 30 scored positive in the RT-LAMP assay (79 of 81), whereas almost all samples with CT values between 30 and 40 scored negative (only 4 positive of 36) (Fig. 3B).
T132 376-498 Sentence denotes This confirmed the sensitivity of the RT-LAMP assay for detection of SARS-CoV-2 RNA in samples corresponding to a CT < 30.
T133 499-657 Sentence denotes We observed small differences between different plates on the exact sensitivity threshold, probably caused by slight variability in plate or reagent handling.
T134 658-821 Sentence denotes We found two RT-qPCR–negative samples that scored positive in the RT-LAMP assay (Fig. 3A and Table 1) and one sample that scored just below the ΔOD cutoff of +0.3.
T135 822-910 Sentence denotes The overall specificity of the RT-LAMP test was 99.7% (Wilson’s 95% confidence interval:
T136 911-1027 Sentence denotes 98.9 to 99.9%), and the sensitivity for samples with CT < 30 on RT-qPCR was 97.5% (Wilson’s 95% confidence interval:
T137 1028-1066 Sentence denotes 91.4 to 99.3%) (Fig. 3B and table S2).