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PMC:7574920 / 17771-19060 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T97 85-88 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T98 130-133 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T99 864-868 Body_part denotes axis http://purl.org/sig/ont/fma/fma12520

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T178 1-2 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T179 23-24 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T180 97-103 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T181 166-167 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T182 206-207 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T183 522-523 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T184 612-613 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T185 869-875 http://purl.obolibrary.org/obo/CLO_0007225 denotes labels
T186 1008-1009 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T187 1285-1287 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T188 1285-1287 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T53 1285-1287 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
197 1229-1235 Disease denotes Wilson MESH:D006527

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T100 39-41 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T101 65-67 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T102 292-294 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T103 489-491 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T104 505-507 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T105 575-577 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T106 674-676 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T107 739-741 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T108 775-777 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T109 1033-1035 http://purl.obolibrary.org/obo/GO_0001171 denotes RT

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T113 0-125 Sentence denotes (A) Scatter plot shows a comparison of RT-LAMP assay results and RT-qPCR results for RNA samples tested on 10 96-well plates.
T114 126-240 Sentence denotes The RNA extraction method (QC, QiaCube, a column-based method; QS, QiaSymphony, a bead-based method) is indicated.
T115 241-356 Sentence denotes The time point for measurement by the colorimetric RT-LAMP assay was 30 min after the start of the 65°C incubation.
T116 357-412 Sentence denotes The 96-well plate shown in Fig. 2 is not included here.
T117 413-638 Sentence denotes Table 1 shows numbers of samples stratified according to the results of the RT-LAMP and the RT-qPCR assays. (B) Sensitivity (right) and specificity (left) of the RT-LAMP assay [derived from data in (A) and Table 1] are shown.
T118 639-753 Sentence denotes The specificity is the fraction of RT-qPCR–negative samples correctly identified as negative by the RT-LAMP assay.
T119 754-1047 Sentence denotes For sensitivity, the RT-qPCR–positive samples were stratified by CT values into three bins (as indicated by x axis labels), and for each bin, the sensitivity is given as the fraction of qPCR-positive samples in the respective CT bin that have also given a positive result in the RT-LAMP assay.
T120 1048-1289 Sentence denotes The thick black lines indicate the values of these fractions (i.e., the specificity and sensitivity estimates); the black boxes indicate the corresponding 95% confidence intervals (Wilson’s binomial confidence interval). (See also table S2).