PMC:7574920 / 17718-19060
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T96 | 24-27 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T97 | 138-141 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T98 | 183-186 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T99 | 917-921 | Body_part | denotes | axis | http://purl.org/sig/ont/fma/fma12520 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T61 | 13-21 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T178 | 54-55 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T179 | 76-77 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T180 | 150-156 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T181 | 219-220 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T182 | 259-260 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T183 | 575-576 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T184 | 665-666 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T185 | 922-928 | http://purl.obolibrary.org/obo/CLO_0007225 | denotes | labels |
| T186 | 1061-1062 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T187 | 1338-1340 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T188 | 1338-1340 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T53 | 1338-1340 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 195 | 13-23 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 197 | 1282-1288 | Disease | denotes | Wilson | MESH:D006527 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T99 | 38-40 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T100 | 92-94 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T101 | 118-120 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T102 | 345-347 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T103 | 542-544 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T104 | 558-560 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T105 | 628-630 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T106 | 727-729 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T107 | 792-794 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T108 | 828-830 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T109 | 1086-1088 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T113 | 53-178 | Sentence | denotes | (A) Scatter plot shows a comparison of RT-LAMP assay results and RT-qPCR results for RNA samples tested on 10 96-well plates. |
| T114 | 179-293 | Sentence | denotes | The RNA extraction method (QC, QiaCube, a column-based method; QS, QiaSymphony, a bead-based method) is indicated. |
| T115 | 294-409 | Sentence | denotes | The time point for measurement by the colorimetric RT-LAMP assay was 30 min after the start of the 65°C incubation. |
| T116 | 410-465 | Sentence | denotes | The 96-well plate shown in Fig. 2 is not included here. |
| T117 | 466-691 | Sentence | denotes | Table 1 shows numbers of samples stratified according to the results of the RT-LAMP and the RT-qPCR assays. (B) Sensitivity (right) and specificity (left) of the RT-LAMP assay [derived from data in (A) and Table 1] are shown. |
| T118 | 692-806 | Sentence | denotes | The specificity is the fraction of RT-qPCR–negative samples correctly identified as negative by the RT-LAMP assay. |
| T119 | 807-1100 | Sentence | denotes | For sensitivity, the RT-qPCR–positive samples were stratified by CT values into three bins (as indicated by x axis labels), and for each bin, the sensitivity is given as the fraction of qPCR-positive samples in the respective CT bin that have also given a positive result in the RT-LAMP assay. |
| T120 | 1101-1342 | Sentence | denotes | The thick black lines indicate the values of these fractions (i.e., the specificity and sensitivity estimates); the black boxes indicate the corresponding 95% confidence intervals (Wilson’s binomial confidence interval). (See also table S2). |