PMC:7574920 / 11189-11869
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T63 | 50-63 | Body_part | denotes | RNA molecules | http://purl.org/sig/ont/fma/fma84126 |
| T64 | 50-53 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T65 | 84-88 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T66 | 583-596 | Body_part | denotes | RNA molecules | http://purl.org/sig/ont/fma/fma84126 |
| T67 | 583-586 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T48 | 71-79 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T49 | 572-580 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T104 | 1-2 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T105 | 84-88 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T106 | 395-396 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T107 | 452-455 | http://purl.obolibrary.org/obo/CLO_0001562 | denotes | a 2 |
| T108 | 452-455 | http://purl.obolibrary.org/obo/CLO_0001563 | denotes | a 2 |
| T109 | 498-499 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T110 | 633-634 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T40 | 54-63 | Chemical | denotes | molecules | http://purl.obolibrary.org/obo/CHEBI_25367 |
| T41 | 457-464 | Chemical | denotes | agarose | http://purl.obolibrary.org/obo/CHEBI_2511 |
| T42 | 587-596 | Chemical | denotes | molecules | http://purl.obolibrary.org/obo/CHEBI_25367 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 151 | 82-83 | Gene | denotes | N | Gene:43740575 |
| 152 | 71-81 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 153 | 572-582 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 154 | 225-228 | Chemical | denotes | ice | MESH:D007053 |
| 155 | 457-464 | Chemical | denotes | agarose | MESH:D012685 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T60 | 107-109 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T61 | 402-404 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T62 | 511-513 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T72 | 0-146 | Sentence | denotes | (A) Defined numbers of in vitro transcribed (IVT) RNA molecules of the SARS-CoV-2 N gene were added to the RT-LAMP reaction and incubated at 65°C. |
| T73 | 147-250 | Sentence | denotes | At indicated times, samples were removed from the heating block and cooled on ice to stop the reaction. |
| T74 | 251-469 | Sentence | denotes | Photographs were taken using the color scanner function of an office copy machine and show the red to yellow color change in positive samples. (B) The RT-LAMP reaction product (2.5 μl) was analyzed on a 2% agarose gel. |
| T75 | 470-680 | Sentence | denotes | The typical band pattern of a successful RT-LAMP reaction was visible in the samples with 100 or more SARS-CoV-2 RNA molecules, i.e., in those samples that showed a color change from red to yellow after 30 min. |