
PMC:7574920 / 11130-11869
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7574920","sourcedb":"PMC","sourceid":"7574920","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7574920","text":"Sensitivity of the RT-LAMP assay determined using IVT RNA.\n(A) Defined numbers of in vitro transcribed (IVT) RNA molecules of the SARS-CoV-2 N gene were added to the RT-LAMP reaction and incubated at 65°C. At indicated times, samples were removed from the heating block and cooled on ice to stop the reaction. Photographs were taken using the color scanner function of an office copy machine and show the red to yellow color change in positive samples. (B) The RT-LAMP reaction product (2.5 μl) was analyzed on a 2% agarose gel. The typical band pattern of a successful RT-LAMP reaction was visible in the samples with 100 or more SARS-CoV-2 RNA molecules, i.e., in those samples that showed a color change from red to yellow after 30 min.","divisions":[{"label":"title","span":{"begin":0,"end":58}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T62","span":{"begin":54,"end":57},"obj":"Body_part"},{"id":"T63","span":{"begin":109,"end":122},"obj":"Body_part"},{"id":"T64","span":{"begin":109,"end":112},"obj":"Body_part"},{"id":"T65","span":{"begin":143,"end":147},"obj":"Body_part"},{"id":"T66","span":{"begin":642,"end":655},"obj":"Body_part"},{"id":"T67","span":{"begin":642,"end":645},"obj":"Body_part"}],"attributes":[{"id":"A62","pred":"fma_id","subj":"T62","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A63","pred":"fma_id","subj":"T63","obj":"http://purl.org/sig/ont/fma/fma84126"},{"id":"A64","pred":"fma_id","subj":"T64","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A65","pred":"fma_id","subj":"T65","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A66","pred":"fma_id","subj":"T66","obj":"http://purl.org/sig/ont/fma/fma84126"},{"id":"A67","pred":"fma_id","subj":"T67","obj":"http://purl.org/sig/ont/fma/fma67095"},{"subj":"T62","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T63","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T64","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T65","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T66","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T67","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T48","span":{"begin":130,"end":138},"obj":"Disease"},{"id":"T49","span":{"begin":631,"end":639},"obj":"Disease"}],"attributes":[{"id":"A48","pred":"mondo_id","subj":"T48","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A49","pred":"mondo_id","subj":"T49","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T48","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T49","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T104","span":{"begin":60,"end":61},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T105","span":{"begin":143,"end":147},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T106","span":{"begin":454,"end":455},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T107","span":{"begin":511,"end":514},"obj":"http://purl.obolibrary.org/obo/CLO_0001562"},{"id":"T108","span":{"begin":511,"end":514},"obj":"http://purl.obolibrary.org/obo/CLO_0001563"},{"id":"T109","span":{"begin":557,"end":558},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T110","span":{"begin":692,"end":693},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"attributes":[{"subj":"T104","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T105","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T106","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T107","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T108","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T109","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T110","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T40","span":{"begin":113,"end":122},"obj":"Chemical"},{"id":"T41","span":{"begin":516,"end":523},"obj":"Chemical"},{"id":"T42","span":{"begin":646,"end":655},"obj":"Chemical"}],"attributes":[{"id":"A40","pred":"chebi_id","subj":"T40","obj":"http://purl.obolibrary.org/obo/CHEBI_25367"},{"id":"A41","pred":"chebi_id","subj":"T41","obj":"http://purl.obolibrary.org/obo/CHEBI_2511"},{"id":"A42","pred":"chebi_id","subj":"T42","obj":"http://purl.obolibrary.org/obo/CHEBI_25367"},{"subj":"T40","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T41","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T42","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"151","span":{"begin":141,"end":142},"obj":"Gene"},{"id":"152","span":{"begin":130,"end":140},"obj":"Species"},{"id":"153","span":{"begin":631,"end":641},"obj":"Species"},{"id":"154","span":{"begin":284,"end":287},"obj":"Chemical"},{"id":"155","span":{"begin":516,"end":523},"obj":"Chemical"}],"attributes":[{"id":"A151","pred":"tao:has_database_id","subj":"151","obj":"Gene:43740575"},{"id":"A152","pred":"tao:has_database_id","subj":"152","obj":"Tax:2697049"},{"id":"A153","pred":"tao:has_database_id","subj":"153","obj":"Tax:2697049"},{"id":"A154","pred":"tao:has_database_id","subj":"154","obj":"MESH:D007053"},{"id":"A155","pred":"tao:has_database_id","subj":"155","obj":"MESH:D012685"},{"subj":"151","pred":"source","obj":"LitCovid-PubTator"},{"subj":"152","pred":"source","obj":"LitCovid-PubTator"},{"subj":"153","pred":"source","obj":"LitCovid-PubTator"},{"subj":"154","pred":"source","obj":"LitCovid-PubTator"},{"subj":"155","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T59","span":{"begin":19,"end":21},"obj":"http://purl.obolibrary.org/obo/GO_0001171"},{"id":"T60","span":{"begin":166,"end":168},"obj":"http://purl.obolibrary.org/obo/GO_0001171"},{"id":"T61","span":{"begin":461,"end":463},"obj":"http://purl.obolibrary.org/obo/GO_0001171"},{"id":"T62","span":{"begin":570,"end":572},"obj":"http://purl.obolibrary.org/obo/GO_0001171"}],"attributes":[{"subj":"T59","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T60","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T61","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T62","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T72","span":{"begin":59,"end":205},"obj":"Sentence"},{"id":"T73","span":{"begin":206,"end":309},"obj":"Sentence"},{"id":"T74","span":{"begin":310,"end":528},"obj":"Sentence"},{"id":"T75","span":{"begin":529,"end":739},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T72","pred":"source","obj":"LitCovid-sentences"},{"subj":"T73","pred":"source","obj":"LitCovid-sentences"},{"subj":"T74","pred":"source","obj":"LitCovid-sentences"},{"subj":"T75","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#93d3ec","default":true},{"id":"LitCovid-PD-MONDO","color":"#eceb93"},{"id":"LitCovid-PD-CLO","color":"#d193ec"},{"id":"LitCovid-PD-CHEBI","color":"#93ecb6"},{"id":"LitCovid-PubTator","color":"#ec9c93"},{"id":"LitCovid-PD-GO-BP","color":"#93a3ec"},{"id":"LitCovid-sentences","color":"#bdec93"}]}]}}