PMC:7571312 / 2787-3429 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7571312","sourcedb":"PMC","sourceid":"7571312","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7571312","text":"Lpro inhibitors with antiviral potency.9\nThere are numerous reports of reversible cysteine protease inhibitors, which include aldehydes,10−13 thio- or oxymethylketones,14 cyclic ketones,15 amidomethylketones,16 nitriles,17,18 or various 1,2-dicarbonyl motifs.19,20 The electrophilic carbon of these chemotypes reacts reversibly with the sulfur atom of an active-site cysteine forming a covalently bound tetrahedral complex. Stabilization of this charged protein–ligand transition state by an “oxyanion hole” present in the active site has been observed with certain inhibitor classes by X-ray crystallography and NMR.21,22 A recent report des","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T24320","span":{"begin":82,"end":90},"obj":"Body_part"},{"id":"T27359","span":{"begin":367,"end":375},"obj":"Body_part"},{"id":"T53411","span":{"begin":454,"end":461},"obj":"Body_part"}],"attributes":[{"id":"A82323","pred":"fma_id","subj":"T24320","obj":"http://purl.org/sig/ont/fma/fma82751"},{"id":"A60926","pred":"fma_id","subj":"T27359","obj":"http://purl.org/sig/ont/fma/fma82751"},{"id":"A10236","pred":"fma_id","subj":"T53411","obj":"http://purl.org/sig/ont/fma/fma67257"},{"subj":"T24320","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T27359","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T53411","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T55317","span":{"begin":355,"end":361},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T10101","span":{"begin":384,"end":385},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T44241","span":{"begin":523,"end":529},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T14318","span":{"begin":535,"end":538},"obj":"http://purl.obolibrary.org/obo/CLO_0051582"},{"id":"T44972","span":{"begin":623,"end":624},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"attributes":[{"subj":"T55317","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T10101","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T44241","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T14318","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T44972","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T14","span":{"begin":5,"end":15},"obj":"Chemical"},{"id":"T15","span":{"begin":21,"end":30},"obj":"Chemical"},{"id":"T16","span":{"begin":82,"end":110},"obj":"Chemical"},{"id":"T17","span":{"begin":82,"end":90},"obj":"Chemical"},{"id":"T18","span":{"begin":91,"end":110},"obj":"Chemical"},{"id":"T20","span":{"begin":100,"end":110},"obj":"Chemical"},{"id":"T21","span":{"begin":126,"end":135},"obj":"Chemical"},{"id":"T22","span":{"begin":142,"end":146},"obj":"Chemical"},{"id":"T23","span":{"begin":171,"end":185},"obj":"Chemical"},{"id":"T24","span":{"begin":178,"end":185},"obj":"Chemical"},{"id":"T25","span":{"begin":211,"end":219},"obj":"Chemical"},{"id":"T26","span":{"begin":283,"end":289},"obj":"Chemical"},{"id":"T28","span":{"begin":337,"end":348},"obj":"Chemical"},{"id":"T29","span":{"begin":344,"end":348},"obj":"Chemical"},{"id":"T30","span":{"begin":367,"end":375},"obj":"Chemical"},{"id":"T31","span":{"begin":454,"end":461},"obj":"Chemical"},{"id":"T32","span":{"begin":462,"end":468},"obj":"Chemical"},{"id":"T33","span":{"begin":566,"end":575},"obj":"Chemical"}],"attributes":[{"id":"A14","pred":"chebi_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/CHEBI_35222"},{"id":"A15","pred":"chebi_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/CHEBI_22587"},{"id":"A16","pred":"chebi_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/CHEBI_64152"},{"id":"A17","pred":"chebi_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/CHEBI_15356"},{"id":"A18","pred":"chebi_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/CHEBI_37670"},{"id":"A19","pred":"chebi_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/CHEBI_60258"},{"id":"A20","pred":"chebi_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/CHEBI_35222"},{"id":"A21","pred":"chebi_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/CHEBI_17478"},{"id":"A22","pred":"chebi_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/CHEBI_29830"},{"id":"A23","pred":"chebi_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/CHEBI_3992"},{"id":"A24","pred":"chebi_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/CHEBI_17087"},{"id":"A25","pred":"chebi_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/CHEBI_18379"},{"id":"A26","pred":"chebi_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/CHEBI_27594"},{"id":"A27","pred":"chebi_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/CHEBI_33415"},{"id":"A28","pred":"chebi_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/CHEBI_26833"},{"id":"A29","pred":"chebi_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/CHEBI_33250"},{"id":"A30","pred":"chebi_id","subj":"T30","obj":"http://purl.obolibrary.org/obo/CHEBI_15356"},{"id":"A31","pred":"chebi_id","subj":"T31","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A32","pred":"chebi_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/CHEBI_52214"},{"id":"A33","pred":"chebi_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/CHEBI_35222"},{"subj":"T14","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T15","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T16","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T17","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T18","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T20","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T21","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T25","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T26","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T28","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T29","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T30","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T31","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T32","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T33","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T14","span":{"begin":41,"end":423},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T14","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"103","span":{"begin":82,"end":99},"obj":"Gene"},{"id":"107","span":{"begin":126,"end":135},"obj":"Chemical"},{"id":"108","span":{"begin":138,"end":167},"obj":"Chemical"},{"id":"109","span":{"begin":171,"end":185},"obj":"Chemical"},{"id":"110","span":{"begin":189,"end":207},"obj":"Chemical"},{"id":"111","span":{"begin":211,"end":219},"obj":"Chemical"},{"id":"112","span":{"begin":237,"end":251},"obj":"Chemical"},{"id":"113","span":{"begin":283,"end":289},"obj":"Chemical"},{"id":"114","span":{"begin":337,"end":343},"obj":"Chemical"},{"id":"115","span":{"begin":367,"end":375},"obj":"Chemical"}],"attributes":[{"id":"A103","pred":"tao:has_database_id","subj":"103","obj":"Gene:1508"},{"id":"A107","pred":"tao:has_database_id","subj":"107","obj":"MESH:D000447"},{"id":"A111","pred":"tao:has_database_id","subj":"111","obj":"MESH:D009570"},{"id":"A113","pred":"tao:has_database_id","subj":"113","obj":"MESH:D002244"},{"id":"A114","pred":"tao:has_database_id","subj":"114","obj":"MESH:D013455"},{"id":"A115","pred":"tao:has_database_id","subj":"115","obj":"MESH:D003545"},{"subj":"103","pred":"source","obj":"LitCovid-PubTator"},{"subj":"107","pred":"source","obj":"LitCovid-PubTator"},{"subj":"108","pred":"source","obj":"LitCovid-PubTator"},{"subj":"109","pred":"source","obj":"LitCovid-PubTator"},{"subj":"110","pred":"source","obj":"LitCovid-PubTator"},{"subj":"111","pred":"source","obj":"LitCovid-PubTator"},{"subj":"112","pred":"source","obj":"LitCovid-PubTator"},{"subj":"113","pred":"source","obj":"LitCovid-PubTator"},{"subj":"114","pred":"source","obj":"LitCovid-PubTator"},{"subj":"115","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"2_test","denotations":[{"id":"33054210-32321856-61913443","span":{"begin":39,"end":40},"obj":"32321856"},{"id":"33054210-9667969-61913444","span":{"begin":136,"end":138},"obj":"9667969"},{"id":"33054210-7794931-61913445","span":{"begin":139,"end":141},"obj":"7794931"},{"id":"33054210-12270191-61913446","span":{"begin":186,"end":188},"obj":"12270191"},{"id":"33054210-8230139-61913447","span":{"begin":259,"end":261},"obj":"8230139"},{"id":"33054210-11848867-61913448","span":{"begin":617,"end":619},"obj":"11848867"}],"attributes":[{"subj":"33054210-32321856-61913443","pred":"source","obj":"2_test"},{"subj":"33054210-9667969-61913444","pred":"source","obj":"2_test"},{"subj":"33054210-7794931-61913445","pred":"source","obj":"2_test"},{"subj":"33054210-12270191-61913446","pred":"source","obj":"2_test"},{"subj":"33054210-8230139-61913447","pred":"source","obj":"2_test"},{"subj":"33054210-11848867-61913448","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#d393ec","default":true},{"id":"LitCovid-PD-CLO","color":"#93ecb9"},{"id":"LitCovid-PD-CHEBI","color":"#ec9f93"},{"id":"LitCovid-sentences","color":"#93a1ec"},{"id":"LitCovid-PubTator","color":"#bbec93"},{"id":"2_test","color":"#ec93d5"}]}]}}