PMC:7571312 / 128902-129752 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T42 258-267 Body_part denotes cellulose http://purl.org/sig/ont/fma/fma82748
T43 546-553 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T193 45-48 http://purl.obolibrary.org/obo/CL_0000784 denotes DC2
T194 110-113 http://purl.obolibrary.org/obo/CL_0000784 denotes DC2
T195 157-160 http://purl.obolibrary.org/obo/CLO_0001577 denotes a 3
T196 198-200 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T197 206-210 http://purl.obolibrary.org/obo/CLO_0001387 denotes 4 °C
T198 248-249 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T199 436-439 http://purl.obolibrary.org/obo/CLO_0050644 denotes w/v
T200 574-575 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T201 791-792 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T202 812-813 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T80857 12-14 Chemical denotes PF http://purl.obolibrary.org/obo/CHEBI_74795|http://purl.obolibrary.org/obo/CHEBI_90284
T63926 182-184 Chemical denotes PF http://purl.obolibrary.org/obo/CHEBI_74795|http://purl.obolibrary.org/obo/CHEBI_90284
T62765 258-275 Chemical denotes cellulose acetate http://purl.obolibrary.org/obo/CHEBI_145232
T26566 268-275 Chemical denotes acetate http://purl.obolibrary.org/obo/CHEBI_30089|http://purl.obolibrary.org/obo/CHEBI_47622
T67725 440-443 Chemical denotes PEG http://purl.obolibrary.org/obo/CHEBI_46793
T1016 456-459 Chemical denotes MES http://purl.obolibrary.org/obo/CHEBI_39005|http://purl.obolibrary.org/obo/CHEBI_39010
T39607 476-484 Chemical denotes glycerol http://purl.obolibrary.org/obo/CHEBI_17754
T30005 546-553 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T15551 589-595 Chemical denotes buffer http://purl.obolibrary.org/obo/CHEBI_35225
T1021 755-763 Chemical denotes nitrogen http://purl.obolibrary.org/obo/CHEBI_25555
T68914 819-825 Chemical denotes buffer http://purl.obolibrary.org/obo/CHEBI_35225
T72200 841-849 Chemical denotes glycerol http://purl.obolibrary.org/obo/CHEBI_17754

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T706 0-80 Sentence denotes Crystals of PF-00835231 bound to SARS1/CoV-1 DC2 protease via cocrystallization:
T707 81-211 Sentence denotes Freshly prepared SARS1/CoV-1 DC2 protease at 10.00 mg/mL was incubated with a 3-fold molar excess of PF-00835231 for 18 h at 4 °C.
T708 212-369 Sentence denotes The complex was then passed through a 0.45 μM cellulose acetate spin filter and set up for crystallization using an NT-8 crystallization robot (Formulatrix).
T709 370-596 Sentence denotes Using MRC-2 crystallization plates, wells containing 40 μL of 10% w/v PEG 6000, 0.1 M MES pH 6.0, and 10% glycerol were dispensed, and then sitting drops consisting of 0.15 μL protein were set up against a 0.15 μL well buffer.
T710 597-717 Sentence denotes Crystallization plates were incubated at 21 °C, and rectangular crystals measuring 0.2 × 0.25 × 0.15 mm3 grew overnight.
T711 718-850 Sentence denotes Crystals were flash-frozen in liquid nitrogen after being passed through a cryo consisting of a well buffer containing 20% glycerol.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2277 45-48 Gene denotes DC2 Gene:58505
2278 110-113 Gene denotes DC2 Gene:58505
2279 39-42 Species denotes CoV Tax:11118
2280 104-107 Species denotes CoV Tax:11118
2281 258-275 Chemical denotes cellulose acetate MESH:C005062
2282 440-448 Chemical denotes PEG 6000 MESH:C000595215
2283 456-459 Chemical denotes MES MESH:C004550
2284 476-484 Chemical denotes glycerol MESH:D005990
2285 755-763 Chemical denotes nitrogen MESH:D009584
2286 841-849 Chemical denotes glycerol MESH:D005990
2287 376-381 CellLine denotes MRC-2 CVCL:0440