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PMC:7565665 / 65879-79263 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T435 1604-1615 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T436 1681-1692 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T437 1736-1747 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T438 2482-2489 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T439 2506-2521 Body_part denotes plasma membrane http://purl.org/sig/ont/fma/fma63841
T440 3845-3850 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T441 5678-5689 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T442 5848-5868 Body_part denotes alveolar macrophages http://purl.org/sig/ont/fma/fma83023
T443 6007-6018 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T444 6088-6099 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T445 6390-6403 Body_part denotes autophagosome http://purl.org/sig/ont/fma/fma0326100
T446 6638-6643 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T447 6803-6814 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T448 7999-8003 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T449 8863-8868 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T450 9028-9030 Body_part denotes A1 http://purl.org/sig/ont/fma/fma66592
T451 10310-10314 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T113 3845-3850 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T114 7999-8003 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T115 10310-10314 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T482 117-121 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T483 327-329 Disease denotes CF http://purl.obolibrary.org/obo/MONDO_0009061
T484 551-553 Disease denotes CF http://purl.obolibrary.org/obo/MONDO_0009061
T485 1358-1368 Disease denotes cystinosis http://purl.obolibrary.org/obo/MONDO_0016239
T486 1961-1963 Disease denotes CF http://purl.obolibrary.org/obo/MONDO_0009061
T487 2060-2062 Disease denotes CF http://purl.obolibrary.org/obo/MONDO_0009061
T488 2135-2148 Disease denotes infections in http://purl.obolibrary.org/obo/MONDO_0005550
T489 2989-2991 Disease denotes CF http://purl.obolibrary.org/obo/MONDO_0009061
T490 3127-3140 Disease denotes infections in http://purl.obolibrary.org/obo/MONDO_0005550
T491 3141-3143 Disease denotes CF http://purl.obolibrary.org/obo/MONDO_0009061
T492 3152-3154 Disease denotes CF http://purl.obolibrary.org/obo/MONDO_0009061
T493 3271-3291 Disease denotes respiratory diseases http://purl.obolibrary.org/obo/MONDO_0005087
T494 3412-3422 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T495 3539-3559 Disease denotes respiratory diseases http://purl.obolibrary.org/obo/MONDO_0005087
T496 5114-5124 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T497 5335-5345 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T498 5693-5695 Disease denotes CF http://purl.obolibrary.org/obo/MONDO_0009061
T499 6526-6536 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T500 6617-6619 Disease denotes CF http://purl.obolibrary.org/obo/MONDO_0009061
T501 6628-6630 Disease denotes CF http://purl.obolibrary.org/obo/MONDO_0009061
T502 7027-7037 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T503 7291-7310 Disease denotes respiratory disease http://purl.obolibrary.org/obo/MONDO_0005087
T504 7771-7791 Disease denotes respiratory diseases http://purl.obolibrary.org/obo/MONDO_0005087
T505 7975-7984 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T506 8260-8276 Disease denotes viral infections http://purl.obolibrary.org/obo/MONDO_0005108
T507 8308-8324 Disease denotes viral infections http://purl.obolibrary.org/obo/MONDO_0005108
T508 8608-8618 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T509 8642-8653 Disease denotes common cold http://purl.obolibrary.org/obo/MONDO_0005709
T510 8702-8704 Disease denotes CF http://purl.obolibrary.org/obo/MONDO_0009061
T511 8715-8721 Disease denotes asthma http://purl.obolibrary.org/obo/MONDO_0004979
T512 8736-8740 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T513 9566-9585 Disease denotes respiratory disease http://purl.obolibrary.org/obo/MONDO_0005087
T514 9891-9895 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T515 9916-9937 Disease denotes respiratory infection http://purl.obolibrary.org/obo/MONDO_0024355
T516 9928-9937 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T517 9950-9958 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T518 10094-10102 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T519 10310-10322 Disease denotes lung disease http://purl.obolibrary.org/obo/MONDO_0005275
T520 11143-11151 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T521 11507-11515 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T522 11994-12014 Disease denotes respiratory diseases http://purl.obolibrary.org/obo/MONDO_0005087
T523 12373-12393 Disease denotes bacterial infections http://purl.obolibrary.org/obo/MONDO_0005113
T524 12403-12419 Disease denotes viral infections http://purl.obolibrary.org/obo/MONDO_0005108
T525 12869-12879 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T526 13014-13034 Disease denotes respiratory diseases http://purl.obolibrary.org/obo/MONDO_0005087

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T775 865-869 http://purl.obolibrary.org/obo/PR_000001044 denotes CFTR
T776 929-930 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T777 978-979 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T778 1067-1071 http://purl.obolibrary.org/obo/PR_000001044 denotes CFTR
T779 1097-1098 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T780 1158-1161 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T781 1631-1635 http://purl.obolibrary.org/obo/PR_000001044 denotes CFTR
T782 1664-1668 http://purl.obolibrary.org/obo/PR_000001044 denotes CFTR
T783 1820-1821 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T784 1895-1896 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T785 1930-1934 http://purl.obolibrary.org/obo/PR_000001044 denotes CFTR
T786 2004-2016 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization
T787 2168-2169 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T788 2228-2229 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T789 2444-2448 http://purl.obolibrary.org/obo/PR_000001044 denotes CFTR
T790 2506-2512 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T791 2513-2521 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T792 2600-2604 http://purl.obolibrary.org/obo/PR_000001044 denotes CFTR
T793 2696-2700 http://purl.obolibrary.org/obo/PR_000001044 denotes CFTR
T794 2740-2744 http://purl.obolibrary.org/obo/PR_000001044 denotes CFTR
T795 2908-2909 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T796 3094-3097 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T797 3313-3317 http://purl.obolibrary.org/obo/PR_000001044 denotes CFTR
T798 3712-3720 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T799 3845-3850 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T800 3845-3850 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T801 3932-3936 http://purl.obolibrary.org/obo/PR_000001044 denotes CFTR
T802 3960-3962 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T803 4040-4044 http://purl.obolibrary.org/obo/PR_000001044 denotes CFTR
T804 4246-4251 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T805 4264-4265 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T806 4358-4362 http://purl.obolibrary.org/obo/PR_000001044 denotes CFTR
T807 5017-5025 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T808 5054-5055 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T809 5259-5267 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T810 5526-5534 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T811 5666-5674 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T812 5756-5757 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T813 5795-5796 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T814 5811-5812 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T815 5929-5930 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T816 6060-6064 http://purl.obolibrary.org/obo/PR_000001044 denotes CFTR
T817 6072-6080 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T818 6149-6152 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T819 6258-6262 http://purl.obolibrary.org/obo/PR_000001044 denotes CFTR
T820 6286-6287 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T821 6317-6318 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T822 6339-6340 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T823 6638-6643 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T824 6677-6678 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T825 6893-6897 http://purl.obolibrary.org/obo/PR_000001044 denotes CFTR
T826 6952-6955 http://purl.obolibrary.org/obo/PR_000001343 denotes aim
T827 6967-6971 http://purl.obolibrary.org/obo/PR_000001044 denotes CFTR
T828 7257-7262 http://purl.obolibrary.org/obo/UBERON_0001456 denotes faced
T829 7429-7437 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T830 7520-7521 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T831 7599-7607 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T832 7630-7638 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T833 7697-7704 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Viruses
T834 7714-7715 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T835 7830-7837 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T836 7887-7895 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T837 7906-7914 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T838 8010-8017 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T839 8115-8122 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T840 8153-8160 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T841 8198-8199 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T842 8339-8340 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T843 8372-8377 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T844 8515-8518 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T845 8559-8560 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T846 8661-8662 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T847 8863-8868 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T848 9111-9112 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T849 9271-9274 http://purl.obolibrary.org/obo/CLO_0001195 denotes 219
T850 9457-9458 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T851 9508-9515 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T852 9646-9653 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T853 9728-9735 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T854 9820-9827 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T855 9910-9915 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T856 10031-10043 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T857 10057-10058 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T858 10087-10092 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T859 10105-10108 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T860 10148-10149 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T861 10310-10314 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T862 10310-10314 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T863 10394-10399 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T864 10692-10693 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T865 10943-10944 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T866 10992-10995 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T867 11100-11101 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T868 11157-11160 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T869 11251-11256 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T870 11302-11303 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T871 11332-11337 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T872 11492-11493 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T873 11554-11555 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T874 11614-11615 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T875 11685-11692 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T876 11946-11950 http://purl.obolibrary.org/obo/PR_000001044 denotes CFTR
T877 12240-12248 http://purl.obolibrary.org/obo/NCBITaxon_2 denotes bacteria
T878 12304-12305 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T879 12673-12674 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T880 12761-12762 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T881 13128-13129 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T882 13189-13190 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T883 13343-13344 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T70425 940-948 Chemical denotes solution http://purl.obolibrary.org/obo/CHEBI_75958
T55907 1148-1152 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T147 1290-1300 Chemical denotes cysteamine http://purl.obolibrary.org/obo/CHEBI_17141|http://purl.obolibrary.org/obo/CHEBI_58029
T9752 1302-1312 Chemical denotes Cysteamine http://purl.obolibrary.org/obo/CHEBI_17141
T150 1332-1336 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T60258 1397-1408 Chemical denotes antioxidant http://purl.obolibrary.org/obo/CHEBI_22586
T152 1449-1458 Chemical denotes mucolytic http://purl.obolibrary.org/obo/CHEBI_77034
T153 1547-1557 Chemical denotes cysteamine http://purl.obolibrary.org/obo/CHEBI_17141|http://purl.obolibrary.org/obo/CHEBI_58029
T58412 2170-2174 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T85472 2282-2292 Chemical denotes cysteamine http://purl.obolibrary.org/obo/CHEBI_17141|http://purl.obolibrary.org/obo/CHEBI_58029
T158 2379-2389 Chemical denotes cysteamine http://purl.obolibrary.org/obo/CHEBI_17141|http://purl.obolibrary.org/obo/CHEBI_58029
T55491 2482-2489 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T7519 2612-2622 Chemical denotes cysteamine http://purl.obolibrary.org/obo/CHEBI_17141|http://purl.obolibrary.org/obo/CHEBI_58029
T44863 2872-2882 Chemical denotes cysteamine http://purl.obolibrary.org/obo/CHEBI_17141|http://purl.obolibrary.org/obo/CHEBI_58029
T28868 3006-3015 Chemical denotes dendrimer http://purl.obolibrary.org/obo/CHEBI_51338|http://purl.obolibrary.org/obo/CHEBI_61483
T31667 3367-3378 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281
T19153 3407-3410 Chemical denotes MDR http://purl.obolibrary.org/obo/CHEBI_53218
T4318 3636-3645 Chemical denotes rapamycin http://purl.obolibrary.org/obo/CHEBI_9168
T84057 3786-3793 Chemical denotes fisetin http://purl.obolibrary.org/obo/CHEBI_42567
T42004 3824-3835 Chemical denotes antioxidant http://purl.obolibrary.org/obo/CHEBI_22586
T15814 4481-4492 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281
T63851 4636-4638 Chemical denotes IV http://purl.obolibrary.org/obo/CHEBI_74327
T174 4640-4651 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281
T66577 4835-4837 Chemical denotes IV http://purl.obolibrary.org/obo/CHEBI_74327
T99338 4838-4849 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281
T70909 4932-4943 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281
T83059 5037-5040 Chemical denotes MDR http://purl.obolibrary.org/obo/CHEBI_53218
T72009 5236-5239 Chemical denotes MDR http://purl.obolibrary.org/obo/CHEBI_53218
T3847 5280-5283 Chemical denotes MDR http://purl.obolibrary.org/obo/CHEBI_53218
T45661 5299-5310 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281
T7261 5366-5377 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281
T16389 5522-5525 Chemical denotes MDR http://purl.obolibrary.org/obo/CHEBI_53218
T41546 5601-5611 Chemical denotes cysteamine http://purl.obolibrary.org/obo/CHEBI_17141|http://purl.obolibrary.org/obo/CHEBI_58029
T46239 5662-5665 Chemical denotes MDR http://purl.obolibrary.org/obo/CHEBI_53218
T36363 5882-5892 Chemical denotes cysteamine http://purl.obolibrary.org/obo/CHEBI_17141|http://purl.obolibrary.org/obo/CHEBI_58029
T73018 5988-5998 Chemical denotes cysteamine http://purl.obolibrary.org/obo/CHEBI_17141|http://purl.obolibrary.org/obo/CHEBI_58029
T1111 6138-6148 Chemical denotes cysteamine http://purl.obolibrary.org/obo/CHEBI_17141|http://purl.obolibrary.org/obo/CHEBI_58029
T1375 6194-6197 Chemical denotes MDR http://purl.obolibrary.org/obo/CHEBI_53218
T41711 6347-6364 Chemical denotes autophagy inducer http://purl.obolibrary.org/obo/CHEBI_138880
T79487 6415-6417 Chemical denotes AR http://purl.obolibrary.org/obo/CHEBI_137238
T42919 6472-6474 Chemical denotes AR http://purl.obolibrary.org/obo/CHEBI_137238
T65482 6547-6558 Chemical denotes methicillin http://purl.obolibrary.org/obo/CHEBI_6827
T79994 6693-6695 Chemical denotes AR http://purl.obolibrary.org/obo/CHEBI_137238
T70610 6719-6730 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281
T48393 7023-7026 Chemical denotes MDR http://purl.obolibrary.org/obo/CHEBI_53218
T91062 7092-7097 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T29551 7342-7347 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T35255 7425-7428 Chemical denotes MDR http://purl.obolibrary.org/obo/CHEBI_53218
T204 7531-7542 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281
T11966 7595-7598 Chemical denotes MDR http://purl.obolibrary.org/obo/CHEBI_53218
T206 7928-7938 Chemical denotes antibiotic http://purl.obolibrary.org/obo/CHEBI_33281
T99783 8077-8086 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T208 8435-8444 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T57643 8547-8557 Chemical denotes budesonide http://purl.obolibrary.org/obo/CHEBI_3207
T86220 8561-8575 Chemical denotes corticosteroid http://purl.obolibrary.org/obo/CHEBI_50858
T39526 8800-8810 Chemical denotes budesonide http://purl.obolibrary.org/obo/CHEBI_3207
T39935 8909-8918 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T213 8929-8939 Chemical denotes budesonide http://purl.obolibrary.org/obo/CHEBI_3207
T91389 9000-9011 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T99571 9016-9030 Chemical denotes bafilomycin A1 http://purl.obolibrary.org/obo/CHEBI_22689
T87751 9062-9071 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T15725 9082-9092 Chemical denotes budesonide http://purl.obolibrary.org/obo/CHEBI_3207
T83295 9134-9147 Chemical denotes dexamethasone http://purl.obolibrary.org/obo/CHEBI_41879
T78343 9157-9171 Chemical denotes corticosteroid http://purl.obolibrary.org/obo/CHEBI_50858
T7124 9387-9392 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T221 10184-10194 Chemical denotes antivirals http://purl.obolibrary.org/obo/CHEBI_22587
T75469 10215-10226 Chemical denotes favipiravir http://purl.obolibrary.org/obo/CHEBI_134722
T223 10796-10801 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T224 11020-11030 Chemical denotes spermidine http://purl.obolibrary.org/obo/CHEBI_16610|http://purl.obolibrary.org/obo/CHEBI_57834
T226 11035-11052 Chemical denotes autophagy inducer http://purl.obolibrary.org/obo/CHEBI_138880
T28856 11055-11062 Chemical denotes MK-2206 http://purl.obolibrary.org/obo/CHEBI_67271
T55676 11055-11057 Chemical denotes MK http://purl.obolibrary.org/obo/CHEBI_74706
T27210 11071-11080 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222
T230 11111-11121 Chemical denotes stabilizer http://purl.obolibrary.org/obo/CHEBI_77966
T231 11219-11228 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T63795 11381-11386 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T233 11531-11541 Chemical denotes antivirals http://purl.obolibrary.org/obo/CHEBI_22587
T89564 11714-11724 Chemical denotes antivirals http://purl.obolibrary.org/obo/CHEBI_22587
T235 11904-11909 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T11038 12177-12182 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T237 12236-12239 Chemical denotes MDR http://purl.obolibrary.org/obo/CHEBI_53218
T238 12289-12299 Chemical denotes antivirals http://purl.obolibrary.org/obo/CHEBI_22587
T75877 12369-12372 Chemical denotes MDR http://purl.obolibrary.org/obo/CHEBI_53218
T20047 12522-12527 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T57792 12747-12756 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T52731 12865-12868 Chemical denotes MDR http://purl.obolibrary.org/obo/CHEBI_53218
T40974 12961-12972 Chemical denotes antibiotics http://purl.obolibrary.org/obo/CHEBI_33281
T81365 12977-12987 Chemical denotes antivirals http://purl.obolibrary.org/obo/CHEBI_22587
T4284 13110-13115 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1646 865-869 Gene denotes CFTR Gene:1080
1647 103-111 Species denotes patients Tax:9606
1648 301-308 Species denotes patient Tax:9606
1649 476-484 Species denotes patients Tax:9606
1650 759-767 Species denotes patients Tax:9606
1651 117-121 Disease denotes COPD MESH:D029424
1668 1067-1071 Gene denotes CFTR Gene:1080
1669 1631-1635 Gene denotes CFTR Gene:1080
1670 1664-1668 Gene denotes CFTR Gene:1080
1671 1822-1830 Gene denotes Beclin-1 Gene:8678
1672 1930-1934 Gene denotes CFTR Gene:1080
1673 1577-1590 Species denotes P. aeruginosa Tax:287
1674 1802-1815 Species denotes P. aeruginosa Tax:287
1675 1964-1972 Species denotes patients Tax:9606
1676 2043-2056 Species denotes P. aeruginosa Tax:287
1677 2063-2071 Species denotes patients Tax:9606
1678 1290-1300 Chemical denotes cysteamine MESH:D003543
1679 1302-1312 Chemical denotes Cysteamine MESH:D003543
1680 1547-1557 Chemical denotes cysteamine MESH:D003543
1681 1358-1368 Disease denotes cystinosis MESH:D003554
1682 1993-2016 Disease denotes aeruginosa colonization MESH:D003110
1683 2124-2145 Disease denotes aeruginosa infections MESH:D011552
1699 2444-2448 Gene denotes CFTR Gene:1080
1700 2600-2604 Gene denotes CFTR Gene:1080
1701 2696-2700 Gene denotes CFTR Gene:1080
1702 2740-2744 Gene denotes CFTR Gene:1080
1703 2825-2838 Species denotes P. aeruginosa Tax:287
1704 3070-3083 Species denotes P. aeruginosa Tax:287
1705 3155-3163 Species denotes patients Tax:9606
1706 2282-2292 Chemical denotes cysteamine MESH:D003543
1707 2379-2389 Chemical denotes cysteamine MESH:D003543
1708 2872-2882 Chemical denotes cysteamine MESH:D003543
1709 2993-3003 Chemical denotes Cysteamine MESH:D003543
1710 3127-3137 Disease denotes infections MESH:D007239
1711 3271-3291 Disease denotes respiratory diseases MESH:D012140
1712 3313-3329 Disease denotes CFTR dysfunction MESH:D009461
1713 3412-3422 Disease denotes infections MESH:D007239
1720 3932-3936 Gene denotes CFTR Gene:1080
1721 4040-4044 Gene denotes CFTR Gene:1080
1722 4246-4251 Species denotes human Tax:9606
1723 3636-3645 Chemical denotes rapamycin MESH:D020123
1724 3786-3793 Chemical denotes fisetin MESH:C017875
1725 3539-3559 Disease denotes respiratory diseases MESH:D012140
1734 4358-4362 Gene denotes CFTR Gene:1080
1735 4534-4542 Species denotes patients Tax:9606
1736 4895-4903 Species denotes patients Tax:9606
1737 4960-4967 Species denotes patient Tax:9606
1738 4975-4982 Species denotes patient Tax:9606
1739 5078-5086 Species denotes patients Tax:9606
1740 5114-5124 Disease denotes infections MESH:D007239
1741 5335-5345 Disease denotes infections MESH:D007239
1752 6060-6064 Gene denotes CFTR Gene:1080
1753 6258-6262 Gene denotes CFTR Gene:1080
1754 5696-5704 Species denotes patients Tax:9606
1755 5795-5809 Species denotes B. cenocepacia Tax:95486
1756 5811-5825 Species denotes B. multivorans Tax:87883
1757 5831-5844 Species denotes P. aeruginosa Tax:287
1758 5601-5611 Chemical denotes cysteamine MESH:D003543
1759 5882-5892 Chemical denotes cysteamine MESH:D003543
1760 5988-5998 Chemical denotes cysteamine MESH:D003543
1761 6138-6148 Chemical denotes cysteamine MESH:D003543
1771 6893-6897 Gene denotes CFTR Gene:1080
1772 6569-6590 Species denotes Staphylococcus aureus Tax:1280
1773 6595-6608 Species denotes P. aeruginosa Tax:287
1774 6677-6691 Species denotes B. cenocepacia Tax:95486
1775 6415-6420 Chemical denotes AR-13
1776 6472-6474 Chemical denotes AR MESH:D001128
1777 6547-6558 Chemical denotes methicillin MESH:D008712
1778 6693-6698 Chemical denotes AR-13
1779 6794-6802 Disease denotes infected MESH:D007239
1783 6967-6971 Gene denotes CFTR Gene:1080
1784 7027-7037 Disease denotes infections MESH:D007239
1785 7291-7310 Disease denotes respiratory disease MESH:D012140
1791 7749-7757 Species denotes patients Tax:9606
1792 7771-7791 Disease denotes respiratory diseases MESH:D012140
1793 7975-7984 Disease denotes infection MESH:D007239
1794 8260-8276 Disease denotes viral infections MESH:D001102
1795 8308-8324 Disease denotes viral infections MESH:D001102
1814 8620-8630 Species denotes Rhinovirus Tax:12059
1815 8839-8849 Species denotes rhinovirus Tax:12059
1816 8853-8861 Species denotes patients Tax:9606
1817 9223-9233 Species denotes rhinovirus Tax:12059
1818 9351-9361 Species denotes rhinovirus Tax:12059
1819 9544-9552 Species denotes patients Tax:9606
1820 8547-8557 Chemical denotes budesonide MESH:D019819
1821 8800-8810 Chemical denotes budesonide MESH:D019819
1822 8929-8939 Chemical denotes budesonide MESH:D019819
1823 9000-9011 Chemical denotes chloroquine MESH:D002738
1824 9016-9030 Chemical denotes bafilomycin A1 MESH:C040929
1825 9082-9092 Chemical denotes budesonide MESH:D019819
1826 9134-9147 Chemical denotes dexamethasone MESH:D003907
1827 8597-8618 Disease denotes rhinovirus infections MESH:D007239
1828 8649-8653 Disease denotes cold MESH:D000067390
1829 8715-8721 Disease denotes asthma MESH:D001249
1830 8736-8740 Disease denotes COPD MESH:D029424
1831 9566-9585 Disease denotes respiratory disease MESH:D012140
1850 11067-11070 Gene denotes AKT Gene:207
1851 11102-11110 Gene denotes Beclin-1 Gene:8678
1852 9873-9890 Species denotes novel coronavirus Tax:2697049
1853 9891-9900 Species denotes SARS-CoV2 Tax:2697049
1854 9910-9915 Species denotes human Tax:9606
1855 10094-10104 Species denotes SARS-CoV-2 Tax:2697049
1856 10203-10213 Chemical denotes remdesevir
1857 10215-10226 Chemical denotes favipiravir MESH:C462182
1858 11020-11030 Chemical denotes spermidine MESH:D013095
1859 11055-11062 Chemical denotes MK-2206 MESH:C548887
1860 11087-11098 Chemical denotes niclosamide MESH:D009534
1861 9916-9937 Disease denotes respiratory infection MESH:D012141
1862 9950-9958 Disease denotes COVID-19 MESH:C000657245
1863 10125-10131 Disease denotes deaths MESH:D003643
1864 10310-10322 Disease denotes lung disease MESH:D008171
1865 10522-10531 Disease denotes mortality MESH:D003643
1866 11143-11151 Disease denotes COVID-19 MESH:C000657245
1867 11507-11515 Disease denotes COVID-19 MESH:C000657245
1879 11946-11950 Gene denotes CFTR Gene:1080
1880 12084-12092 Species denotes patients Tax:9606
1881 13375-13383 Species denotes patients Tax:9606
1882 13276-13287 Species denotes respiratory Tax:12814
1883 11994-12014 Disease denotes respiratory diseases MESH:D012140
1884 12070-12079 Disease denotes mortality MESH:D003643
1885 12373-12393 Disease denotes bacterial infections MESH:D001424
1886 12403-12419 Disease denotes viral infections MESH:D001102
1887 12869-12879 Disease denotes infections MESH:D007239
1888 13014-13034 Disease denotes respiratory diseases MESH:D012140
1889 13362-13371 Disease denotes mortality MESH:D003643

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T213 117-121 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T214 8248-8276 Phenotype denotes severity of viral infections http://purl.obolibrary.org/obo/HP_0031691
T215 8715-8721 Phenotype denotes asthma http://purl.obolibrary.org/obo/HP_0002099
T216 8736-8740 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T217 9916-9937 Phenotype denotes respiratory infection http://purl.obolibrary.org/obo/HP_0011947
T218 10310-10322 Phenotype denotes lung disease http://purl.obolibrary.org/obo/HP_0002088

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T884 820-829 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T885 820-829 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T886 865-869 http://purl.obolibrary.org/obo/GO_0005260 denotes CFTR
T887 870-879 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T888 870-879 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T889 1067-1071 http://purl.obolibrary.org/obo/GO_0005260 denotes CFTR
T890 1072-1081 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T891 1072-1081 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T892 1191-1200 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T893 1191-1200 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T894 1429-1438 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T895 1429-1438 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T896 1631-1635 http://purl.obolibrary.org/obo/GO_0005260 denotes CFTR
T897 1664-1668 http://purl.obolibrary.org/obo/GO_0005260 denotes CFTR
T898 1858-1867 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T899 1858-1867 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T900 1930-1934 http://purl.obolibrary.org/obo/GO_0005260 denotes CFTR
T901 1939-1948 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T902 1939-1948 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T903 2193-2208 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T904 2444-2448 http://purl.obolibrary.org/obo/GO_0005260 denotes CFTR
T905 2600-2604 http://purl.obolibrary.org/obo/GO_0005260 denotes CFTR
T906 2649-2658 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T907 2649-2658 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T908 2696-2700 http://purl.obolibrary.org/obo/GO_0005260 denotes CFTR
T909 2740-2744 http://purl.obolibrary.org/obo/GO_0005260 denotes CFTR
T910 2745-2754 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T911 2745-2754 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T912 3313-3317 http://purl.obolibrary.org/obo/GO_0005260 denotes CFTR
T913 3491-3500 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T914 3491-3500 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T915 3657-3666 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T916 3657-3666 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T917 3867-3876 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T918 3867-3876 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T919 3932-3936 http://purl.obolibrary.org/obo/GO_0005260 denotes CFTR
T920 3937-3946 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T921 3937-3946 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T922 3990-3999 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T923 3990-3999 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T924 4040-4044 http://purl.obolibrary.org/obo/GO_0005260 denotes CFTR
T925 4045-4054 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T926 4045-4054 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T927 4358-4362 http://purl.obolibrary.org/obo/GO_0005260 denotes CFTR
T928 4363-4372 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T929 4363-4372 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T930 5487-5496 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T931 5487-5496 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T932 5958-5967 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T933 5958-5967 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T934 6060-6064 http://purl.obolibrary.org/obo/GO_0005260 denotes CFTR
T935 6258-6262 http://purl.obolibrary.org/obo/GO_0005260 denotes CFTR
T936 6263-6272 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T937 6263-6272 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T938 6347-6356 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T939 6347-6356 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T940 6390-6413 http://purl.obolibrary.org/obo/GO_0000045 denotes autophagosome formation
T941 6404-6413 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T942 6893-6897 http://purl.obolibrary.org/obo/GO_0005260 denotes CFTR
T943 6898-6907 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T944 6898-6907 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T945 6967-6971 http://purl.obolibrary.org/obo/GO_0005260 denotes CFTR
T946 6972-6981 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T947 6972-6981 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T948 7391-7400 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T949 7391-7400 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T950 7477-7492 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T951 8165-8174 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T952 8165-8174 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T953 8260-8276 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections
T954 8308-8324 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections
T955 8391-8400 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T956 8391-8400 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T957 8951-8960 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T958 8951-8960 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T959 8974-8983 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T960 8974-8983 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T961 9242-9251 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T962 9242-9251 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T963 9368-9377 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T964 9368-9377 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T965 9432-9441 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T966 9432-9441 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T967 9605-9614 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T968 9605-9614 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T969 9622-9637 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T970 9779-9788 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T971 9779-9788 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T972 10071-10092 http://purl.obolibrary.org/obo/GO_0009615 denotes response to the virus
T973 10768-10777 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T974 10768-10777 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T975 10921-10932 http://purl.obolibrary.org/obo/GO_0006412 denotes translation
T976 11035-11044 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T977 11035-11044 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T978 11270-11279 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T979 11270-11279 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T980 11397-11406 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T981 11397-11406 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T982 11451-11460 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T983 11451-11460 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T984 11819-11828 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T985 11819-11828 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T986 11885-11894 http://purl.obolibrary.org/obo/GO_0016236 denotes Autophagy
T987 11885-11894 http://purl.obolibrary.org/obo/GO_0006914 denotes Autophagy
T988 11946-11950 http://purl.obolibrary.org/obo/GO_0005260 denotes CFTR
T989 11951-11960 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T990 11951-11960 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T991 12158-12167 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T992 12158-12167 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T993 12317-12326 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T994 12317-12326 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T995 12403-12419 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections
T996 12497-12506 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T997 12497-12506 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T998 12581-12592 http://purl.obolibrary.org/obo/GO_0006412 denotes translation
T999 12617-12626 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T1000 12617-12626 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T1001 12786-12795 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T1002 12786-12795 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy
T1003 13089-13098 http://purl.obolibrary.org/obo/GO_0016236 denotes autophagy
T1004 13089-13098 http://purl.obolibrary.org/obo/GO_0006914 denotes autophagy

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T340 0-2 Sentence denotes 9.
T341 3-14 Sentence denotes Perspective
T342 15-98 Sentence denotes The burden of exacerbations on the health care system is substantial [1,3,177,210].
T343 99-315 Sentence denotes For patients with COPD in the United States, the average annual health care costs associated with their condition was estimated to be USD 9981; meanwhile, the average cost to society was USD 30,826 per patient [211].
T344 316-489 Sentence denotes Similarly, CF exacerbations were demonstrated to cost Medicaid on average between USD 44,589 and USD 116,169 annually with the costs increasing with the age of patients [2].
T345 490-589 Sentence denotes Another study found that the average cost per episode of all CF exacerbations was USD 12,784 [176].
T346 590-802 Sentence denotes As such, investigating new methods to prevent recurrent exacerbations is necessary to lower the burden on the health care system while improving the quality of life for patients with chronic pulmonary conditions.
T347 803-974 Sentence denotes The potential of autophagy augmenting therapeutics to correct CFTR-autophagy dysfunction and resulting exacerbations provides a possible solution to this issue (Figure 2).
T348 975-1143 Sentence denotes As a proof of concept, numerous recent studies have demonstrated the potential of targeting CFTR-autophagy dysfunction as a method for reducing recurrent exacerbations.
T349 1144-1301 Sentence denotes One drug that has shown promise in alleviating autophagy impairment to provide possible therapeutic benefits in the treatment of exacerbations is cysteamine.
T350 1302-1503 Sentence denotes Cysteamine is an FDA approved drug for the treatment of cystinosis; however, it also possesses antioxidant, anti-inflammatory, autophagy-inducing, mucolytic, and anti-bacterial properties [58,205,207].
T351 1504-1698 Sentence denotes Recently, Ferrari et al. demonstrated that cysteamine could re-establish P. aeruginosa clearance in macrophages with the ΔF508-CFTR deletion by salvaging ΔF508-CFTR function in macrophages [58].
T352 1699-1881 Sentence denotes This restoration of function allowed macrophages to both increase the internalization and clearance of P. aeruginosa via a Beclin-1-mediated initiation of the autophagy pathway [58].
T353 1882-2017 Sentence denotes This reveals a possible therapy to restore both CFTR and autophagy function in CF patients that could limit P. aeruginosa colonization.
T354 2018-2263 Sentence denotes An improved clearance of P. aeruginosa in CF patients is especially important due to the prevalence of P. aeruginosa infections in exacerbations, and a drug that improves the immune response in this way offers a method to decrease exacerbations.
T355 2264-2334 Sentence denotes Studies exploring cysteamine-dendrimers have revealed similar results.
T356 2335-2542 Sentence denotes Two of our recent studies demonstrated that cysteamine-based dendrimers were able to not only decrease ΔF508-CFTR aggregation, but also rescue the protein to increase the plasma membrane expression [45,149].
T357 2543-2719 Sentence denotes Moreover, these investigations showed that this recue of CFTR by the cysteamine-dendrimers alleviated the autophagy impairment associated with the ΔF508-CFTR mutation [45,149].
T358 2720-2864 Sentence denotes This alleviation of CFTR-autophagy impairment was further shown to increase the clearance and killing of P. aeruginosa in both studies [45,149].
T359 2865-2992 Sentence denotes Hence, cysteamine-based dendrimers provide a therapeutic option in the treatment of both acute and chronic exacerbations in CF.
T360 2993-3195 Sentence denotes Cysteamine’s dendrimer-based formulation also proved beneficial for clearing P. aeruginosa, and thus has potential for treating other infections in CF and non-CF patients who are prone to exacerbations.
T361 3196-3434 Sentence denotes The added advantage of this intervention strategy is that exacerbations in respiratory diseases including those with CFTR dysfunction may be treated and prevented without antibiotics, where multidrug-resistant (MDR) infections are common.
T362 3435-3598 Sentence denotes Further studies into the therapeutic potential of other autophagy inducers for exacerbations in chronic respiratory diseases have shown promise as well (Figure 2).
T363 3599-3774 Sentence denotes These studies have demonstrated that rapamycin can induce autophagy and aid in the killing of different types of bacteria that are known to cause exacerbations [6,44,153,202].
T364 3775-3964 Sentence denotes Similarly, fisetin, which is an over the counter antioxidant used for brain health, induces autophagy [34,43] to improve bacterial clearance by ameliorating CFTR-autophagy dysfunction [35].
T365 3965-4086 Sentence denotes Thus, the use of various autophagy inducers shows promise in restoring the CFTR-autophagy pathway to treat exacerbations.
T366 4087-4303 Sentence denotes However, future studies and clinical trials need to be conducted to evaluate and standardize the safety and efficacy of these treatments to provide benefit in human subjects as a part of ongoing clinical development.
T367 4304-4513 Sentence denotes Another reason to explore treatments that restore the CFTR-autophagy function to treat exacerbations is that the current first-line treatment for exacerbations usually includes antibiotics [4,173,210,212,213].
T368 4514-4667 Sentence denotes In situations where patients experience severe exacerbations, they are often hospitalized and given powerful intravenous (IV) antibiotics [4,31,173,176].
T369 4668-4761 Sentence denotes This is part of what plays into the exorbitant costs associated with recurrent exacerbations.
T370 4762-4910 Sentence denotes When looking specifically at exacerbations requiring hospitalization and IV-antibiotics, the cost is USD 36,319 per exacerbation for patients [176].
T371 4911-5162 Sentence denotes This frequent use of antibiotics in both the out-patient and in-patient treatment of exacerbations causes bacteria to develop MDR, which poses a significant issue for patients as the treatment of future infections becomes more difficult [151,214,215].
T372 5163-5250 Sentence denotes In fact, many pathogens that cause exacerbations have been found to have MDR [214,215].
T373 5251-5409 Sentence denotes As more bacteria demonstrate MDR, more powerful antibiotics are needed to fight off infections, but these powerful antibiotics can have negative side effects.
T374 5410-5557 Sentence denotes As such, researchers have begun investigating the potential of targeting the autophagy pathway to fight off the MDR bacteria causing exacerbations.
T375 5558-5711 Sentence denotes One recent study explored the potential of cysteamine to improve the clearance and killing of different MDR bacteria by macrophages in CF patients [206].
T376 5712-5899 Sentence denotes The researchers demonstrated that there was a significantly increased clearance of B. cenocepacia, B. multivorans, and P. aeruginosa by alveolar macrophages treated with cysteamine [206].
T377 5900-6106 Sentence denotes Further exploration revealed a decrease in the markers of autophagy impairment in these cysteamine-treated macrophages, along with an increase in expression of CFTR on the membrane of the macrophages [206].
T378 6107-6285 Sentence denotes Thus, it can be concluded that cysteamine has the ability to promote host clearance of MDR pathogens in pulmonary exacerbations via the alleviation of CFTR-autophagy dysfunction.
T379 6286-6421 Sentence denotes A similar finding was found in a study that explored a novel autophagy inducer that works by initiating autophagosome formation, AR-13.
T380 6422-6650 Sentence denotes The investigators in this study demonstrated that AR-13 on its own was able to significantly reduce the infectious burden of methicillin-resistant Staphylococcus aureus and P. aeruginosa in both CF and non-CF immune cells [152].
T381 6651-6821 Sentence denotes Meanwhile, in the case of B. cenocepacia, AR-13 in combination with antibiotics was able to significantly improve the bacterial clearance from infected macrophages [152].
T382 6822-6926 Sentence denotes This improved bacterial clearance was attributed to the alleviation of CFTR-autophagy dysfunction [152].
T383 6927-7063 Sentence denotes Hence, therapeutics that aim to restore CFTR-autophagy function demonstrate promise in fighting MDR infections that cause exacerbations.
T384 7064-7311 Sentence denotes If clinical trials of these drugs were to show promise, they may decrease the length of hospitalization and recurrence of exacerbations to decrease both the costs and decreased quality of life faced by individuals with chronic respiratory disease.
T385 7312-7438 Sentence denotes Moreover, the fact that these drugs have been demonstrated to work by inducing autophagy is critical in fighting MDR bacteria.
T386 7439-7620 Sentence denotes Since the mechanism involves the host immune response and there would be less of a need for antibiotics, there is the possibility of decreased incidence of MDR bacteria development.
T387 7621-7696 Sentence denotes However, bacteria are not the only pathogens responsible for exacerbations.
T388 7697-7803 Sentence denotes Viruses are also a common cause of exacerbations in patients with chronic respiratory diseases [4,31,173].
T389 7804-7896 Sentence denotes However, the treatment of viruses is significantly different than the treatment of bacteria.
T390 7897-7985 Sentence denotes For most bacteria, there is an antibiotic that can be prescribed to fight the infection.
T391 7986-8123 Sentence denotes On the other hand, most viruses tend to be treated with supportive care due to the lack of antiviral therapies for many types of viruses.
T392 8124-8367 Sentence denotes As such, being able to clear viruses via autophagy/Tvirophagy may provide a unique therapeutic benefit in both reducing the severity of viral infections and decreasing the duration of viral infections, resulting in a decrease in exacerbations.
T393 8368-8497 Sentence denotes The focus on targeting autophagy to treat exacerbations in lieu of antiviral medications is limited but is gaining more interest.
T394 8498-8619 Sentence denotes One recent study has demonstrated the promise of budesonide, a corticosteroid, in the treatment of rhinovirus infections.
T395 8620-8750 Sentence denotes Rhinovirus causes the common cold and is a common viral cause of exacerbations in CF [32,175], asthma [32,216], and COPD [32,217].
T396 8751-8875 Sentence denotes In this study, researchers found that intranasal budesonide decreased the viral load of rhinovirus in patients’ lungs [218].
T397 8876-9099 Sentence denotes The investigators determined the antiviral effect of budesonide was due to autophagy induction as autophagy inhibition with chloroquine and bafilomycin A1 both significantly reduced the antiviral effect of budesonide [218].
T398 9100-9276 Sentence denotes Similarly, a study performed with dexamethasone, another corticosteroid, demonstrated that it is an effective treatment of rhinovirus through autophagy induction as well [219].
T399 9277-9393 Sentence denotes Thus, there is promise in treating and preventing exacerbations caused by rhinovirus using autophagy-inducing drugs.
T400 9394-9683 Sentence denotes In theory, targeting the induction of autophagy should provide a therapeutic mechanism for the treatment of other viruses that cause exacerbations in patients with chronic respiratory disease due to the role of autophagy in the immune response in many viruses, yet more research is needed.
T401 9684-9855 Sentence denotes In addition to showing promise in targeting viruses that cause exacerbations, the induction of autophagy may also aid in fighting novel viruses that can lead to pandemics.
T402 9856-9998 Sentence denotes For example, the novel coronavirus SARS-CoV2-mediated human respiratory infection, leading to COVID-19, was first reported in late 2019 [137].
T403 9999-10093 Sentence denotes By March 2020, the World Health Organization had declared a pandemic in response to the virus.
T404 10094-10353 Sentence denotes SARS-CoV-2 has caused numerous deaths, due to lack of a potent effective treatment, where antivirals such as remdesevir, favipiravir, etc., although minimally effective in reducing the hospitalization time of severe lung disease subjects, are in short supply.
T405 10354-10673 Sentence denotes Moreover due to the novel nature of the virus, susceptible population groups and aerosol-based rapid transmission, we see variations in the control of transmission and mortality between different countries, where mitigation measures are dependent on socio-economic, health care disparities and political will [137,220].
T406 10674-10933 Sentence denotes As such, there is a need to rapidly deliver on potent treatments in addition to vaccines, and autophagy augmentation with drugs that are FDA-approved for other conditions (Figure 2), provide significant potential for clinical validation and rapid translation.
T407 10934-11263 Sentence denotes In fact, a recent pre-print study that we mentioned above has investigated the use of spermidine (an autophagy inducer), MK-2206 (an AKT inhibitor), and niclosamide (a Beclin-1 stabilizer) in the treatment of COVID-19, and has been found to demonstrate some therapeutic benefits as an antiviral treatment against the virus [138].
T408 11264-11338 Sentence denotes Thus, autophagy induction may provide a beneficial treatment of the virus.
T409 11339-11426 Sentence denotes However, further investigation into these drugs and other autophagy inducers is needed.
T410 11427-11581 Sentence denotes Still, the mechanism of autophagy induction may prove crucial as a treatment of COVID-19 over classical antivirals and provide a tool to end the pandemic.
T411 11582-11780 Sentence denotes This mechanism may also prevent a future epidemic or pandemic by offering possible treatments to novel viruses without vaccines and antivirals that take significant development time for each strain.
T412 11781-11884 Sentence denotes Therefore, targeting and inducing the autophagy pathway is an area of tremendous clinical significance.
T413 11885-12147 Sentence denotes Autophagy-inducing drugs may be necessary for overcoming the CFTR-autophagy impairment found in many chronic respiratory diseases to prevent exacerbations and improve the morbidity and mortality for patients while cutting health care costs for these individuals.
T414 12148-12300 Sentence denotes Moreover, autophagy-inducing drugs offer the ability to fight pathogens without causing MDR bacteria and the need to develop strain specific antivirals.
T415 12301-12593 Sentence denotes As a result, an autophagy induction intervention strategy to handle MDR bacterial infections or novel viral infections provides significant benefits in terms of controlling exacerbations, whereas autophagy induction with drugs currently approved for other conditions allows rapid translation.
T416 12594-12772 Sentence denotes Moreover, the proposed autophagy augmenting therapeutic strategy also provides a possible treatment in situations where it is not possible to develop an antiviral for a pathogen.
T417 12773-12880 Sentence denotes Furthermore, autophagy induction also can offer an effective way to treat current recurring MDR infections.
T418 12881-13160 Sentence denotes Hence, future clinical studies need to expand their scope beyond the horizon of antibiotics and antivirals for the treatment of many respiratory diseases and begin investigating the therapeutic benefits that autophagy augmenting drugs may have in a myriad of clinical situations.
T419 13161-13384 Sentence denotes In doing so, we can achieve a significant reduction in the overwhelming health care costs and resources needed for respiratory exacerbations while improving the quality of life with a reduction in the mortality of patients.