
PMC:7565665 / 36390-38536
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7565665","sourcedb":"PMC","sourceid":"7565665","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7565665","text":"4.5. Autophagy Defects in Cystic Fibrosis\nCystic fibrosis is a chronic obstructive lung disease which is marked by recurrent infections, chronic inflammatory-oxidative stress, and mucus overproduction that contributes to severe airway obstruction. Initial seminal studies by Luciani A et al. established the link between defective CFTR and the presence of aggresome bodies, lung inflammation, and ROS-mediated autophagy inhibition [53]. We and others have not only validated that defective CFTR-mediated ROS-TG2 pathway drives the crosslinking of Beclin-1, which results in the accumulation of misfolded ΔF508-CFTR into p62+HDAC6+ aggresome bodies leading to autophagy dysfunction, but we have also demonstrated the key central role of autophagy in regulating CF pathogenesis and exacerbations [42,58,149,150]. These studies describe the specific role of defective autophagy in CF-related chronic infections and resulting inflammatory-oxidative stress. In addition, CF macrophages demonstrate impaired phagocytic activity and thus CF patients are more prone to bacterial infections, such as P. aeruginosa and Burkholderia cenocepacia (B. cenocepacia) [45,51,58,106,151,152,153]. A recent study investigated the precise mechanism of weak autophagic activity in CF macrophages. Using the technique of reduced representation bisulfite sequencing (RRBS) to determine the DNA methylation profile, the authors found that the promoter regions of Atg12 in CF macrophages are significantly more methylated as compared to the control WT cells, thereby elucidating a novel mechanism for reduced autophagy activity in CF immune cells [154].\nIn a separate study, an increased expression of the microRNA (Mir)c1/Mir17-92 cluster was identified as a potential negative regulator of autophagy in CF macrophages when compared to normal control cells [105]. Furthermore, the in vivo downregulation of Mir17 and Mir20a, partially restored autophagy gene expression and improved the clearance of B. cenocepacia [105]. These studies highlight the importance of autophagy as a key protective mechanism in CF exacerbation, and lung disease pathogenesis and progression.","divisions":[{"label":"title","span":{"begin":0,"end":41}},{"label":"p","span":{"begin":42,"end":1628}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T236","span":{"begin":83,"end":87},"obj":"Body_part"},{"id":"T237","span":{"begin":180,"end":185},"obj":"Body_part"},{"id":"T238","span":{"begin":374,"end":378},"obj":"Body_part"},{"id":"T239","span":{"begin":969,"end":980},"obj":"Body_part"},{"id":"T240","span":{"begin":1263,"end":1274},"obj":"Body_part"},{"id":"T241","span":{"begin":1367,"end":1370},"obj":"Body_part"},{"id":"T242","span":{"begin":1451,"end":1462},"obj":"Body_part"},{"id":"T243","span":{"begin":1527,"end":1532},"obj":"Body_part"},{"id":"T244","span":{"begin":1616,"end":1621},"obj":"Body_part"},{"id":"T245","span":{"begin":1783,"end":1794},"obj":"Body_part"},{"id":"T246","span":{"begin":1827,"end":1832},"obj":"Body_part"},{"id":"T247","span":{"begin":1930,"end":1934},"obj":"Body_part"},{"id":"T248","span":{"begin":2104,"end":2108},"obj":"Body_part"}],"attributes":[{"id":"A236","pred":"fma_id","subj":"T236","obj":"http://purl.org/sig/ont/fma/fma7195"},{"id":"A237","pred":"fma_id","subj":"T237","obj":"http://purl.org/sig/ont/fma/fma66938"},{"id":"A238","pred":"fma_id","subj":"T238","obj":"http://purl.org/sig/ont/fma/fma7195"},{"id":"A239","pred":"fma_id","subj":"T239","obj":"http://purl.org/sig/ont/fma/fma63261"},{"id":"A240","pred":"fma_id","subj":"T240","obj":"http://purl.org/sig/ont/fma/fma63261"},{"id":"A241","pred":"fma_id","subj":"T241","obj":"http://purl.org/sig/ont/fma/fma74412"},{"id":"A242","pred":"fma_id","subj":"T242","obj":"http://purl.org/sig/ont/fma/fma63261"},{"id":"A243","pred":"fma_id","subj":"T243","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A244","pred":"fma_id","subj":"T244","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A245","pred":"fma_id","subj":"T245","obj":"http://purl.org/sig/ont/fma/fma63261"},{"id":"A246","pred":"fma_id","subj":"T246","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A247","pred":"fma_id","subj":"T247","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A248","pred":"fma_id","subj":"T248","obj":"http://purl.org/sig/ont/fma/fma7195"},{"subj":"T236","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T237","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T238","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T239","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T240","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T241","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T242","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T243","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T244","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T245","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T246","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T247","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T248","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T63","span":{"begin":83,"end":87},"obj":"Body_part"},{"id":"T64","span":{"begin":180,"end":185},"obj":"Body_part"},{"id":"T65","span":{"begin":374,"end":378},"obj":"Body_part"},{"id":"T66","span":{"begin":2104,"end":2108},"obj":"Body_part"}],"attributes":[{"id":"A63","pred":"uberon_id","subj":"T63","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"A64","pred":"uberon_id","subj":"T64","obj":"http://purl.obolibrary.org/obo/UBERON_0000912"},{"id":"A65","pred":"uberon_id","subj":"T65","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"A66","pred":"uberon_id","subj":"T66","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"subj":"T63","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T64","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T65","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T66","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T297","span":{"begin":26,"end":41},"obj":"Disease"},{"id":"T298","span":{"begin":42,"end":57},"obj":"Disease"},{"id":"T299","span":{"begin":63,"end":95},"obj":"Disease"},{"id":"T300","span":{"begin":71,"end":95},"obj":"Disease"},{"id":"T301","span":{"begin":83,"end":95},"obj":"Disease"},{"id":"T302","span":{"begin":125,"end":135},"obj":"Disease"},{"id":"T303","span":{"begin":379,"end":391},"obj":"Disease"},{"id":"T304","span":{"begin":760,"end":762},"obj":"Disease"},{"id":"T305","span":{"begin":878,"end":880},"obj":"Disease"},{"id":"T306","span":{"begin":897,"end":907},"obj":"Disease"},{"id":"T307","span":{"begin":966,"end":968},"obj":"Disease"},{"id":"T308","span":{"begin":1031,"end":1033},"obj":"Disease"},{"id":"T309","span":{"begin":1061,"end":1081},"obj":"Disease"},{"id":"T310","span":{"begin":1260,"end":1262},"obj":"Disease"},{"id":"T311","span":{"begin":1448,"end":1450},"obj":"Disease"},{"id":"T312","span":{"begin":1606,"end":1608},"obj":"Disease"},{"id":"T313","span":{"begin":1780,"end":1782},"obj":"Disease"},{"id":"T314","span":{"begin":2083,"end":2085},"obj":"Disease"},{"id":"T315","span":{"begin":2104,"end":2116},"obj":"Disease"}],"attributes":[{"id":"A297","pred":"mondo_id","subj":"T297","obj":"http://purl.obolibrary.org/obo/MONDO_0009061"},{"id":"A298","pred":"mondo_id","subj":"T298","obj":"http://purl.obolibrary.org/obo/MONDO_0009061"},{"id":"A299","pred":"mondo_id","subj":"T299","obj":"http://purl.obolibrary.org/obo/MONDO_0005002"},{"id":"A300","pred":"mondo_id","subj":"T300","obj":"http://purl.obolibrary.org/obo/MONDO_0002267"},{"id":"A301","pred":"mondo_id","subj":"T301","obj":"http://purl.obolibrary.org/obo/MONDO_0005275"},{"id":"A302","pred":"mondo_id","subj":"T302","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A303","pred":"mondo_id","subj":"T303","obj":"http://purl.obolibrary.org/obo/MONDO_0021166"},{"id":"A304","pred":"mondo_id","subj":"T304","obj":"http://purl.obolibrary.org/obo/MONDO_0009061"},{"id":"A305","pred":"mondo_id","subj":"T305","obj":"http://purl.obolibrary.org/obo/MONDO_0009061"},{"id":"A306","pred":"mondo_id","subj":"T306","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A307","pred":"mondo_id","subj":"T307","obj":"http://purl.obolibrary.org/obo/MONDO_0009061"},{"id":"A308","pred":"mondo_id","subj":"T308","obj":"http://purl.obolibrary.org/obo/MONDO_0009061"},{"id":"A309","pred":"mondo_id","subj":"T309","obj":"http://purl.obolibrary.org/obo/MONDO_0005113"},{"id":"A310","pred":"mondo_id","subj":"T310","obj":"http://purl.obolibrary.org/obo/MONDO_0009061"},{"id":"A311","pred":"mondo_id","subj":"T311","obj":"http://purl.obolibrary.org/obo/MONDO_0009061"},{"id":"A312","pred":"mondo_id","subj":"T312","obj":"http://purl.obolibrary.org/obo/MONDO_0009061"},{"id":"A313","pred":"mondo_id","subj":"T313","obj":"http://purl.obolibrary.org/obo/MONDO_0009061"},{"id":"A314","pred":"mondo_id","subj":"T314","obj":"http://purl.obolibrary.org/obo/MONDO_0009061"},{"id":"A315","pred":"mondo_id","subj":"T315","obj":"http://purl.obolibrary.org/obo/MONDO_0005275"},{"subj":"T297","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T298","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T299","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T300","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T301","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T302","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T303","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T304","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T305","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T306","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T307","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T308","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T309","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T310","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T311","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T312","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T313","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T314","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T315","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T396","span":{"begin":61,"end":62},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T397","span":{"begin":83,"end":87},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T398","span":{"begin":83,"end":87},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T399","span":{"begin":228,"end":234},"obj":"http://purl.obolibrary.org/obo/UBERON_0001005"},{"id":"T400","span":{"begin":283,"end":284},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T401","span":{"begin":331,"end":335},"obj":"http://purl.obolibrary.org/obo/PR_000001044"},{"id":"T402","span":{"begin":374,"end":378},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T403","span":{"begin":374,"end":378},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T404","span":{"begin":490,"end":494},"obj":"http://purl.obolibrary.org/obo/PR_000001044"},{"id":"T405","span":{"begin":610,"end":614},"obj":"http://purl.obolibrary.org/obo/PR_000001044"},{"id":"T406","span":{"begin":1002,"end":1012},"obj":"http://purl.obolibrary.org/obo/CL_0000234"},{"id":"T407","span":{"begin":1013,"end":1021},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T408","span":{"begin":1135,"end":1136},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T409","span":{"begin":1179,"end":1180},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T410","span":{"begin":1248,"end":1256},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T411","span":{"begin":1527,"end":1532},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T412","span":{"begin":1554,"end":1555},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T413","span":{"begin":1594,"end":1602},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T414","span":{"begin":1616,"end":1621},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T415","span":{"begin":1632,"end":1633},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T416","span":{"begin":1695,"end":1697},"obj":"http://purl.obolibrary.org/obo/CLO_0051741"},{"id":"T417","span":{"begin":1733,"end":1734},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T418","span":{"begin":1827,"end":1832},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T419","span":{"begin":1930,"end":1934},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T420","span":{"begin":1976,"end":1977},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T421","span":{"begin":2053,"end":2054},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T422","span":{"begin":2104,"end":2108},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T423","span":{"begin":2104,"end":2108},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"}],"attributes":[{"subj":"T396","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T397","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T398","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T399","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T400","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T401","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T402","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T403","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T404","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T405","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T406","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T407","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T408","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T409","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T410","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T411","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T412","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T413","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T414","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T415","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T416","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T417","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T418","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T419","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T420","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T421","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T422","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T423","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T191","span":{"begin":397,"end":400},"obj":"Chemical"},{"id":"T192","span":{"begin":504,"end":507},"obj":"Chemical"},{"id":"T193","span":{"begin":1322,"end":1331},"obj":"Chemical"},{"id":"T194","span":{"begin":1367,"end":1370},"obj":"Chemical"},{"id":"T195","span":{"begin":1524,"end":1526},"obj":"Chemical"}],"attributes":[{"id":"A191","pred":"chebi_id","subj":"T191","obj":"http://purl.obolibrary.org/obo/CHEBI_26523"},{"id":"A192","pred":"chebi_id","subj":"T192","obj":"http://purl.obolibrary.org/obo/CHEBI_26523"},{"id":"A193","pred":"chebi_id","subj":"T193","obj":"http://purl.obolibrary.org/obo/CHEBI_17137"},{"id":"A194","pred":"chebi_id","subj":"T194","obj":"http://purl.obolibrary.org/obo/CHEBI_16991"},{"id":"A195","pred":"chebi_id","subj":"T195","obj":"http://purl.obolibrary.org/obo/CHEBI_141450"},{"subj":"T191","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T192","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T193","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T194","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T195","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"901","span":{"begin":26,"end":41},"obj":"Disease"},{"id":"923","span":{"begin":331,"end":335},"obj":"Gene"},{"id":"924","span":{"begin":490,"end":494},"obj":"Gene"},{"id":"925","span":{"begin":547,"end":555},"obj":"Gene"},{"id":"926","span":{"begin":610,"end":614},"obj":"Gene"},{"id":"927","span":{"begin":620,"end":623},"obj":"Gene"},{"id":"928","span":{"begin":624,"end":629},"obj":"Gene"},{"id":"929","span":{"begin":1439,"end":1444},"obj":"Gene"},{"id":"930","span":{"begin":508,"end":511},"obj":"Gene"},{"id":"931","span":{"begin":1034,"end":1042},"obj":"Species"},{"id":"932","span":{"begin":1091,"end":1104},"obj":"Species"},{"id":"933","span":{"begin":1109,"end":1133},"obj":"Species"},{"id":"934","span":{"begin":1135,"end":1149},"obj":"Species"},{"id":"935","span":{"begin":397,"end":400},"obj":"Chemical"},{"id":"936","span":{"begin":504,"end":507},"obj":"Chemical"},{"id":"937","span":{"begin":42,"end":57},"obj":"Disease"},{"id":"938","span":{"begin":63,"end":95},"obj":"Disease"},{"id":"939","span":{"begin":125,"end":135},"obj":"Disease"},{"id":"940","span":{"begin":228,"end":246},"obj":"Disease"},{"id":"941","span":{"begin":374,"end":391},"obj":"Disease"},{"id":"942","span":{"begin":897,"end":907},"obj":"Disease"},{"id":"943","span":{"begin":1061,"end":1081},"obj":"Disease"},{"id":"948","span":{"begin":1691,"end":1694},"obj":"Gene"},{"id":"949","span":{"begin":1698,"end":1706},"obj":"Gene"},{"id":"950","span":{"begin":1976,"end":1990},"obj":"Species"},{"id":"951","span":{"begin":2104,"end":2116},"obj":"Disease"}],"attributes":[{"id":"A901","pred":"tao:has_database_id","subj":"901","obj":"MESH:D003550"},{"id":"A923","pred":"tao:has_database_id","subj":"923","obj":"Gene:1080"},{"id":"A924","pred":"tao:has_database_id","subj":"924","obj":"Gene:1080"},{"id":"A925","pred":"tao:has_database_id","subj":"925","obj":"Gene:8678"},{"id":"A926","pred":"tao:has_database_id","subj":"926","obj":"Gene:1080"},{"id":"A927","pred":"tao:has_database_id","subj":"927","obj":"Gene:51164"},{"id":"A928","pred":"tao:has_database_id","subj":"928","obj":"Gene:10013"},{"id":"A929","pred":"tao:has_database_id","subj":"929","obj":"Gene:9140"},{"id":"A930","pred":"tao:has_database_id","subj":"930","obj":"Gene:21817"},{"id":"A931","pred":"tao:has_database_id","subj":"931","obj":"Tax:9606"},{"id":"A932","pred":"tao:has_database_id","subj":"932","obj":"Tax:287"},{"id":"A933","pred":"tao:has_database_id","subj":"933","obj":"Tax:95486"},{"id":"A934","pred":"tao:has_database_id","subj":"934","obj":"Tax:95486"},{"id":"A935","pred":"tao:has_database_id","subj":"935","obj":"MESH:D017382"},{"id":"A936","pred":"tao:has_database_id","subj":"936","obj":"MESH:D017382"},{"id":"A937","pred":"tao:has_database_id","subj":"937","obj":"MESH:D003550"},{"id":"A938","pred":"tao:has_database_id","subj":"938","obj":"MESH:D029424"},{"id":"A939","pred":"tao:has_database_id","subj":"939","obj":"MESH:D007239"},{"id":"A940","pred":"tao:has_database_id","subj":"940","obj":"MESH:D000402"},{"id":"A941","pred":"tao:has_database_id","subj":"941","obj":"MESH:D011014"},{"id":"A942","pred":"tao:has_database_id","subj":"942","obj":"MESH:D007239"},{"id":"A943","pred":"tao:has_database_id","subj":"943","obj":"MESH:D001424"},{"id":"A948","pred":"tao:has_database_id","subj":"948","obj":"Gene:220972"},{"id":"A949","pred":"tao:has_database_id","subj":"949","obj":"Gene:407975"},{"id":"A950","pred":"tao:has_database_id","subj":"950","obj":"Tax:95486"},{"id":"A951","pred":"tao:has_database_id","subj":"951","obj":"MESH:D008171"},{"subj":"901","pred":"source","obj":"LitCovid-PubTator"},{"subj":"923","pred":"source","obj":"LitCovid-PubTator"},{"subj":"924","pred":"source","obj":"LitCovid-PubTator"},{"subj":"925","pred":"source","obj":"LitCovid-PubTator"},{"subj":"926","pred":"source","obj":"LitCovid-PubTator"},{"subj":"927","pred":"source","obj":"LitCovid-PubTator"},{"subj":"928","pred":"source","obj":"LitCovid-PubTator"},{"subj":"929","pred":"source","obj":"LitCovid-PubTator"},{"subj":"930","pred":"source","obj":"LitCovid-PubTator"},{"subj":"931","pred":"source","obj":"LitCovid-PubTator"},{"subj":"932","pred":"source","obj":"LitCovid-PubTator"},{"subj":"933","pred":"source","obj":"LitCovid-PubTator"},{"subj":"934","pred":"source","obj":"LitCovid-PubTator"},{"subj":"935","pred":"source","obj":"LitCovid-PubTator"},{"subj":"936","pred":"source","obj":"LitCovid-PubTator"},{"subj":"937","pred":"source","obj":"LitCovid-PubTator"},{"subj":"938","pred":"source","obj":"LitCovid-PubTator"},{"subj":"939","pred":"source","obj":"LitCovid-PubTator"},{"subj":"940","pred":"source","obj":"LitCovid-PubTator"},{"subj":"941","pred":"source","obj":"LitCovid-PubTator"},{"subj":"942","pred":"source","obj":"LitCovid-PubTator"},{"subj":"943","pred":"source","obj":"LitCovid-PubTator"},{"subj":"948","pred":"source","obj":"LitCovid-PubTator"},{"subj":"949","pred":"source","obj":"LitCovid-PubTator"},{"subj":"950","pred":"source","obj":"LitCovid-PubTator"},{"subj":"951","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T132","span":{"begin":71,"end":95},"obj":"Phenotype"},{"id":"T133","span":{"begin":115,"end":135},"obj":"Phenotype"},{"id":"T134","span":{"begin":158,"end":174},"obj":"Phenotype"},{"id":"T135","span":{"begin":889,"end":907},"obj":"Phenotype"},{"id":"T136","span":{"begin":935,"end":951},"obj":"Phenotype"},{"id":"T137","span":{"begin":1052,"end":1081},"obj":"Phenotype"},{"id":"T138","span":{"begin":2104,"end":2116},"obj":"Phenotype"}],"attributes":[{"id":"A132","pred":"hp_id","subj":"T132","obj":"http://purl.obolibrary.org/obo/HP_0006536"},{"id":"A133","pred":"hp_id","subj":"T133","obj":"http://purl.obolibrary.org/obo/HP_0002719"},{"id":"A134","pred":"hp_id","subj":"T134","obj":"http://purl.obolibrary.org/obo/HP_0025464"},{"id":"A135","pred":"hp_id","subj":"T135","obj":"http://purl.obolibrary.org/obo/HP_0031035"},{"id":"A136","pred":"hp_id","subj":"T136","obj":"http://purl.obolibrary.org/obo/HP_0025464"},{"id":"A137","pred":"hp_id","subj":"T137","obj":"http://purl.obolibrary.org/obo/HP_0002718"},{"id":"A138","pred":"hp_id","subj":"T138","obj":"http://purl.obolibrary.org/obo/HP_0002088"},{"subj":"T132","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T133","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T134","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T135","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T136","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T137","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T138","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T483","span":{"begin":5,"end":14},"obj":"http://purl.obolibrary.org/obo/GO_0016236"},{"id":"T484","span":{"begin":5,"end":14},"obj":"http://purl.obolibrary.org/obo/GO_0006914"},{"id":"T485","span":{"begin":331,"end":335},"obj":"http://purl.obolibrary.org/obo/GO_0005260"},{"id":"T486","span":{"begin":379,"end":391},"obj":"http://purl.obolibrary.org/obo/GO_0006954"},{"id":"T487","span":{"begin":410,"end":419},"obj":"http://purl.obolibrary.org/obo/GO_0016236"},{"id":"T488","span":{"begin":410,"end":419},"obj":"http://purl.obolibrary.org/obo/GO_0006914"},{"id":"T489","span":{"begin":490,"end":494},"obj":"http://purl.obolibrary.org/obo/GO_0005260"},{"id":"T490","span":{"begin":610,"end":614},"obj":"http://purl.obolibrary.org/obo/GO_0005260"},{"id":"T491","span":{"begin":659,"end":668},"obj":"http://purl.obolibrary.org/obo/GO_0016236"},{"id":"T492","span":{"begin":659,"end":668},"obj":"http://purl.obolibrary.org/obo/GO_0006914"},{"id":"T493","span":{"begin":736,"end":745},"obj":"http://purl.obolibrary.org/obo/GO_0016236"},{"id":"T494","span":{"begin":736,"end":745},"obj":"http://purl.obolibrary.org/obo/GO_0006914"},{"id":"T495","span":{"begin":763,"end":775},"obj":"http://purl.obolibrary.org/obo/GO_0009405"},{"id":"T496","span":{"begin":865,"end":874},"obj":"http://purl.obolibrary.org/obo/GO_0016236"},{"id":"T497","span":{"begin":865,"end":874},"obj":"http://purl.obolibrary.org/obo/GO_0006914"},{"id":"T498","span":{"begin":1367,"end":1382},"obj":"http://purl.obolibrary.org/obo/GO_0006306"},{"id":"T499","span":{"begin":1371,"end":1382},"obj":"http://purl.obolibrary.org/obo/GO_0032259"},{"id":"T500","span":{"begin":1584,"end":1593},"obj":"http://purl.obolibrary.org/obo/GO_0016236"},{"id":"T501","span":{"begin":1584,"end":1593},"obj":"http://purl.obolibrary.org/obo/GO_0006914"},{"id":"T502","span":{"begin":1745,"end":1776},"obj":"http://purl.obolibrary.org/obo/GO_0010507"},{"id":"T503","span":{"begin":1767,"end":1776},"obj":"http://purl.obolibrary.org/obo/GO_0016236"},{"id":"T504","span":{"begin":1767,"end":1776},"obj":"http://purl.obolibrary.org/obo/GO_0006914"},{"id":"T505","span":{"begin":1920,"end":1929},"obj":"http://purl.obolibrary.org/obo/GO_0016236"},{"id":"T506","span":{"begin":1920,"end":1929},"obj":"http://purl.obolibrary.org/obo/GO_0006914"},{"id":"T507","span":{"begin":1930,"end":1945},"obj":"http://purl.obolibrary.org/obo/GO_0010467"},{"id":"T508","span":{"begin":2040,"end":2049},"obj":"http://purl.obolibrary.org/obo/GO_0016236"},{"id":"T509","span":{"begin":2040,"end":2049},"obj":"http://purl.obolibrary.org/obo/GO_0006914"},{"id":"T510","span":{"begin":2117,"end":2129},"obj":"http://purl.obolibrary.org/obo/GO_0009405"}],"attributes":[{"subj":"T483","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T484","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T485","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T486","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T487","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T488","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T489","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T490","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T491","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T492","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T493","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T494","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T495","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T496","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T497","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T498","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T499","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T500","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T501","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T502","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T503","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T504","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T505","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T506","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T507","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T508","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T509","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T510","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T189","span":{"begin":0,"end":4},"obj":"Sentence"},{"id":"T190","span":{"begin":5,"end":41},"obj":"Sentence"},{"id":"T191","span":{"begin":42,"end":247},"obj":"Sentence"},{"id":"T192","span":{"begin":248,"end":436},"obj":"Sentence"},{"id":"T193","span":{"begin":437,"end":810},"obj":"Sentence"},{"id":"T194","span":{"begin":811,"end":952},"obj":"Sentence"},{"id":"T195","span":{"begin":953,"end":1178},"obj":"Sentence"},{"id":"T196","span":{"begin":1179,"end":1275},"obj":"Sentence"},{"id":"T197","span":{"begin":1276,"end":1628},"obj":"Sentence"},{"id":"T198","span":{"begin":1629,"end":1839},"obj":"Sentence"},{"id":"T199","span":{"begin":1840,"end":1997},"obj":"Sentence"},{"id":"T200","span":{"begin":1998,"end":2146},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T189","pred":"source","obj":"LitCovid-sentences"},{"subj":"T190","pred":"source","obj":"LitCovid-sentences"},{"subj":"T191","pred":"source","obj":"LitCovid-sentences"},{"subj":"T192","pred":"source","obj":"LitCovid-sentences"},{"subj":"T193","pred":"source","obj":"LitCovid-sentences"},{"subj":"T194","pred":"source","obj":"LitCovid-sentences"},{"subj":"T195","pred":"source","obj":"LitCovid-sentences"},{"subj":"T196","pred":"source","obj":"LitCovid-sentences"},{"subj":"T197","pred":"source","obj":"LitCovid-sentences"},{"subj":"T198","pred":"source","obj":"LitCovid-sentences"},{"subj":"T199","pred":"source","obj":"LitCovid-sentences"},{"subj":"T200","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#93ecb2","default":true},{"id":"LitCovid-PD-UBERON","color":"#ec9893"},{"id":"LitCovid-PD-MONDO","color":"#93a7ec"},{"id":"LitCovid-PD-CLO","color":"#c1ec93"},{"id":"LitCovid-PD-CHEBI","color":"#ec93dc"},{"id":"LitCovid-PubTator","color":"#93ece2"},{"id":"LitCovid-PD-HP","color":"#ecc893"},{"id":"LitCovid-PD-GO-BP","color":"#ae93ec"},{"id":"LitCovid-sentences","color":"#93ec94"}]}]}}