PMC:7565482 / 30574-31943 JSONTXT

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T79","span":{"begin":313,"end":321},"obj":"Disease"}],"attributes":[{"id":"A79","pred":"mondo_id","subj":"T79","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"Table 3 Conserved sequences among different coronavirus. I: Pan-coronavirus, II: Betacoronavirus, III: Human coronavirus alignment. The black squares that indicted which alignments contained the conserved sequences.\nConsensus Sequence ORF Consensus Start Position Alignment Hit Epitopes\nI II III Unknown SARS-CoV Human Other Coronavirus\nVGVLTLDNQDLNG ORF1b 193 1 4 - -\nTQMNLKYAISAKNRARTVAGVSI ORF1b 530 - 5 2 -\nVIGTSKFYGGW ORF1b 580 - 3 - -\nLMGWDYPKCDRAMPN ORF1b 605 1 3 - -\nLANECAQVL ORF1b 646 - 1 - -\nYVKPGGTSSGDATTA ORF1b 665 - 3 - -\nKHFSMMILSDDAVVCFN ORF1b 743 - 2 1 -\nLYYQNNVFMS ORF1b 778 - - - -\nGPHEFCSQHT ORF1b 800 - 2 - -\nLPYPDPSRIL ORF1b 820 - 2 3 -\nERFVSLAIDAYPL ORF1b 849 - 5 - 1\nSQTSLRCG ORF1b 934 - 1 - -\nLYLGGMSYY ORF1b 986 - 3 - -\nLKLFAAET ORF1b 1054 - 4 - -\nQGPPGTGKSH ORF1b 1205 1 2 40 -\nTACSHAAVDALCEKA ORF1b 1231 - 1 - -\nGDPAQLPAPR ORF1b 1324 - 3 - -\nAVFISPYNSQN ORF1b 1432 - 4 1 -\nNRFNVAITRA ORF1b 1483 - 2 - -\nCNLGGAVC ORF1b 2002 - 1 - -\nKYTQLCQYLN ORF1b 2443 - 3 - -\nRSFIEDLLF Spike 815 - 2 - -\nQIDRLITGRL Spike 993 - 5 - 1\nKWPWYIWL Spike 1211 - - - -\nWSFNPETN M 110 - 3 - -\nPRWYFYYLGTGP N 106 - 7 - -"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T266","span":{"begin":61,"end":64},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9596"},{"id":"T267","span":{"begin":104,"end":109},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T268","span":{"begin":323,"end":328},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T269","span":{"begin":432,"end":436},"obj":"http://purl.obolibrary.org/obo/CLO_0001407"},{"id":"T270","span":{"begin":1067,"end":1071},"obj":"http://purl.obolibrary.org/obo/CLO_0053794"}],"text":"Table 3 Conserved sequences among different coronavirus. I: Pan-coronavirus, II: Betacoronavirus, III: Human coronavirus alignment. The black squares that indicted which alignments contained the conserved sequences.\nConsensus Sequence ORF Consensus Start Position Alignment Hit Epitopes\nI II III Unknown SARS-CoV Human Other Coronavirus\nVGVLTLDNQDLNG ORF1b 193 1 4 - -\nTQMNLKYAISAKNRARTVAGVSI ORF1b 530 - 5 2 -\nVIGTSKFYGGW ORF1b 580 - 3 - -\nLMGWDYPKCDRAMPN ORF1b 605 1 3 - -\nLANECAQVL ORF1b 646 - 1 - -\nYVKPGGTSSGDATTA ORF1b 665 - 3 - -\nKHFSMMILSDDAVVCFN ORF1b 743 - 2 1 -\nLYYQNNVFMS ORF1b 778 - - - -\nGPHEFCSQHT ORF1b 800 - 2 - -\nLPYPDPSRIL ORF1b 820 - 2 3 -\nERFVSLAIDAYPL ORF1b 849 - 5 - 1\nSQTSLRCG ORF1b 934 - 1 - -\nLYLGGMSYY ORF1b 986 - 3 - -\nLKLFAAET ORF1b 1054 - 4 - -\nQGPPGTGKSH ORF1b 1205 1 2 40 -\nTACSHAAVDALCEKA ORF1b 1231 - 1 - -\nGDPAQLPAPR ORF1b 1324 - 3 - -\nAVFISPYNSQN ORF1b 1432 - 4 1 -\nNRFNVAITRA ORF1b 1483 - 2 - -\nCNLGGAVC ORF1b 2002 - 1 - -\nKYTQLCQYLN ORF1b 2443 - 3 - -\nRSFIEDLLF Spike 815 - 2 - -\nQIDRLITGRL Spike 993 - 5 - 1\nKWPWYIWL Spike 1211 - - - -\nWSFNPETN M 110 - 3 - -\nPRWYFYYLGTGP N 106 - 7 - -"}

{"project":"LitCovid-PubTator","denotations":[{"id":"607","span":{"begin":313,"end":321},"obj":"Species"},{"id":"608","span":{"begin":323,"end":328},"obj":"Species"},{"id":"609","span":{"begin":336,"end":347},"obj":"Species"},{"id":"614","span":{"begin":45,"end":56},"obj":"Species"},{"id":"615","span":{"begin":65,"end":76},"obj":"Species"},{"id":"616","span":{"begin":82,"end":97},"obj":"Species"},{"id":"617","span":{"begin":104,"end":121},"obj":"Species"}],"attributes":[{"id":"A607","pred":"tao:has_database_id","subj":"607","obj":"Tax:694009"},{"id":"A608","pred":"tao:has_database_id","subj":"608","obj":"Tax:9606"},{"id":"A609","pred":"tao:has_database_id","subj":"609","obj":"Tax:11118"},{"id":"A614","pred":"tao:has_database_id","subj":"614","obj":"Tax:11118"},{"id":"A615","pred":"tao:has_database_id","subj":"615","obj":"Tax:11118"},{"id":"A616","pred":"tao:has_database_id","subj":"616","obj":"Tax:694002"},{"id":"A617","pred":"tao:has_database_id","subj":"617","obj":"Tax:694448"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Table 3 Conserved sequences among different coronavirus. I: Pan-coronavirus, II: Betacoronavirus, III: Human coronavirus alignment. The black squares that indicted which alignments contained the conserved sequences.\nConsensus Sequence ORF Consensus Start Position Alignment Hit Epitopes\nI II III Unknown SARS-CoV Human Other Coronavirus\nVGVLTLDNQDLNG ORF1b 193 1 4 - -\nTQMNLKYAISAKNRARTVAGVSI ORF1b 530 - 5 2 -\nVIGTSKFYGGW ORF1b 580 - 3 - -\nLMGWDYPKCDRAMPN ORF1b 605 1 3 - -\nLANECAQVL ORF1b 646 - 1 - -\nYVKPGGTSSGDATTA ORF1b 665 - 3 - -\nKHFSMMILSDDAVVCFN ORF1b 743 - 2 1 -\nLYYQNNVFMS ORF1b 778 - - - -\nGPHEFCSQHT ORF1b 800 - 2 - -\nLPYPDPSRIL ORF1b 820 - 2 3 -\nERFVSLAIDAYPL ORF1b 849 - 5 - 1\nSQTSLRCG ORF1b 934 - 1 - -\nLYLGGMSYY ORF1b 986 - 3 - -\nLKLFAAET ORF1b 1054 - 4 - -\nQGPPGTGKSH ORF1b 1205 1 2 40 -\nTACSHAAVDALCEKA ORF1b 1231 - 1 - -\nGDPAQLPAPR ORF1b 1324 - 3 - -\nAVFISPYNSQN ORF1b 1432 - 4 1 -\nNRFNVAITRA ORF1b 1483 - 2 - -\nCNLGGAVC ORF1b 2002 - 1 - -\nKYTQLCQYLN ORF1b 2443 - 3 - -\nRSFIEDLLF Spike 815 - 2 - -\nQIDRLITGRL Spike 993 - 5 - 1\nKWPWYIWL Spike 1211 - - - -\nWSFNPETN M 110 - 3 - -\nPRWYFYYLGTGP N 106 - 7 - -"}

{"project":"LitCovid-sentences","denotations":[{"id":"T246","span":{"begin":0,"end":57},"obj":"Sentence"},{"id":"T247","span":{"begin":58,"end":60},"obj":"Sentence"},{"id":"T248","span":{"begin":61,"end":81},"obj":"Sentence"},{"id":"T249","span":{"begin":82,"end":103},"obj":"Sentence"},{"id":"T250","span":{"begin":104,"end":132},"obj":"Sentence"},{"id":"T251","span":{"begin":133,"end":216},"obj":"Sentence"},{"id":"T252","span":{"begin":217,"end":291},"obj":"Sentence"},{"id":"T253","span":{"begin":292,"end":347},"obj":"Sentence"},{"id":"T254","span":{"begin":348,"end":388},"obj":"Sentence"},{"id":"T255","span":{"begin":389,"end":439},"obj":"Sentence"},{"id":"T256","span":{"begin":440,"end":478},"obj":"Sentence"},{"id":"T257","span":{"begin":479,"end":521},"obj":"Sentence"},{"id":"T258","span":{"begin":522,"end":558},"obj":"Sentence"},{"id":"T259","span":{"begin":559,"end":601},"obj":"Sentence"},{"id":"T260","span":{"begin":602,"end":646},"obj":"Sentence"},{"id":"T261","span":{"begin":647,"end":684},"obj":"Sentence"},{"id":"T262","span":{"begin":685,"end":722},"obj":"Sentence"},{"id":"T263","span":{"begin":723,"end":760},"obj":"Sentence"},{"id":"T264","span":{"begin":761,"end":801},"obj":"Sentence"},{"id":"T265","span":{"begin":802,"end":837},"obj":"Sentence"},{"id":"T266","span":{"begin":838,"end":874},"obj":"Sentence"},{"id":"T267","span":{"begin":875,"end":911},"obj":"Sentence"},{"id":"T268","span":{"begin":912,"end":951},"obj":"Sentence"},{"id":"T269","span":{"begin":952,"end":995},"obj":"Sentence"},{"id":"T270","span":{"begin":996,"end":1034},"obj":"Sentence"},{"id":"T271","span":{"begin":1035,"end":1074},"obj":"Sentence"},{"id":"T272","span":{"begin":1075,"end":1113},"obj":"Sentence"},{"id":"T273","span":{"begin":1114,"end":1150},"obj":"Sentence"},{"id":"T274","span":{"begin":1151,"end":1189},"obj":"Sentence"},{"id":"T275","span":{"begin":1190,"end":1226},"obj":"Sentence"},{"id":"T276","span":{"begin":1227,"end":1264},"obj":"Sentence"},{"id":"T277","span":{"begin":1265,"end":1301},"obj":"Sentence"},{"id":"T278","span":{"begin":1302,"end":1333},"obj":"Sentence"},{"id":"T279","span":{"begin":1334,"end":1369},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Table 3 Conserved sequences among different coronavirus. I: Pan-coronavirus, II: Betacoronavirus, III: Human coronavirus alignment. The black squares that indicted which alignments contained the conserved sequences.\nConsensus Sequence ORF Consensus Start Position Alignment Hit Epitopes\nI II III Unknown SARS-CoV Human Other Coronavirus\nVGVLTLDNQDLNG ORF1b 193 1 4 - -\nTQMNLKYAISAKNRARTVAGVSI ORF1b 530 - 5 2 -\nVIGTSKFYGGW ORF1b 580 - 3 - -\nLMGWDYPKCDRAMPN ORF1b 605 1 3 - -\nLANECAQVL ORF1b 646 - 1 - -\nYVKPGGTSSGDATTA ORF1b 665 - 3 - -\nKHFSMMILSDDAVVCFN ORF1b 743 - 2 1 -\nLYYQNNVFMS ORF1b 778 - - - -\nGPHEFCSQHT ORF1b 800 - 2 - -\nLPYPDPSRIL ORF1b 820 - 2 3 -\nERFVSLAIDAYPL ORF1b 849 - 5 - 1\nSQTSLRCG ORF1b 934 - 1 - -\nLYLGGMSYY ORF1b 986 - 3 - -\nLKLFAAET ORF1b 1054 - 4 - -\nQGPPGTGKSH ORF1b 1205 1 2 40 -\nTACSHAAVDALCEKA ORF1b 1231 - 1 - -\nGDPAQLPAPR ORF1b 1324 - 3 - -\nAVFISPYNSQN ORF1b 1432 - 4 1 -\nNRFNVAITRA ORF1b 1483 - 2 - -\nCNLGGAVC ORF1b 2002 - 1 - -\nKYTQLCQYLN ORF1b 2443 - 3 - -\nRSFIEDLLF Spike 815 - 2 - -\nQIDRLITGRL Spike 993 - 5 - 1\nKWPWYIWL Spike 1211 - - - -\nWSFNPETN M 110 - 3 - -\nPRWYFYYLGTGP N 106 - 7 - -"}