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PMC:7565482 / 28984-30347 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T124 0-4 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T125 18-25 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T126 188-195 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T127 302-305 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T128 316-319 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T129 437-449 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T130 544-551 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T131 696-703 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T132 791-803 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T133 891-898 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T134 940-947 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T135 989-996 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T136 1087-1094 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T137 1342-1349 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T253 0-4 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T254 120-123 http://purl.obolibrary.org/obo/CLO_0001003 denotes 163
T255 451-453 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T256 465-467 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T257 465-467 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T258 782-790 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
574 52-57 Gene denotes ORF1a Gene:43740578
575 103-108 Gene denotes ORF1a Gene:43740578
576 207-216 Gene denotes nsp2 nsp3 Gene:43740578
577 241-245 Gene denotes nsp6 Gene:43740578
578 246-249 Gene denotes nsp Gene:43740578
579 251-254 Gene denotes nsp Gene:43740578
580 256-260 Gene denotes nsp9 Gene:43740578
581 261-266 Gene denotes nsp10 Gene:43740578
582 267-272 Gene denotes nsp11 Gene:43740578
583 273-350 Gene denotes ORF1ab 13468 21555 pp1ab RNA-dependent RNA polymerase Canonical helicase Gene:55354
584 517-522 Gene denotes ORF3a Gene:43740569
585 538-543 Gene denotes ORF3a Gene:43740569
586 566-571 Gene denotes ORF3a Gene:43740569
587 618-623 Gene denotes ORF3a Gene:43740569
588 866-870 Gene denotes ORF6 Gene:43740572
589 886-890 Gene denotes ORF6 Gene:43740572
590 1011-1016 Gene denotes ORF7b Gene:43740574
591 1264-1269 Gene denotes ORF10 Gene:43740576
592 1109-1113 Gene denotes ORF8 Gene:43740577
593 1082-1086 Gene denotes ORF8 Gene:43740577
594 1062-1066 Gene denotes ORF8 Gene:43740577
595 1336-1341 Gene denotes ORF10 Gene:43740576
596 1315-1320 Gene denotes ORF10 Gene:43740576
597 934-939 Gene denotes ORF7a Gene:43740573
598 913-918 Gene denotes ORF7a Gene:43740573
599 765-766 Gene denotes M Gene:43740571

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T27 230-240 http://purl.obolibrary.org/obo/GO_0004175 denotes proteinase

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T201 0-51 Sentence denotes Gene Start End Protein Protease Products Frame
T202 52-102 Sentence denotes ORF1a.iORF1.ext 59 136 upORF1a1 - Alternative
T203 103-154 Sentence denotes ORF1a.iORF2.ext 163 264 upORF1a2 - Alternative
T204 155-206 Sentence denotes ORF1ab 266 13483 pp1a leader protein Canonical
T205 207-211 Sentence denotes nsp2
T206 212-216 Sentence denotes nsp3
T207 217-221 Sentence denotes nsp4
T208 222-240 Sentence denotes 3C-like proteinase
T209 241-245 Sentence denotes nsp6
T210 246-250 Sentence denotes nsp7
T211 251-255 Sentence denotes nsp8
T212 256-260 Sentence denotes nsp9
T213 261-266 Sentence denotes nsp10
T214 267-272 Sentence denotes nsp11
T215 273-341 Sentence denotes ORF1ab 13468 21555 pp1ab RNA-dependent RNA polymerase Canonical
T216 342-350 Sentence denotes helicase
T217 351-371 Sentence denotes 3′-to-5′ exonuclease
T218 372-381 Sentence denotes endoRNAse
T219 382-411 Sentence denotes 2′-O-ribose methyltransferase
T220 412-464 Sentence denotes S 21563 25384 surface glycoprotein S1 Canonical
T221 465-467 Sentence denotes S2
T222 468-516 Sentence denotes ORFS.iORF1 21744 21863 inORFS - Alternative
T223 517-565 Sentence denotes ORF3a 25393 26220 ORF3a protein - Canonical
T224 566-617 Sentence denotes ORF3a.iORF1 25457 25582 inORF3a1 - Alternative
T225 618-669 Sentence denotes ORF3a.iORF2 25596 25697 inORF3a2 - Alternative
T226 670-717 Sentence denotes E 26245 26472 envelope protein - Canonical
T227 718-764 Sentence denotes ORFM.ext 26484 27191 exORFM - Alternative
T228 765-817 Sentence denotes M 26523 27191 membrane glycoprotein - Canonical
T229 818-865 Sentence denotes ORFM.iORF 27151 27195 inORFM - Alternative
T230 866-912 Sentence denotes ORF6 27202 27387 ORF6 protein - Canonical
T231 913-961 Sentence denotes ORF7a 27394 27759 ORF7a protein - Canonical
T232 962-1010 Sentence denotes ORF7b 27756 27887 ORF7b protein - Canonical
T233 1011-1061 Sentence denotes ORF7b.iORF2 27862 27897 inORF7b - Alternative
T234 1062-1108 Sentence denotes ORF8 27894 28259 ORF8 protein - Canonical
T235 1109-1156 Sentence denotes ORF8.iORF 27965 27994 inORF8 - Alternative
T236 1157-1215 Sentence denotes N 28274 29533 nucleocapsid phosphoprotein - Canonical
T237 1216-1263 Sentence denotes ORFN.iORF1 28284 28577 ORF9b - Alternative
T238 1264-1314 Sentence denotes ORF10.upORF 29538 29570 upORF10 - Alternative
T239 1315-1363 Sentence denotes ORF10 29558 29674 ORF10 protein - Canonical