> top > docs > PMC:7565482 > spans > 28845-30411 > annotations

PMC:7565482 / 28845-30411 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T124 139-143 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T125 157-164 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T126 327-334 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T127 441-444 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T128 455-458 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T129 576-588 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T130 683-690 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T131 835-842 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T132 930-942 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T133 1030-1037 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T134 1079-1086 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T135 1128-1135 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T136 1226-1233 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T137 1481-1488 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T78 64-72 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T253 139-143 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T254 259-262 http://purl.obolibrary.org/obo/CLO_0001003 denotes 163
T255 590-592 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T256 604-606 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T257 604-606 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T258 921-929 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
574 191-196 Gene denotes ORF1a Gene:43740578
575 242-247 Gene denotes ORF1a Gene:43740578
576 346-355 Gene denotes nsp2 nsp3 Gene:43740578
577 380-384 Gene denotes nsp6 Gene:43740578
578 385-388 Gene denotes nsp Gene:43740578
579 390-393 Gene denotes nsp Gene:43740578
580 395-399 Gene denotes nsp9 Gene:43740578
581 400-405 Gene denotes nsp10 Gene:43740578
582 406-411 Gene denotes nsp11 Gene:43740578
583 412-489 Gene denotes ORF1ab 13468 21555 pp1ab RNA-dependent RNA polymerase Canonical helicase Gene:55354
584 656-661 Gene denotes ORF3a Gene:43740569
585 677-682 Gene denotes ORF3a Gene:43740569
586 705-710 Gene denotes ORF3a Gene:43740569
587 757-762 Gene denotes ORF3a Gene:43740569
588 1005-1009 Gene denotes ORF6 Gene:43740572
589 1025-1029 Gene denotes ORF6 Gene:43740572
590 1150-1155 Gene denotes ORF7b Gene:43740574
591 1403-1408 Gene denotes ORF10 Gene:43740576
592 1248-1252 Gene denotes ORF8 Gene:43740577
593 1221-1225 Gene denotes ORF8 Gene:43740577
594 1201-1205 Gene denotes ORF8 Gene:43740577
595 1475-1480 Gene denotes ORF10 Gene:43740576
596 1454-1459 Gene denotes ORF10 Gene:43740576
597 1073-1078 Gene denotes ORF7a Gene:43740573
598 1052-1057 Gene denotes ORF7a Gene:43740573
599 904-905 Gene denotes M Gene:43740571
601 64-74 Species denotes SARS-CoV-2 Tax:2697049

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T27 369-379 http://purl.obolibrary.org/obo/GO_0004175 denotes proteinase

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T200 0-138 Sentence denotes Table 1 Canonical and alternative open reading frames (ORF) in SARS-CoV-2. iORF: internal OPF, extORF: extended ORF, upORF: upstream ORF.
T201 139-190 Sentence denotes Gene Start End Protein Protease Products Frame
T202 191-241 Sentence denotes ORF1a.iORF1.ext 59 136 upORF1a1 - Alternative
T203 242-293 Sentence denotes ORF1a.iORF2.ext 163 264 upORF1a2 - Alternative
T204 294-345 Sentence denotes ORF1ab 266 13483 pp1a leader protein Canonical
T205 346-350 Sentence denotes nsp2
T206 351-355 Sentence denotes nsp3
T207 356-360 Sentence denotes nsp4
T208 361-379 Sentence denotes 3C-like proteinase
T209 380-384 Sentence denotes nsp6
T210 385-389 Sentence denotes nsp7
T211 390-394 Sentence denotes nsp8
T212 395-399 Sentence denotes nsp9
T213 400-405 Sentence denotes nsp10
T214 406-411 Sentence denotes nsp11
T215 412-480 Sentence denotes ORF1ab 13468 21555 pp1ab RNA-dependent RNA polymerase Canonical
T216 481-489 Sentence denotes helicase
T217 490-510 Sentence denotes 3′-to-5′ exonuclease
T218 511-520 Sentence denotes endoRNAse
T219 521-550 Sentence denotes 2′-O-ribose methyltransferase
T220 551-603 Sentence denotes S 21563 25384 surface glycoprotein S1 Canonical
T221 604-606 Sentence denotes S2
T222 607-655 Sentence denotes ORFS.iORF1 21744 21863 inORFS - Alternative
T223 656-704 Sentence denotes ORF3a 25393 26220 ORF3a protein - Canonical
T224 705-756 Sentence denotes ORF3a.iORF1 25457 25582 inORF3a1 - Alternative
T225 757-808 Sentence denotes ORF3a.iORF2 25596 25697 inORF3a2 - Alternative
T226 809-856 Sentence denotes E 26245 26472 envelope protein - Canonical
T227 857-903 Sentence denotes ORFM.ext 26484 27191 exORFM - Alternative
T228 904-956 Sentence denotes M 26523 27191 membrane glycoprotein - Canonical
T229 957-1004 Sentence denotes ORFM.iORF 27151 27195 inORFM - Alternative
T230 1005-1051 Sentence denotes ORF6 27202 27387 ORF6 protein - Canonical
T231 1052-1100 Sentence denotes ORF7a 27394 27759 ORF7a protein - Canonical
T232 1101-1149 Sentence denotes ORF7b 27756 27887 ORF7b protein - Canonical
T233 1150-1200 Sentence denotes ORF7b.iORF2 27862 27897 inORF7b - Alternative
T234 1201-1247 Sentence denotes ORF8 27894 28259 ORF8 protein - Canonical
T235 1248-1295 Sentence denotes ORF8.iORF 27965 27994 inORF8 - Alternative
T236 1296-1354 Sentence denotes N 28274 29533 nucleocapsid phosphoprotein - Canonical
T237 1355-1402 Sentence denotes ORFN.iORF1 28284 28577 ORF9b - Alternative
T238 1403-1453 Sentence denotes ORF10.upORF 29538 29570 upORF10 - Alternative
T239 1454-1502 Sentence denotes ORF10 29558 29674 ORF10 protein - Canonical
T240 1503-1566 Sentence denotes ORF position is referred to the NC_045512.2 reference sequence.