PMC:7565482 / 25487-26972
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T114 | 420-424 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T115 | 560-568 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T116 | 729-733 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T117 | 838-842 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T118 | 1375-1380 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T119 | 1465-1469 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T69 | 141-149 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T67 | 26-34 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T68 | 74-82 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T70 | 316-324 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T71 | 327-336 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T72 | 437-445 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T73 | 474-482 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T74 | 485-494 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T75 | 747-755 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T235 | 418-424 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cell |
| T236 | 548-549 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T237 | 727-733 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cell |
| T238 | 821-826 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T239 | 836-842 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cell |
| T240 | 1218-1219 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T241 | 1373-1380 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cells |
| T242 | 1401-1402 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T243 | 1463-1469 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cell |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 325 | 26-36 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 326 | 74-84 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 327 | 141-151 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 328 | 437-447 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 329 | 747-757 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 330 | 858-863 | Species | denotes | CoV-2 | Tax:2697049 |
| 331 | 1234-1247 | Species | denotes | coronaviruses | Tax:11118 |
| 332 | 1325-1338 | Species | denotes | coronaviruses | Tax:11118 |
| 333 | 1417-1430 | Species | denotes | coronaviruses | Tax:11118 |
| 334 | 316-336 | Disease | denotes | SARS-CoV-2 infection | MESH:C000657245 |
| 335 | 474-494 | Disease | denotes | SARS-CoV-2 infection | MESH:C000657245 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T173 | 0-213 | Sentence | denotes | We here present the first SARS-CoV-2 Consensus sequence for all described SARS-CoV-2 ORF, including those in alternative frames covering the SARS-CoV-2 sequence variability represented by 1700 available sequences. |
| T174 | 214-385 | Sentence | denotes | The description of this sequence and of the matching OLP sets will aid the further immune analyses in SARS-CoV-2 infection and ensure reproducibility between laboratories. |
| T175 | 386-495 | Sentence | denotes | In light of recent studies, the T cell response to SARS-CoV-2 can be crucial to control SARS-CoV-2 infection. |
| T176 | 496-652 | Sentence | denotes | To date, published studies are generally limited to a few viral proteins, using recall antigens that do not reflect sequence diversity nor alternative ORFs. |
| T177 | 653-853 | Sentence | denotes | To overcome these limitations, the description of the global landscape of T cell responses to SARS-CoV-2 urgently needs unbiased, comparable, full-proteome screens for virus-specific T cell responses. |
| T178 | 854-999 | Sentence | denotes | The CoV-2-cons and matched OLP sets described here will allow to integrate data globally, generating crucial information for vaccine development. |
| T179 | 1000-1143 | Sentence | denotes | We also include measures of sequence entropy to identify the most variable segments and design additional OLP sequences that cover these sites. |
| T180 | 1144-1339 | Sentence | denotes | Of note, these entropy analyses, together with sequence alignments across a wide range of coronaviruses, also allowed the identification of highly conserved regions among different coronaviruses. |
| T181 | 1340-1485 | Sentence | denotes | These regions may be targeted by T cells, which could target a wide range of coronaviruses and may be relevant targets for T cell vaccine design. |