PMC:7565482 / 18605-19166 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7565482","sourcedb":"PMC","sourceid":"7565482","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7565482","text":"We here report the design of a CoV-2-cons sequence and the matched OLP sets for the comprehensive analysis of the adaptive T cell immune response against SARS-CoV-2. Three sets of OLP reported here provide enough flexibility to balance exhaustive screening for T cell responses and available resources. Ideally, the wide use of such a CoV-2-cons sequence and a specific OLP set (ideally 15 mer with 11 overlap) would ensure the comparability and reproducibility of immunological data across laboratories worldwide to accelerate SARS-CoV-2 immunological studies.","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T89","span":{"begin":125,"end":129},"obj":"Body_part"},{"id":"T90","span":{"begin":263,"end":267},"obj":"Body_part"}],"attributes":[{"id":"A89","pred":"fma_id","subj":"T89","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A90","pred":"fma_id","subj":"T90","obj":"http://purl.org/sig/ont/fma/fma68646"},{"subj":"T89","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T90","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T50","span":{"begin":154,"end":162},"obj":"Disease"},{"id":"T51","span":{"begin":528,"end":536},"obj":"Disease"}],"attributes":[{"id":"A50","pred":"mondo_id","subj":"T50","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A51","pred":"mondo_id","subj":"T51","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T50","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T51","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T160","span":{"begin":29,"end":30},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T161","span":{"begin":123,"end":129},"obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"T162","span":{"begin":261,"end":267},"obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"T163","span":{"begin":333,"end":334},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T164","span":{"begin":359,"end":360},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T165","span":{"begin":399,"end":401},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"}],"attributes":[{"subj":"T160","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T161","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T162","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T163","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T164","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T165","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"230","span":{"begin":31,"end":36},"obj":"Species"},{"id":"231","span":{"begin":154,"end":164},"obj":"Species"},{"id":"232","span":{"begin":335,"end":340},"obj":"Species"},{"id":"233","span":{"begin":528,"end":538},"obj":"Species"}],"attributes":[{"id":"A230","pred":"tao:has_database_id","subj":"230","obj":"Tax:2697049"},{"id":"A231","pred":"tao:has_database_id","subj":"231","obj":"Tax:2697049"},{"id":"A232","pred":"tao:has_database_id","subj":"232","obj":"Tax:2697049"},{"id":"A233","pred":"tao:has_database_id","subj":"233","obj":"Tax:2697049"},{"subj":"230","pred":"source","obj":"LitCovid-PubTator"},{"subj":"231","pred":"source","obj":"LitCovid-PubTator"},{"subj":"232","pred":"source","obj":"LitCovid-PubTator"},{"subj":"233","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T17","span":{"begin":130,"end":145},"obj":"http://purl.obolibrary.org/obo/GO_0006955"}],"attributes":[{"subj":"T17","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T134","span":{"begin":0,"end":165},"obj":"Sentence"},{"id":"T135","span":{"begin":166,"end":302},"obj":"Sentence"},{"id":"T136","span":{"begin":303,"end":561},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T134","pred":"source","obj":"LitCovid-sentences"},{"subj":"T135","pred":"source","obj":"LitCovid-sentences"},{"subj":"T136","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#b193ec","default":true},{"id":"LitCovid-PD-MONDO","color":"#93ec97"},{"id":"LitCovid-PD-CLO","color":"#ec93a9"},{"id":"LitCovid-PubTator","color":"#93c3ec"},{"id":"LitCovid-PD-GO-BP","color":"#ddec93"},{"id":"LitCovid-sentences","color":"#e193ec"}]}]}}