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PMC:7560808 / 4656-6755 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 259-262 https://glytoucan.org/Structures/Glycans/G00063MO denotes CAD

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T24 974-988 Body_part denotes Norepinephrine http://purl.org/sig/ont/fma/fma61799
T25 1188-1193 Body_part denotes Organ http://purl.org/sig/ont/fma/fma67498
T26 1277-1289 Body_part denotes thrombocytes http://purl.org/sig/ont/fma/fma62851
T27 1305-1310 Body_part denotes Liver http://purl.org/sig/ont/fma/fma7197
T28 1373-1387 Body_part denotes norepinephrine http://purl.org/sig/ont/fma/fma61799
T29 1720-1730 Body_part denotes Troponin T http://purl.org/sig/ont/fma/fma67900
T30 1720-1728 Body_part denotes Troponin http://purl.org/sig/ont/fma/fma62338

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T8 1188-1193 Body_part denotes Organ http://purl.obolibrary.org/obo/UBERON_0000062
T9 1305-1310 Body_part denotes Liver http://purl.obolibrary.org/obo/UBERON_0002107

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T27 217-223 Disease denotes Asthma http://purl.obolibrary.org/obo/MONDO_0004979
T28 232-235 Disease denotes HTN http://purl.obolibrary.org/obo/MONDO_0005044
T29 246-249 Disease denotes CHF http://purl.obolibrary.org/obo/MONDO_0005009
T30 259-262 Disease denotes CAD http://purl.obolibrary.org/obo/MONDO_0005010|http://purl.obolibrary.org/obo/MONDO_0018922
T32 271-279 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T33 289-292 Disease denotes CKD http://purl.obolibrary.org/obo/MONDO_0005300
T34 301-308 Disease denotes Obesity http://purl.obolibrary.org/obo/MONDO_0011122
T35 1551-1554 Disease denotes PCT http://purl.obolibrary.org/obo/MONDO_0008296|http://purl.obolibrary.org/obo/MONDO_0015104

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T28 90-92 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T29 115-117 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T30 124-128 http://purl.obolibrary.org/obo/CLO_0002960 denotes F 1
T31 254-256 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T32 333-335 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T33 360-362 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T34 684-686 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T35 1124-1126 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T36 1178-1180 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T37 1188-1193 http://purl.obolibrary.org/obo/UBERON_0003103 denotes Organ
T38 1305-1310 http://purl.obolibrary.org/obo/UBERON_0002107 denotes Liver
T39 1305-1310 http://www.ebi.ac.uk/efo/EFO_0000887 denotes Liver
T40 1541-1544 http://purl.obolibrary.org/obo/CLO_0001053 denotes 121
T41 1545-1548 http://purl.obolibrary.org/obo/CLO_0001180 denotes 203
T42 1657-1660 http://purl.obolibrary.org/obo/CLO_0001414 denotes 548
T43 1756-1758 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T44 2096-2098 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T11 647-651 Chemical denotes PEEP http://purl.obolibrary.org/obo/CHEBI_53359|http://purl.obolibrary.org/obo/CHEBI_60683
T13 729-731 Chemical denotes Hg http://purl.obolibrary.org/obo/CHEBI_16170|http://purl.obolibrary.org/obo/CHEBI_25195
T15 787-789 Chemical denotes Hg http://purl.obolibrary.org/obo/CHEBI_16170|http://purl.obolibrary.org/obo/CHEBI_25195
T17 974-988 Chemical denotes Norepinephrine http://purl.obolibrary.org/obo/CHEBI_18357
T18 1312-1321 Chemical denotes bilirubin http://purl.obolibrary.org/obo/CHEBI_16990
T19 1359-1369 Chemical denotes dobutamine http://purl.obolibrary.org/obo/CHEBI_4670
T20 1373-1387 Chemical denotes norepinephrine http://purl.obolibrary.org/obo/CHEBI_18357|http://purl.obolibrary.org/obo/CHEBI_33569
T22 1441-1451 Chemical denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T23 1592-1594 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T6 1264-1275 http://purl.obolibrary.org/obo/GO_0050817 denotes Coagulation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T37 0-23 Sentence denotes Characteristic Results
T38 24-46 Sentence denotes Number of patients 19
T39 47-96 Sentence denotes Age, yr, median (interquartile range) 57 (45–69)
T40 97-110 Sentence denotes Sex, n (%)  
T41 111-122 Sentence denotes  M 18 (95)
T42 123-132 Sentence denotes  F 1 (5)
T43 133-191 Sentence denotes BMI, kg/m2, median (interquartile range) 27.8 (26.2–33.5)
T44 192-215 Sentence denotes Comorbidities, n (%)  
T45 216-230 Sentence denotes  Asthma 1 (5)
T46 231-244 Sentence denotes  HTN 10 (53)
T47 245-257 Sentence denotes  CHF 2 (11)
T48 258-269 Sentence denotes  CAD 1 (5)
T49 270-287 Sentence denotes  Diabetes 5 (26)
T50 288-299 Sentence denotes  CKD 1 (5)
T51 300-316 Sentence denotes  Obesity 7 (37)
T52 317-336 Sentence denotes  Malignancy 2 (11)
T53 337-363 Sentence denotes  Immunosuppression 2 (11)
T54 364-401 Sentence denotes Invasive ventilation, n (%) 19 (100)
T55 402-479 Sentence denotes Time from hospital to ICU admission, d, median (interquartile range) 0 (0–2)
T56 480-569 Sentence denotes Time from ICU admission to invasive ventilation, d, median (interquartile range) 0 (0–0)
T57 570-624 Sentence denotes Respirator parameters, median (interquartile range)  
T58 625-645 Sentence denotes  FiO2, % 50 (30–60)
T59 646-669 Sentence denotes  PEEP, mbar 12 (12–15)
T60 670-694 Sentence denotes  Pplat, mbar 27 (23–30)
T61 695-776 Sentence denotes Oxygenation index (PaO2/FiO2), mm Hg, median (interquartile range) 173 (152–260)
T62 777-831 Sentence denotes PaCO2, mm Hg, median (interquartile range) 46 (40–51)
T63 832-882 Sentence denotes pH, median (interquartile range) 7.36 (7.32–7.41)
T64 883-943 Sentence denotes Lactate, mmol/L, median (interquartile range) 1.6 (1.5–2.9)
T65 944-973 Sentence denotes Vasopressor, n (%) 16 (84.2)
T66 974-1055 Sentence denotes Norepinephrine dose, μg/kg/min, median (interquartile range) 0.083 (0.019–0.182)
T67 1056-1096 Sentence denotes Renal replacement therapy, n (%) 3 (16)
T68 1097-1127 Sentence denotes vv-ECMO support, n (%) 2 (11)
T69 1128-1187 Sentence denotes SOFA score, points, median (interquartile range) 11 (9–14)
T70 1188-1221 Sentence denotes Organ-specific failures, n (%)  
T71 1222-1262 Sentence denotes  Respiratory (PaO2/FiO2 < 300) 19 (100)
T72 1263-1303 Sentence denotes  Coagulation (thrombocytes < 100) 1 (5)
T73 1304-1341 Sentence denotes  Liver (bilirubin > 33 μmol/L) 1 (5)
T74 1342-1397 Sentence denotes  Cardiovascular (dobutamine or norepinephrine) 16 (84)
T75 1398-1432 Sentence denotes  Neurological (GCS < 13) 19 (100)
T76 1433-1473 Sentence denotes  Renal (creatinine > 170 μmol/L) 4 (21)
T77 1474-1510 Sentence denotes Lab, median (interquartile range)  
T78 1511-1549 Sentence denotes  CRP (normal: <5), mg/L 174 (121–203)
T79 1550-1590 Sentence denotes  PCT normal: <0.5), μg/L 3.8 (0.5–10.9)
T80 1591-1630 Sentence denotes  IL-6 (normal: <7), ng/L 272 (142–541)
T81 1631-1670 Sentence denotes  LDH (normal: <248), U/L 548 (384–657)
T82 1671-1718 Sentence denotes  D-Dimer (normal: <0.5), mg/L 3.56 (0.84–8.88)
T83 1719-1762 Sentence denotes  Troponin T (normal: <14), ng/L 17 (11–23)
T84 1763-1808 Sentence denotes  NT-proBNP (normal: <86), ng/L 260 (82–1108)
T85 1809-1842 Sentence denotes Further clinical course, n (%)  
T86 1843-1868 Sentence denotes  Prone position 19 (100)
T87 1869-1888 Sentence denotes  Inhaled NO 4 (21)
T88 1889-1905 Sentence denotes  vv-ECMO 7 (37)
T89 1906-1940 Sentence denotes  Renal replacement therapy 8 (42)
T90 1941-1963 Sentence denotes  Septic shock 10 (53)
T91 1964-2006 Sentence denotes  Died by end of observation period 3 (16)
T92 2007-2048 Sentence denotes  Still dependent on critical care 6 (32)
T93 2049-2099 Sentence denotes  Still dependent on mechanical ventilation 2 (11)

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 217-223 Phenotype denotes Asthma http://purl.obolibrary.org/obo/HP_0002099
T3 246-249 Phenotype denotes CHF http://purl.obolibrary.org/obo/HP_0001635
T4 301-308 Phenotype denotes Obesity http://purl.obolibrary.org/obo/HP_0001513
T5 1949-1954 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
157 1512-1515 Gene denotes CRP Gene:1401
158 1592-1596 Gene denotes IL-6 Gene:3569
159 34-42 Species denotes patients Tax:9606
160 1441-1451 Chemical denotes creatinine MESH:D003404
161 246-249 Disease denotes CHF
162 271-279 Disease denotes Diabetes MESH:D003920
163 1942-1954 Disease denotes Septic shock MESH:D012772
164 1965-1969 Disease denotes Died MESH:D003643
165 777-782 CellLine denotes PaCO2 CVCL:L340