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PMC:7560789 / 3920-5234 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T5 631-640 Body_part denotes Stem cell http://purl.org/sig/ont/fma/fma63368
T6 636-640 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T7 997-1001 Body_part denotes body http://purl.org/sig/ont/fma/fma256135

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T21 459-463 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T22 505-507 Disease denotes DM http://purl.obolibrary.org/obo/MONDO_0005015|http://purl.obolibrary.org/obo/MONDO_0016367
T24 607-618 Disease denotes Neutropenia http://purl.obolibrary.org/obo/MONDO_0001475
T25 664-680 Disease denotes Immunodeficiency http://purl.obolibrary.org/obo/MONDO_0021094
T26 742-754 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T27 1014-1018 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T28 1021-1058 Disease denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T29 1041-1058 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T30 1060-1062 Disease denotes DM http://purl.obolibrary.org/obo/MONDO_0005015|http://purl.obolibrary.org/obo/MONDO_0016367
T32 1065-1082 Disease denotes diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005015
T33 1109-1122 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T30 229-231 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T31 234-236 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T32 238-240 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T33 334-336 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T34 341-344 http://purl.obolibrary.org/obo/CLO_0053001 denotes 114
T35 347-350 http://purl.obolibrary.org/obo/CLO_0054060 denotes 102
T36 355-358 http://purl.obolibrary.org/obo/CLO_0053001 denotes 114
T37 631-640 http://purl.obolibrary.org/obo/CL_0000034 denotes Stem cell
T38 733-741 http://purl.obolibrary.org/obo/UBERON_0001637 denotes Arterial
T39 733-741 http://www.ebi.ac.uk/efo/EFO_0000814 denotes Arterial
T40 838-840 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T41 841-843 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T54 50-53 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T56 67-70 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T58 264-266 Chemical denotes IV http://purl.obolibrary.org/obo/CHEBI_74327
T59 324-326 Chemical denotes PF http://purl.obolibrary.org/obo/CHEBI_74795|http://purl.obolibrary.org/obo/CHEBI_90284
T61 395-398 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T62 505-507 Chemical denotes DM http://purl.obolibrary.org/obo/CHEBI_141426
T63 557-571 Chemical denotes corticosteroid http://purl.obolibrary.org/obo/CHEBI_50858
T64 801-804 Chemical denotes LOS http://purl.obolibrary.org/obo/CHEBI_35371
T65 935-937 Chemical denotes IV http://purl.obolibrary.org/obo/CHEBI_74327
T66 987-989 Chemical denotes IV http://purl.obolibrary.org/obo/CHEBI_74327
T67 1060-1062 Chemical denotes DM http://purl.obolibrary.org/obo/CHEBI_141426
T68 1084-1087 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T70 1124-1127 Chemical denotes LOS http://purl.obolibrary.org/obo/CHEBI_35371
T71 1175-1177 Chemical denotes PF http://purl.obolibrary.org/obo/CHEBI_74795|http://purl.obolibrary.org/obo/CHEBI_90284

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T25 0-8 Sentence denotes Table 1.
T26 10-46 Sentence denotes Characteristics of Included Patients
T27 47-102 Sentence denotes   IPA (n = 9) Non-IPA (n = 33) All Patients (N = 42)
T28 103-160 Sentence denotes Age, yr, mean (range) 68 (39–76) 60 (25–79) 62 (25–79)
T29 161-209 Sentence denotes Sex, M, n (%) 5 (55.6%) 28 (84.8%) 33 (78.6%)
T30 210-256 Sentence denotes BMI, kg/m2 30 [26–34] 27 [27–29] 29 [28–30]
T31 257-316 Sentence denotes APACHE IV pred mort 19% [12–25]* 21% [17–26] 21% [17–25]
T32 317-377 Sentence denotes Lowest PF ratio 94 [74–114] 102 [91–114] 100 [91.2–110.2]
T33 378-458 Sentence denotes Galactomannan in BAL, ODI 3.33 [2.67–4.00]* 0.21 [0.17–0.27] 0.67 [0.39–0.95]
T34 459-504 Sentence denotes COPD, n (%) 4 (44.4%)* 4 (12.1%) 8 (19.0%)
T35 505-548 Sentence denotes DM, n (%) 1 (11.1%) 9 (27.3%) 10 (23.8%)
T36 549-606 Sentence denotes Chronic corticosteroid use, n (%) 1 (11.1%) 0 1 (2.4%)
T37 607-630 Sentence denotes Neutropenia, n 0 0 0
T38 631-663 Sentence denotes Stem cell transplant, n 0 0 0
T39 664-732 Sentence denotes Immunodeficiency (acquired/inherited), n (%) 1 (11.1%) 0 1 (2.4%)
T40 733-796 Sentence denotes Arterial hypertension, n (%) 3 (33.3%) 10 (30.3%) 13 (30.9%)
T41 797-844 Sentence denotes ICU LOS, d 37 [26–47]* 19 [15–23] 23 [18–27]
T42 845-898 Sentence denotes ICU mortality, n (%) 2 (22.2%) 5 (15.1%) 7 (16.6%)
T43 899-1223 Sentence denotes Definition of abbreviations: APACHE IV = Acute Physiology and Chronic Health Evaluation IV; BMI = body mass index; COPD = chronic obstructive pulmonary disease; DM = diabetes mellitus; IPA = invasive pulmonary aspergillosis; LOS = length of stay; ODI = optical density index; PF = PaO2/FiO2; pred mort = predicted mortality.
T44 1224-1301 Sentence denotes Data are expressed as mean [95% confidence interval] unless stated otherwise.
T45 1302-1314 Sentence denotes * P < 0.05.

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T5 378-391 GlycoEpitope denotes Galactomannan http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T21 50-53 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T22 67-70 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T23 459-463 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T24 607-618 Phenotype denotes Neutropenia http://purl.obolibrary.org/obo/HP_0001875
T25 664-680 Phenotype denotes Immunodeficiency http://purl.obolibrary.org/obo/HP_0002721
T26 742-754 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T27 1014-1018 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T28 1021-1058 Phenotype denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T29 1065-1082 Phenotype denotes diabetes mellitus http://purl.obolibrary.org/obo/HP_0000819
T30 1084-1087 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T31 1090-1122 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
107 85-93 Species denotes Patients Tax:9606
108 459-463 Disease denotes COPD MESH:D029424
109 505-507 Disease denotes DM MESH:D009223
110 607-618 Disease denotes Neutropenia MESH:D009503
111 664-680 Disease denotes Immunodeficiency MESH:D007153
112 742-754 Disease denotes hypertension MESH:D006973
113 849-858 Disease denotes mortality MESH:D003643
120 1014-1018 Disease denotes COPD MESH:D029424
121 1021-1058 Disease denotes chronic obstructive pulmonary disease MESH:D029424
122 1060-1062 Disease denotes DM MESH:D009223
123 1065-1082 Disease denotes diabetes mellitus MESH:D003920
124 1090-1122 Disease denotes invasive pulmonary aspergillosis MESH:D055744
125 1213-1222 Disease denotes mortality MESH:D003643