PMC:7558333 / 5055-5756
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T11 | 160-166 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T12 | 177-181 | Body_part | denotes | body | http://purl.org/sig/ont/fma/fma256135 |
| T13 | 396-401 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T14 | 412-417 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T15 | 437-442 | Body_part | denotes | Chest | http://purl.org/sig/ont/fma/fma9576 |
| T16 | 570-575 | Body_part | denotes | Organ | http://purl.org/sig/ont/fma/fma67498 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T8 | 160-166 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T9 | 396-401 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T10 | 412-417 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T11 | 437-442 | Body_part | denotes | Chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T12 | 570-575 | Body_part | denotes | Organ | http://purl.obolibrary.org/obo/UBERON_0000062 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T38 | 89-97 | Disease | denotes | diabetes | http://purl.obolibrary.org/obo/MONDO_0005015 |
| T39 | 99-135 | Disease | denotes | hypertension, cardiovascular disease | http://purl.obolibrary.org/obo/MONDO_0001302 |
| T40 | 99-111 | Disease | denotes | hypertension | http://purl.obolibrary.org/obo/MONDO_0005044 |
| T41 | 113-135 | Disease | denotes | cardiovascular disease | http://purl.obolibrary.org/obo/MONDO_0004995 |
| T42 | 137-154 | Disease | denotes | pulmonary disease | http://purl.obolibrary.org/obo/MONDO_0005275 |
| T43 | 160-174 | Disease | denotes | kidney disease | http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T31 | 160-166 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T32 | 160-166 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T33 | 160-166 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T34 | 385-386 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T35 | 396-401 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T36 | 396-401 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T37 | 430-435 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
| T38 | 437-442 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | Chest |
| T39 | 570-575 | http://purl.obolibrary.org/obo/UBERON_0003103 | denotes | Organ |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T2 | 99-111 | Phenotype | denotes | hypertension | http://purl.obolibrary.org/obo/HP_0000822 |
| T3 | 113-135 | Phenotype | denotes | cardiovascular disease | http://purl.obolibrary.org/obo/HP_0001626 |
| T4 | 160-174 | Phenotype | denotes | kidney disease | http://purl.obolibrary.org/obo/HP_0000112 |
| T5 | 555-561 | Phenotype | denotes | Sepsis | http://purl.obolibrary.org/obo/HP_0100806 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T41 | 0-340 | Sentence | denotes | The following data were recorded: age, patient’s preexisting condition (current smoking, diabetes, hypertension, cardiovascular disease, pulmonary disease, and kidney disease), body mass index, ICU length of stay, duration of mechanical ventilation, ventilator-free days at day 28, need for prone position ventilation, and death in the ICU. |
| T42 | 341-436 | Sentence | denotes | Initial clinical laboratory workup included a complete blood count and serum biochemical tests. |
| T43 | 437-498 | Sentence | denotes | Chest CT scans were performed during the ICU hospitalization. |
| T44 | 499-701 | Sentence | denotes | The Simplified Acute Physiology Score (SAPS II) and the Sepsis-Related Organ Failure Assessment (SOFA) score at admission in ICU, at day 7 and 14 days after admission were used to assess severity [7,8]. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 134 | 39-46 | Species | denotes | patient | Tax:9606 |
| 135 | 89-97 | Disease | denotes | diabetes | MESH:D003920 |
| 136 | 99-111 | Disease | denotes | hypertension | MESH:D006973 |
| 137 | 113-135 | Disease | denotes | cardiovascular disease | MESH:D002318 |
| 138 | 137-154 | Disease | denotes | pulmonary disease | MESH:D008171 |
| 139 | 160-174 | Disease | denotes | kidney disease | MESH:D007674 |
| 140 | 323-328 | Disease | denotes | death | MESH:D003643 |
| 141 | 555-583 | Disease | denotes | Sepsis-Related Organ Failure | MESH:D009102 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32664423-8254858-60101695 | 696-697 | 8254858 | denotes | 7 |
| 32664423-31775846-60101696 | 698-699 | 31775846 | denotes | 8 |